Wall clock time and date at job start Sat Apr 11 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21277 * 120.00023 * 2 1 4 4 N 1.34778 * 120.00073 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99949 * 180.02562 * 4 2 1 6 6 C 1.50706 * 109.46956 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99647 * 359.97438 * 6 5 4 8 8 N 1.34769 * 119.99710 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00130 * 179.97438 * 8 6 5 10 10 C 1.50693 * 109.47256 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00267 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.47026 * 125.64701 * 0.03037 * 12 10 9 14 14 C 1.54323 * 107.27157 * 178.90285 * 13 12 10 15 15 H 1.09002 * 110.72057 * 219.43994 * 14 13 12 16 16 N 1.46505 * 110.71829 * 96.34403 * 14 13 12 17 17 C 1.36930 * 119.99608 * 88.84823 * 16 14 13 18 18 H 1.08002 * 120.00527 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99561 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00385 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47152 * 60.00033 * 21 19 17 23 23 H 1.48500 * 109.47162 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47099 * 299.99706 * 21 19 17 25 25 C 1.55153 * 103.10236 * 337.89242 * 14 13 12 26 26 C 1.53000 * 111.00826 * 153.48934 * 25 14 13 27 27 C 1.53001 * 111.00494 * 277.34136 * 25 14 13 28 28 C 1.47426 * 125.65239 * 179.97438 * 12 10 9 29 29 H 1.09008 * 109.47137 * 239.99276 * 1 2 3 30 30 H 1.08996 * 109.47588 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.47255 * 119.99699 * 1 2 3 32 32 H 0.97000 * 120.00105 * 359.97438 * 4 2 1 33 33 H 1.08996 * 109.47461 * 59.99347 * 5 4 2 34 34 H 1.09004 * 109.46509 * 299.99074 * 5 4 2 35 35 H 0.97001 * 120.00434 * 359.97438 * 8 6 5 36 36 H 1.08996 * 109.46664 * 60.00190 * 9 8 6 37 37 H 1.09000 * 109.46724 * 300.00478 * 9 8 6 38 38 H 1.09000 * 109.88602 * 59.48426 * 13 12 10 39 39 H 1.09003 * 109.87921 * 298.32159 * 13 12 10 40 40 H 0.96995 * 119.99603 * 268.83426 * 16 14 13 41 41 H 0.97001 * 119.99920 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.47091 * 59.99529 * 26 25 14 43 43 H 1.08997 * 109.47530 * 180.02562 * 26 25 14 44 44 H 1.09011 * 109.46565 * 300.00310 * 26 25 14 45 45 H 1.09002 * 109.47253 * 59.99589 * 27 25 14 46 46 H 1.09002 * 109.46884 * 180.02562 * 27 25 14 47 47 H 1.09002 * 109.46818 * 299.99925 * 27 25 14 48 48 H 1.09003 * 110.36380 * 323.00845 * 28 12 10 49 49 H 1.09004 * 110.36441 * 85.21476 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 -0.0001 7 8 3.3601 -3.5098 -0.0001 8 7 5.4732 -2.8342 -0.0001 9 6 5.9617 -4.2155 0.0003 10 6 7.4686 -4.2154 0.0008 11 8 8.0750 -3.1651 0.0003 12 7 8.1426 -5.3826 0.0007 13 6 7.5363 -6.7221 -0.0004 14 6 8.6897 -7.7470 -0.0283 15 1 8.4442 -8.5863 -0.6790 16 7 8.9993 -8.2158 1.3248 17 6 8.3419 -9.3007 1.8405 18 1 7.5950 -9.8105 1.2500 19 6 8.6356 -9.7452 3.1223 20 7 9.5462 -9.1243 3.8418 21 14 7.7383 -11.2248 3.8262 22 1 7.9905 -12.4107 2.9687 23 1 8.2312 -11.4948 5.2008 24 1 6.2804 -10.9455 3.8686 25 6 9.8730 -6.9292 -0.6100 26 6 11.2144 -7.4940 -0.1383 27 6 9.8076 -6.8808 -2.1378 28 6 9.6097 -5.5278 0.0006 29 1 -0.3634 -0.5140 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6959 -2.0073 -0.0005 33 1 4.0089 -0.6539 0.8904 34 1 4.0095 -0.6528 -0.8896 35 1 6.1036 -2.0970 -0.0005 36 1 5.5983 -4.7296 -0.8895 37 1 5.5984 -4.7290 0.8905 38 1 6.9100 -6.8448 -0.8840 39 1 6.9398 -6.8597 0.9014 40 1 9.6699 -7.7579 1.8551 41 1 9.7516 -9.4353 4.7374 42 1 11.3091 -8.5286 -0.4680 43 1 12.0265 -6.9020 -0.5603 44 1 11.2632 -7.4536 0.9499 45 1 8.8733 -6.4120 -2.4468 46 1 10.6487 -6.3019 -2.5193 47 1 9.8544 -7.8945 -2.5357 48 1 10.0674 -4.7529 -0.6143 49 1 9.9956 -5.4803 1.0189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755756536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:05 Heat of formation + Delta-G solvation = -120.079470 kcal Electronic energy + Delta-G solvation = -29751.625959 eV Core-core repulsion = 25519.916321 eV Total energy + Delta-G solvation = -4231.709639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68095 -41.11051 -40.19683 -39.32252 -35.88196 -35.72216 -35.44662 -34.65433 -32.60080 -31.60962 -30.06694 -29.45714 -28.03159 -27.91096 -26.29712 -25.56909 -23.11768 -21.83654 -21.65178 -20.65551 -20.20867 -19.10216 -18.92960 -17.97875 -17.69647 -17.50363 -17.16300 -16.96459 -16.66370 -16.49235 -16.04526 -15.75489 -15.65099 -15.41422 -15.08166 -14.73968 -14.56940 -14.33248 -14.13966 -14.05052 -13.74950 -13.50246 -13.38882 -13.32402 -13.21733 -13.04252 -12.93224 -12.79850 -12.73907 -12.67131 -12.18828 -12.07745 -11.84041 -11.44750 -11.34100 -11.28937 -11.14280 -11.08401 -10.89786 -10.45156 -10.24642 -9.70304 -9.00251 -7.91547 -5.19458 1.31617 1.40765 1.46654 1.50935 1.51760 1.57503 1.58986 2.04568 2.45718 2.58093 3.23268 3.39761 3.47096 3.64010 3.81307 3.88877 3.93045 4.05984 4.16382 4.26347 4.28385 4.32219 4.33014 4.48228 4.56129 4.61119 4.66156 4.67946 4.80722 4.90419 4.90921 4.99007 5.05169 5.06637 5.09416 5.11654 5.23108 5.24941 5.34402 5.41653 5.55705 5.61516 6.24289 6.29570 6.42888 6.45804 6.87884 6.94681 7.15342 7.37672 8.12029 8.34316 9.31224 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012082 B = 0.002322 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.013683 B =12054.036602 C =13701.139315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.509 3.491 3 O -0.595 6.595 4 N -0.716 5.716 5 C 0.103 3.897 6 C 0.518 3.482 7 O -0.564 6.564 8 N -0.707 5.707 9 C 0.112 3.888 10 C 0.521 3.479 11 O -0.575 6.575 12 N -0.598 5.598 13 C 0.076 3.924 14 C 0.168 3.832 15 H 0.081 0.919 16 N -0.722 5.722 17 C -0.234 4.234 18 H 0.083 0.917 19 C -0.073 4.073 20 N -0.968 5.968 21 Si 0.966 3.034 22 H -0.278 1.278 23 H -0.304 1.304 24 H -0.280 1.280 25 C -0.077 4.077 26 C -0.119 4.119 27 C -0.123 4.123 28 C 0.121 3.879 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.419 0.581 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.419 0.581 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.375 0.625 41 H 0.248 0.752 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 12.091 -13.561 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.298 3.702 3 O -0.476 6.476 4 N -0.372 5.372 5 C -0.025 4.025 6 C 0.305 3.695 7 O -0.443 6.443 8 N -0.362 5.362 9 C -0.015 4.015 10 C 0.310 3.690 11 O -0.457 6.457 12 N -0.330 5.330 13 C -0.049 4.049 14 C 0.058 3.942 15 H 0.099 0.901 16 N -0.362 5.362 17 C -0.366 4.366 18 H 0.100 0.900 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.796 3.204 22 H -0.204 1.204 23 H -0.231 1.231 24 H -0.206 1.206 25 C -0.078 4.078 26 C -0.177 4.177 27 C -0.180 4.180 28 C -0.002 4.002 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.257 0.743 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.258 0.742 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.208 0.792 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.220 12.590 -13.530 21.621 hybrid contribution 0.273 -0.854 1.357 1.626 sum -10.947 11.736 -12.174 20.144 Atomic orbital electron populations 1.21931 0.87754 1.06309 1.06485 1.21587 0.92383 0.82170 0.74032 1.90720 1.72082 1.32911 1.51917 1.45845 1.05795 1.10319 1.75237 1.21038 0.82867 0.92541 1.06045 1.20685 0.81898 0.91649 0.75271 1.90712 1.55656 1.46805 1.51173 1.45574 1.07342 1.08675 1.74568 1.20992 0.89657 0.85173 1.05680 1.20332 0.90078 0.82428 0.76127 1.90660 1.70637 1.31316 1.53042 1.48353 1.07945 1.06011 1.70664 1.23190 0.98421 0.81429 1.01905 1.21499 0.91894 0.94035 0.86790 0.90084 1.42592 1.46604 1.33957 1.13032 1.19587 1.15173 1.04758 0.97058 0.89961 1.25460 1.00687 1.02337 0.98018 1.69801 1.37010 1.44040 1.11012 0.85330 0.78170 0.80136 0.76804 1.20367 1.23056 1.20618 1.22014 0.95875 0.92908 0.97052 1.21496 0.95067 1.00787 1.00379 1.21647 1.02383 1.02797 0.91197 1.22308 0.79987 0.97844 1.00014 0.87277 0.88789 0.87057 0.74251 0.87503 0.87008 0.74195 0.86643 0.88418 0.88872 0.92322 0.79171 0.94318 0.92508 0.91158 0.94410 0.92293 0.91270 0.91270 0.90040 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.32 71.23 0.74 -0.62 16 2 C 0.51 8.78 7.94 87.65 0.70 9.48 16 3 O -0.60 -15.62 17.09 -3.02 -0.05 -15.67 16 4 N -0.72 -11.26 5.53 -466.78 -2.58 -13.84 16 5 C 0.10 1.67 6.15 85.63 0.53 2.19 16 6 C 0.52 10.35 7.90 87.66 0.69 11.04 16 7 O -0.56 -14.27 15.67 -3.03 -0.05 -14.32 16 8 N -0.71 -14.28 5.53 -466.79 -2.58 -16.86 16 9 C 0.11 2.54 5.35 85.63 0.46 3.00 16 10 C 0.52 14.57 7.92 87.65 0.69 15.27 16 11 O -0.58 -18.67 15.92 -3.02 -0.05 -18.72 16 12 N -0.60 -17.15 3.32 -811.37 -2.69 -19.84 16 13 C 0.08 2.18 5.93 86.73 0.51 2.69 16 14 C 0.17 5.48 2.87 46.18 0.13 5.61 16 15 H 0.08 2.54 8.01 -2.39 -0.02 2.52 16 16 N -0.72 -31.95 4.56 -317.33 -1.45 -33.40 16 17 C -0.23 -11.70 9.97 84.03 0.84 -10.86 16 18 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 20 N -0.97 -56.67 13.06 21.65 0.28 -56.39 16 21 Si 0.97 44.02 29.55 68.60 2.03 46.04 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 C -0.08 -2.09 0.84 -50.72 -0.04 -2.13 16 26 C -0.12 -3.47 8.22 71.98 0.59 -2.88 16 27 C -0.12 -2.51 8.57 71.98 0.62 -1.89 16 28 C 0.12 3.57 5.83 86.93 0.51 4.07 16 29 H 0.11 0.51 8.14 -2.38 -0.02 0.50 16 30 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 31 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.42 5.84 7.44 -92.71 -0.69 5.15 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.42 7.98 7.44 -92.71 -0.69 7.29 16 36 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 37 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 1.98 8.04 -2.39 -0.02 1.96 16 40 H 0.37 18.44 6.20 -92.71 -0.58 17.86 16 41 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 1.34 6.43 -2.38 -0.02 1.33 16 45 H 0.06 1.15 7.92 -2.39 -0.02 1.13 16 46 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 47 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.08 2.25 7.95 -2.39 -0.02 2.23 16 49 H 0.05 1.59 7.99 -2.39 -0.02 1.57 16 Total: -1.00 -71.51 406.08 -0.68 -72.19 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -0.97 Total: 39.27 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: 7.43 Total: 31.53 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -9.02 Total: -140.32 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -0.15 Total: -48.71 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.51 -0.68 -72.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755756536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.886 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds