Wall clock time and date at job start Sat Apr 11 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99675 * 2 1 4 4 H 1.09001 * 109.57437 * 29.84098 * 3 2 1 5 5 C 1.53095 * 109.52639 * 269.68384 * 3 2 1 6 6 O 1.42894 * 109.41746 * 182.48679 * 5 3 2 7 7 C 1.42910 * 114.09721 * 61.16023 * 6 5 3 8 8 C 1.53096 * 109.41166 * 298.84004 * 7 6 5 9 9 C 1.53174 * 109.16421 * 57.61054 * 8 7 6 10 10 H 1.08999 * 109.54153 * 62.96776 * 9 8 7 11 11 N 1.46900 * 109.54513 * 183.15141 * 9 8 7 12 12 C 1.46897 * 110.99651 * 296.63156 * 11 9 8 13 13 C 1.38578 * 110.99688 * 60.58149 * 11 9 8 14 14 N 1.31214 * 126.47559 * 354.86305 * 13 11 9 15 15 N 1.28530 * 109.85882 * 180.02562 * 14 13 11 16 16 C 1.30294 * 110.05810 * 359.97438 * 15 14 13 17 17 C 1.50701 * 126.35224 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.47271 * 269.96053 * 17 16 15 19 19 H 1.09002 * 109.47406 * 54.99474 * 18 17 16 20 20 O 1.42905 * 109.46822 * 295.00108 * 18 17 16 21 21 C 1.50701 * 109.47275 * 174.99691 * 18 17 16 22 22 H 1.07997 * 119.99624 * 0.02562 * 21 18 17 23 23 C 1.37877 * 119.99731 * 179.97438 * 21 18 17 24 24 N 1.31516 * 120.00636 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 119.99844 * 180.02562 * 23 21 18 26 26 H 1.48496 * 109.47057 * 60.00123 * 25 23 21 27 27 H 1.48492 * 109.47338 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46847 * 300.00349 * 25 23 21 29 29 N 1.36458 * 126.46906 * 174.90713 * 13 11 9 30 30 C 1.46502 * 127.13703 * 359.69842 * 29 13 11 31 31 H 1.08992 * 109.47353 * 300.00069 * 1 2 3 32 32 H 1.09004 * 109.47150 * 60.00491 * 1 2 3 33 33 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47802 * 62.50147 * 5 3 2 35 35 H 1.09003 * 109.48599 * 302.47901 * 5 3 2 36 36 H 1.09004 * 109.47690 * 178.86005 * 7 6 5 37 37 H 1.08996 * 109.47740 * 58.82534 * 7 6 5 38 38 H 1.09004 * 109.52215 * 297.69874 * 8 7 6 39 39 H 1.09001 * 109.51547 * 177.51628 * 8 7 6 40 40 H 1.09005 * 109.46919 * 189.13680 * 12 11 9 41 41 H 1.09006 * 109.47365 * 309.13442 * 12 11 9 42 42 H 1.09005 * 109.47503 * 69.13509 * 12 11 9 43 43 H 1.09001 * 109.46507 * 29.95871 * 17 16 15 44 44 H 1.08998 * 109.46789 * 149.95596 * 17 16 15 45 45 H 0.96698 * 113.99603 * 299.99657 * 20 18 17 46 46 H 0.96994 * 120.00486 * 179.97438 * 24 23 21 47 47 H 1.09004 * 109.46648 * 90.00279 * 30 29 13 48 48 H 1.08997 * 109.47028 * 210.00648 * 30 29 13 49 49 H 1.08994 * 109.46940 * 330.00547 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 2.0014 0.5110 5 6 2.2255 1.7697 -1.4429 6 8 2.8596 3.0503 -1.4403 7 6 4.1471 3.0626 -0.8202 8 6 4.0089 2.6503 0.6477 9 6 3.3606 1.2646 0.7219 10 1 4.0098 0.5321 0.2423 11 7 3.1550 0.8929 2.1282 12 6 4.4375 0.7764 2.8348 13 6 2.3183 1.7967 2.7634 14 7 1.8363 2.9052 2.2531 15 7 1.0970 3.4998 3.1202 16 6 1.0632 2.8113 4.2259 17 6 0.3079 3.1709 5.4794 18 6 1.2024 4.0149 6.3894 19 1 1.5672 4.8816 5.8380 20 8 2.3118 3.2286 6.8289 21 6 0.4095 4.4773 7.5846 22 1 -0.6286 4.1968 7.6852 23 6 1.0096 5.2575 8.5501 24 7 2.2738 5.5987 8.4278 25 14 0.0268 5.8300 10.0320 26 1 -0.4699 4.6491 10.7828 27 1 0.8950 6.6493 10.9152 28 1 -1.1261 6.6473 9.5756 29 7 1.8408 1.7022 4.0382 30 6 2.1011 0.6310 5.0031 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2629 1.8417 -1.9491 35 1 2.8581 1.0519 -1.9652 36 1 4.5687 4.0662 -0.8779 37 1 4.8048 2.3617 -1.3343 38 1 3.3840 3.3735 1.1719 39 1 4.9951 2.6165 1.1108 40 1 4.2706 0.3456 3.8221 41 1 5.1085 0.1324 2.2661 42 1 4.8853 1.7646 2.9405 43 1 -0.5830 3.7408 5.2157 44 1 0.0153 2.2598 6.0011 45 1 2.0612 2.4391 7.3278 46 1 2.6958 6.1478 9.1069 47 1 2.9874 0.8765 5.5881 48 1 1.2443 0.5252 5.6685 49 1 2.2652 -0.3057 4.4705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772169418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:14 Heat of formation + Delta-G solvation = -31.530330 kcal Electronic energy + Delta-G solvation = -32216.350025 eV Core-core repulsion = 27988.480166 eV Total energy + Delta-G solvation = -4227.869860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.72093 -40.09190 -37.31766 -37.22438 -36.17833 -34.60239 -32.22494 -31.85690 -31.12429 -30.47776 -28.54603 -27.36390 -26.65490 -26.29476 -25.27224 -24.13967 -23.06963 -21.81615 -21.31947 -20.00401 -19.90676 -17.40719 -17.07920 -16.75779 -16.48315 -16.24992 -15.96963 -15.35826 -15.30792 -15.04454 -14.67895 -14.56733 -14.31352 -14.08488 -13.95284 -13.69709 -13.36222 -13.32127 -13.16980 -12.94635 -12.69491 -12.67659 -12.08430 -11.94585 -11.76667 -11.48574 -11.36809 -11.22501 -11.12160 -10.98623 -10.88424 -10.84440 -10.48542 -10.17157 -10.13062 -9.95686 -9.76610 -9.54721 -9.25814 -9.13839 -8.65611 -8.43177 -7.79143 -6.08664 -4.28508 2.12516 2.56931 3.21417 3.24580 3.30676 3.32546 3.46058 3.72403 3.94925 4.32135 4.50464 4.55519 4.79332 4.86623 4.95089 5.00544 5.06572 5.10875 5.17794 5.21598 5.22213 5.25483 5.28153 5.33775 5.37065 5.40297 5.46681 5.54076 5.59741 5.63904 5.64289 5.71312 5.83517 5.94436 6.07439 6.12253 6.27880 6.34306 6.37283 6.65864 6.68314 6.88753 6.97416 7.24510 7.45082 7.61528 7.74613 8.04130 8.73062 9.19185 9.21378 9.47741 10.95361 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002970 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.791241 B = 9423.911883 C = 9564.482556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.372 6.372 3 C 0.049 3.951 4 H 0.107 0.893 5 C 0.048 3.952 6 O -0.371 6.371 7 C 0.070 3.930 8 C -0.203 4.203 9 C 0.110 3.890 10 H 0.097 0.903 11 N -0.443 5.443 12 C 0.019 3.981 13 C 0.337 3.663 14 N -0.323 5.323 15 N -0.300 5.300 16 C 0.218 3.782 17 C -0.062 4.062 18 C 0.239 3.761 19 H 0.063 0.937 20 O -0.563 6.563 21 C -0.575 4.575 22 H 0.059 0.941 23 C 0.081 3.919 24 N -0.857 5.857 25 Si 0.892 3.108 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.275 1.275 29 N -0.470 5.470 30 C 0.080 3.920 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.340 0.660 46 H 0.262 0.738 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 -13.867 -14.808 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.291 6.291 3 C -0.010 4.010 4 H 0.124 0.876 5 C -0.030 4.030 6 O -0.289 6.289 7 C -0.008 4.008 8 C -0.243 4.243 9 C 0.002 3.998 10 H 0.115 0.885 11 N -0.165 5.165 12 C -0.129 4.129 13 C -0.019 4.019 14 N -0.168 5.168 15 N -0.138 5.138 16 C -0.050 4.050 17 C -0.103 4.103 18 C 0.180 3.820 19 H 0.081 0.919 20 O -0.365 6.365 21 C -0.613 4.613 22 H 0.077 0.923 23 C -0.125 4.125 24 N -0.492 5.492 25 Si 0.719 3.281 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.200 1.200 29 N -0.164 5.164 30 C -0.063 4.063 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.114 0.886 44 H 0.088 0.912 45 H 0.183 0.817 46 H 0.072 0.928 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.040 -12.690 -16.087 20.715 hybrid contribution -0.225 -0.593 2.279 2.366 sum 2.815 -13.284 -13.809 19.366 Atomic orbital electron populations 1.22728 0.81312 1.02224 0.99925 1.87866 1.19365 1.26928 1.94921 1.23137 0.95652 0.86232 0.95949 0.87577 1.22966 0.98497 0.85573 0.95982 1.87981 1.32299 1.29870 1.78742 1.22488 0.84776 1.02188 0.91312 1.23237 1.02581 0.99069 0.99365 1.21757 0.96459 0.96345 0.85197 0.88523 1.58888 1.12698 1.42354 1.02538 1.22601 0.88826 1.01805 0.99631 1.22479 1.01492 0.93642 0.84320 1.74351 1.14645 1.03177 1.24602 1.73984 1.17558 1.23683 0.98563 1.25202 0.96396 0.84645 0.98724 1.21197 0.99021 1.01604 0.88448 1.19395 0.83368 0.88398 0.90828 0.91886 1.86630 1.36054 1.39360 1.74485 1.21537 0.97661 1.34956 1.07153 0.92314 1.25029 0.94651 0.94783 0.98083 1.70064 1.10595 1.34421 1.34145 0.86691 0.80085 0.78891 0.82451 1.20128 1.21206 1.19992 1.45938 1.38004 1.20730 1.11753 1.22054 1.03902 0.88412 0.91971 0.94249 0.94297 0.89850 0.88825 0.92751 0.88506 0.93449 0.86190 0.90800 0.90527 0.89798 0.93746 0.88573 0.91151 0.81715 0.92821 0.89703 0.89256 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 101.05 1.09 1.48 16 2 O -0.37 -4.89 10.28 -35.23 -0.36 -5.25 16 3 C 0.05 0.65 1.97 -26.59 -0.05 0.60 16 4 H 0.11 1.74 5.13 -51.93 -0.27 1.47 16 5 C 0.05 0.56 6.47 37.21 0.24 0.80 16 6 O -0.37 -4.92 10.77 -35.23 -0.38 -5.30 16 7 C 0.07 0.77 6.84 37.21 0.25 1.02 16 8 C -0.20 -2.55 4.74 -26.59 -0.13 -2.67 16 9 C 0.11 1.37 1.99 -67.53 -0.13 1.24 16 10 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 11 N -0.44 -5.92 4.76 -174.54 -0.83 -6.75 16 12 C 0.02 0.20 8.84 60.06 0.53 0.74 16 13 C 0.34 5.56 6.14 -318.88 -1.96 3.60 16 14 N -0.32 -6.12 6.71 30.31 0.20 -5.92 16 15 N -0.30 -6.33 12.18 32.99 0.40 -5.93 16 16 C 0.22 4.22 7.09 -154.01 -1.09 3.13 16 17 C -0.06 -1.21 5.21 -27.89 -0.15 -1.36 16 18 C 0.24 5.74 2.81 -27.89 -0.08 5.66 16 19 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 20 O -0.56 -13.18 12.29 -35.23 -0.43 -13.61 16 21 C -0.58 -14.95 8.76 -34.44 -0.30 -15.25 16 22 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 23 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 24 N -0.86 -24.66 12.84 55.43 0.71 -23.95 16 25 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 N -0.47 -7.71 3.21 -121.46 -0.39 -8.10 16 30 C 0.08 0.97 9.33 59.85 0.56 1.53 16 31 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.04 0.38 7.96 -51.93 -0.41 -0.04 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.01 7.96 -51.93 -0.41 0.59 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.12 1.97 5.25 -51.93 -0.27 1.70 16 39 H 0.07 0.82 6.87 -51.93 -0.36 0.46 16 40 H 0.08 0.79 6.18 -51.93 -0.32 0.47 16 41 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 42 H 0.04 0.54 6.93 -51.93 -0.36 0.18 16 43 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 44 H 0.07 1.19 7.26 -51.93 -0.38 0.81 16 45 H 0.34 6.78 9.04 45.56 0.41 7.20 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.08 1.02 7.97 -51.93 -0.41 0.61 16 48 H 0.09 0.98 7.24 -51.93 -0.38 0.61 16 49 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -33.04 385.05 -8.50 -41.55 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.90 Total: 9.40 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.31 Total: 2.61 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.10 Total: -50.65 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -1.17 Total: -24.16 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.04 -8.50 -41.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772169418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.015 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds