Wall clock time and date at job start Sat Apr 11 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21277 * 119.99810 * 2 1 4 4 N 1.34774 * 119.99936 * 179.97438 * 2 1 3 5 5 C 1.46494 * 120.00140 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47293 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99956 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00001 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00340 * 180.02562 * 8 6 5 10 10 C 1.50693 * 109.47748 * 179.97438 * 9 8 6 11 11 O 1.21290 * 119.99756 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00561 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00140 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.43709 * 325.70235 * 13 12 10 15 15 C 1.54892 * 110.59868 * 88.32010 * 13 12 10 16 16 C 1.54888 * 102.74611 * 156.67242 * 15 13 12 17 17 C 1.54265 * 104.19721 * 322.05788 * 16 15 13 18 18 H 1.08997 * 110.07567 * 264.30049 * 17 16 15 19 19 C 1.53010 * 110.02884 * 142.89561 * 17 16 15 20 20 N 1.46495 * 109.47237 * 67.83345 * 19 17 16 21 21 C 1.36935 * 120.00144 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00025 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00338 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00259 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46915 * 60.00218 * 25 23 21 27 27 H 1.48496 * 109.47284 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47271 * 300.00544 * 25 23 21 29 29 C 1.53873 * 106.59997 * 23.61451 * 17 16 15 30 30 H 1.08995 * 109.47295 * 239.99998 * 1 2 3 31 31 H 1.09011 * 109.47083 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47452 * 119.99843 * 1 2 3 33 33 H 0.97001 * 119.99944 * 359.97438 * 4 2 1 34 34 H 1.09005 * 109.47154 * 59.99791 * 5 4 2 35 35 H 1.09004 * 109.47014 * 300.00125 * 5 4 2 36 36 H 0.97007 * 120.00134 * 359.97438 * 8 6 5 37 37 H 1.08999 * 109.46724 * 59.99435 * 9 8 6 38 38 H 1.09004 * 109.47016 * 300.00141 * 9 8 6 39 39 H 0.97001 * 119.99638 * 0.02562 * 12 10 9 40 40 H 1.08992 * 110.75663 * 274.99104 * 15 13 12 41 41 H 1.09000 * 110.75339 * 38.36128 * 15 13 12 42 42 H 1.09007 * 110.48520 * 203.37936 * 16 15 13 43 43 H 1.08998 * 110.59686 * 80.79466 * 16 15 13 44 44 H 1.08997 * 109.46752 * 187.83501 * 19 17 16 45 45 H 1.09004 * 109.46715 * 307.83387 * 19 17 16 46 46 H 0.97001 * 119.99840 * 0.02562 * 20 19 17 47 47 H 0.97000 * 120.00053 * 179.97438 * 24 23 21 48 48 H 1.09002 * 110.03017 * 240.71676 * 29 17 16 49 49 H 1.08992 * 110.03600 * 119.28231 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1482 -2.5880 0.0022 7 8 3.3601 -3.5098 0.0030 8 7 5.4732 -2.8343 0.0024 9 6 5.9616 -4.2155 0.0029 10 6 7.4685 -4.2156 0.0024 11 8 8.0750 -3.1652 0.0021 12 7 8.1425 -5.3828 0.0033 13 6 9.6075 -5.3828 0.0033 14 1 9.9881 -4.5394 -0.5729 15 6 10.1524 -5.3392 1.4525 16 6 11.5712 -5.9421 1.3024 17 6 11.3959 -7.0675 0.2620 18 1 11.2507 -8.0233 0.7654 19 6 12.6242 -7.1361 -0.6478 20 7 13.7811 -7.5910 0.1272 21 6 15.0004 -7.7303 -0.4803 22 1 15.1092 -7.5044 -1.5309 23 6 16.0967 -8.1608 0.2541 24 7 15.9643 -8.4357 1.5345 25 14 17.7598 -8.3515 -0.5749 26 1 18.1902 -7.0422 -1.1279 27 1 18.7578 -8.8204 0.4197 28 1 17.6535 -9.3428 -1.6755 29 6 10.1474 -6.7118 -0.5641 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3634 1.0278 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6959 -2.0072 0.0013 34 1 4.0089 -0.6532 0.8911 35 1 4.0095 -0.6536 -0.8889 36 1 6.1036 -2.0970 0.0014 37 1 5.5982 -4.7297 -0.8868 38 1 5.5982 -4.7290 0.8931 39 1 7.6575 -6.2228 0.0039 40 1 10.2053 -4.3125 1.8146 41 1 9.5401 -5.9521 2.1140 42 1 11.9143 -6.3513 2.2528 43 1 12.2707 -5.1903 0.9371 44 1 12.4346 -7.8354 -1.4621 45 1 12.8280 -6.1470 -1.0582 46 1 13.6833 -7.7943 1.0706 47 1 16.7303 -8.7369 2.0477 48 1 9.3958 -7.4945 -0.4608 49 1 10.4164 -6.5881 -1.6131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755736913.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:56 Heat of formation + Delta-G solvation = -142.257270 kcal Electronic energy + Delta-G solvation = -28113.578653 eV Core-core repulsion = 23880.907313 eV Total energy + Delta-G solvation = -4232.671340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53771 -40.92142 -40.10617 -39.24149 -36.51519 -35.78290 -35.42080 -34.87951 -32.96376 -31.59231 -30.26636 -30.01650 -28.67410 -27.03523 -25.97212 -23.92432 -22.18724 -21.72781 -21.65009 -21.50599 -20.81016 -19.29549 -19.02644 -17.98182 -17.86564 -17.34573 -17.27672 -16.89159 -16.72241 -16.55482 -16.23060 -15.92836 -15.76461 -15.38271 -15.15102 -14.92273 -14.64078 -14.42469 -14.37533 -14.12564 -14.03589 -13.55607 -13.48026 -13.32208 -13.22000 -12.93013 -12.85248 -12.75566 -12.45026 -12.19996 -12.10306 -11.75321 -11.73545 -11.56691 -11.35459 -11.28652 -11.11900 -11.05125 -10.89787 -10.41682 -10.23855 -10.07058 -8.97823 -7.94743 -5.22866 1.35252 1.47114 1.48607 1.49954 1.52974 1.56152 1.59420 2.15642 2.50875 2.56737 3.38654 3.45865 3.55915 3.61005 3.73394 3.90459 3.94085 4.16767 4.22991 4.34336 4.34774 4.35902 4.41027 4.50206 4.52274 4.56457 4.62624 4.68566 4.69008 4.77119 4.92923 5.04417 5.07133 5.08058 5.12891 5.15325 5.25650 5.26677 5.40811 5.48750 5.52852 5.57342 6.26499 6.28003 6.46010 6.46707 6.93629 7.13845 7.16639 7.34423 8.12139 8.35043 9.28606 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.044640 B = 0.001324 C = 0.001313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.093100 B =21137.802431 C =21312.065735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.508 3.492 3 O -0.597 6.597 4 N -0.715 5.715 5 C 0.098 3.902 6 C 0.521 3.479 7 O -0.562 6.562 8 N -0.710 5.710 9 C 0.105 3.895 10 C 0.509 3.491 11 O -0.575 6.575 12 N -0.701 5.701 13 C 0.148 3.852 14 H 0.077 0.923 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.088 4.088 18 H 0.073 0.927 19 C 0.156 3.844 20 N -0.744 5.744 21 C -0.249 4.249 22 H 0.073 0.927 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.972 3.028 26 H -0.280 1.280 27 H -0.294 1.294 28 H -0.277 1.277 29 C -0.109 4.109 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.419 0.581 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.418 0.582 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.420 0.580 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.021 0.979 45 H 0.015 0.985 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.099 0.901 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.879 10.089 -3.025 35.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.297 3.703 3 O -0.478 6.478 4 N -0.371 5.371 5 C -0.029 4.029 6 C 0.308 3.692 7 O -0.442 6.442 8 N -0.365 5.365 9 C -0.022 4.022 10 C 0.296 3.704 11 O -0.454 6.454 12 N -0.353 5.353 13 C 0.043 3.957 14 H 0.095 0.905 15 C -0.160 4.160 16 C -0.149 4.149 17 C -0.108 4.108 18 H 0.092 0.908 19 C 0.029 3.971 20 N -0.387 5.387 21 C -0.381 4.381 22 H 0.091 0.909 23 C -0.266 4.266 24 N -0.619 5.619 25 Si 0.801 3.199 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.203 1.203 29 C -0.147 4.147 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.258 0.742 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.256 0.744 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.259 0.741 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.039 0.961 45 H 0.033 0.967 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.118 0.882 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -33.451 10.882 -3.193 35.321 hybrid contribution 1.558 -0.626 0.152 1.686 sum -31.893 10.256 -3.041 33.639 Atomic orbital electron populations 1.21936 0.87809 1.06252 1.06553 1.21590 0.92384 0.82246 0.74033 1.90729 1.72112 1.33057 1.51931 1.45809 1.05849 1.10217 1.75217 1.21061 0.82804 0.93231 1.05846 1.20510 0.82087 0.91295 0.75327 1.90705 1.55653 1.46557 1.51239 1.45608 1.07133 1.09252 1.74498 1.21168 0.89359 0.84980 1.06696 1.20818 0.90383 0.83924 0.75272 1.90730 1.70759 1.32569 1.51383 1.45829 1.06681 1.08963 1.73814 1.21695 0.79063 0.98700 0.96273 0.90499 1.22782 0.95603 1.00746 0.96872 1.22231 0.96673 0.97293 0.98711 1.21788 0.93952 0.99065 0.95952 0.90832 1.20996 0.86512 0.95918 0.93637 1.42553 1.05693 1.80540 1.09896 1.19619 0.87828 1.36309 0.94314 0.90885 1.25535 1.01636 1.02944 0.96480 1.69804 1.30825 1.53607 1.07711 0.85237 0.79547 0.77980 0.77157 1.20589 1.22058 1.20296 1.22297 0.96469 0.96222 0.99717 0.87075 0.89011 0.87064 0.74153 0.87578 0.87529 0.74357 0.86372 0.86443 0.74148 0.92282 0.89717 0.92582 0.93279 0.96147 0.96743 0.79366 0.94017 0.88210 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.32 71.24 0.74 -0.08 16 2 C 0.51 6.99 7.94 87.66 0.70 7.68 16 3 O -0.60 -13.97 17.09 -3.02 -0.05 -14.03 16 4 N -0.72 -7.97 5.53 -466.79 -2.58 -10.55 16 5 C 0.10 1.10 6.15 85.63 0.53 1.63 16 6 C 0.52 6.62 7.90 87.66 0.69 7.32 16 7 O -0.56 -9.65 15.67 -3.02 -0.05 -9.69 16 8 N -0.71 -8.25 5.53 -466.80 -2.58 -10.83 16 9 C 0.10 1.04 6.15 85.63 0.53 1.57 16 10 C 0.51 7.83 7.90 87.65 0.69 8.53 16 11 O -0.57 -13.65 15.35 -3.06 -0.05 -13.70 16 12 N -0.70 -9.05 5.17 -437.44 -2.26 -11.32 16 13 C 0.15 2.89 3.18 46.07 0.15 3.03 16 14 H 0.08 1.86 7.61 -2.39 -0.02 1.85 16 15 C -0.12 -2.72 6.58 31.89 0.21 -2.51 16 16 C -0.11 -3.27 6.08 31.67 0.19 -3.08 16 17 C -0.09 -2.54 2.96 -10.07 -0.03 -2.57 16 18 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 19 C 0.16 6.02 5.31 86.38 0.46 6.48 16 20 N -0.74 -37.65 5.45 -343.45 -1.87 -39.52 16 21 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 22 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 24 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 25 Si 0.97 46.21 29.55 68.60 2.03 48.23 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 29 C -0.11 -2.12 6.19 31.32 0.19 -1.93 16 30 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.09 0.54 8.12 -2.38 -0.02 0.52 16 32 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.42 3.67 7.44 -92.71 -0.69 2.98 16 34 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.42 4.99 7.44 -92.70 -0.69 4.30 16 37 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.42 2.58 8.35 -92.71 -0.77 1.81 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.05 1.67 7.76 -2.39 -0.02 1.65 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.01 0.58 8.00 -2.39 -0.02 0.56 16 46 H 0.37 20.05 7.55 -92.71 -0.70 19.35 16 47 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 48 H 0.10 1.36 7.72 -2.39 -0.02 1.34 16 49 H 0.08 1.53 7.67 -2.39 -0.02 1.51 16 Total: -1.00 -80.33 409.23 -2.63 -82.96 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -1.85 Total: 28.34 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.35 Total: 9.14 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -9.01 Total: -131.26 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.15 Total: -37.42 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -80.33 -2.63 -82.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755736913.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.294 kcal (2) G-P(sol) polarization free energy of solvation -80.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds