Wall clock time and date at job start Sat Apr 11 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99675 * 2 1 4 4 H 1.09001 * 109.57437 * 29.84098 * 3 2 1 5 5 C 1.53095 * 109.52639 * 269.68384 * 3 2 1 6 6 O 1.42894 * 109.41746 * 182.48679 * 5 3 2 7 7 C 1.42910 * 114.09721 * 61.16023 * 6 5 3 8 8 C 1.53096 * 109.41166 * 298.84004 * 7 6 5 9 9 C 1.53174 * 109.16421 * 57.61054 * 8 7 6 10 10 H 1.08999 * 109.54153 * 62.96776 * 9 8 7 11 11 N 1.46900 * 109.54513 * 183.15141 * 9 8 7 12 12 C 1.46897 * 110.99651 * 296.63156 * 11 9 8 13 13 C 1.38578 * 110.99688 * 60.58149 * 11 9 8 14 14 N 1.31214 * 126.47559 * 354.86305 * 13 11 9 15 15 N 1.28530 * 109.85882 * 180.02562 * 14 13 11 16 16 C 1.30294 * 110.05810 * 359.97438 * 15 14 13 17 17 C 1.50701 * 126.35224 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.47271 * 269.96053 * 17 16 15 19 19 H 1.09002 * 109.47406 * 54.99474 * 18 17 16 20 20 O 1.42905 * 109.46822 * 295.00108 * 18 17 16 21 21 C 1.50701 * 109.47275 * 174.99691 * 18 17 16 22 22 H 1.07997 * 119.99624 * 0.02562 * 21 18 17 23 23 C 1.37877 * 119.99731 * 179.97438 * 21 18 17 24 24 N 1.31516 * 120.00636 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 119.99844 * 180.02562 * 23 21 18 26 26 H 1.48496 * 109.47057 * 60.00123 * 25 23 21 27 27 H 1.48492 * 109.47338 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46847 * 300.00349 * 25 23 21 29 29 N 1.36458 * 126.46906 * 174.90713 * 13 11 9 30 30 C 1.46502 * 127.13703 * 359.69842 * 29 13 11 31 31 H 1.08992 * 109.47353 * 300.00069 * 1 2 3 32 32 H 1.09004 * 109.47150 * 60.00491 * 1 2 3 33 33 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47802 * 62.50147 * 5 3 2 35 35 H 1.09003 * 109.48599 * 302.47901 * 5 3 2 36 36 H 1.09004 * 109.47690 * 178.86005 * 7 6 5 37 37 H 1.08996 * 109.47740 * 58.82534 * 7 6 5 38 38 H 1.09004 * 109.52215 * 297.69874 * 8 7 6 39 39 H 1.09001 * 109.51547 * 177.51628 * 8 7 6 40 40 H 1.09005 * 109.46919 * 189.13680 * 12 11 9 41 41 H 1.09006 * 109.47365 * 309.13442 * 12 11 9 42 42 H 1.09005 * 109.47503 * 69.13509 * 12 11 9 43 43 H 1.09001 * 109.46507 * 29.95871 * 17 16 15 44 44 H 1.08998 * 109.46789 * 149.95596 * 17 16 15 45 45 H 0.96698 * 113.99603 * 299.99657 * 20 18 17 46 46 H 0.96994 * 120.00486 * 179.97438 * 24 23 21 47 47 H 1.09004 * 109.46648 * 90.00279 * 30 29 13 48 48 H 1.08997 * 109.47028 * 210.00648 * 30 29 13 49 49 H 1.08994 * 109.46940 * 330.00547 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 2.0014 0.5110 5 6 2.2255 1.7697 -1.4429 6 8 2.8596 3.0503 -1.4403 7 6 4.1471 3.0626 -0.8202 8 6 4.0089 2.6503 0.6477 9 6 3.3606 1.2646 0.7219 10 1 4.0098 0.5321 0.2423 11 7 3.1550 0.8929 2.1282 12 6 4.4375 0.7764 2.8348 13 6 2.3183 1.7967 2.7634 14 7 1.8363 2.9052 2.2531 15 7 1.0970 3.4998 3.1202 16 6 1.0632 2.8113 4.2259 17 6 0.3079 3.1709 5.4794 18 6 1.2024 4.0149 6.3894 19 1 1.5672 4.8816 5.8380 20 8 2.3118 3.2286 6.8289 21 6 0.4095 4.4773 7.5846 22 1 -0.6286 4.1968 7.6852 23 6 1.0096 5.2575 8.5501 24 7 2.2738 5.5987 8.4278 25 14 0.0268 5.8300 10.0320 26 1 -0.4699 4.6491 10.7828 27 1 0.8950 6.6493 10.9152 28 1 -1.1261 6.6473 9.5756 29 7 1.8408 1.7022 4.0382 30 6 2.1011 0.6310 5.0031 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2629 1.8417 -1.9491 35 1 2.8581 1.0519 -1.9652 36 1 4.5687 4.0662 -0.8779 37 1 4.8048 2.3617 -1.3343 38 1 3.3840 3.3735 1.1719 39 1 4.9951 2.6165 1.1108 40 1 4.2706 0.3456 3.8221 41 1 5.1085 0.1324 2.2661 42 1 4.8853 1.7646 2.9405 43 1 -0.5830 3.7408 5.2157 44 1 0.0153 2.2598 6.0011 45 1 2.0612 2.4391 7.3278 46 1 2.6958 6.1478 9.1069 47 1 2.9874 0.8765 5.5881 48 1 1.2443 0.5252 5.6685 49 1 2.2652 -0.3057 4.4705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772169418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:13 Heat of formation + Delta-G solvation = -55.920219 kcal Electronic energy + Delta-G solvation = -32217.407650 eV Core-core repulsion = 27988.480166 eV Total energy + Delta-G solvation = -4228.927485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.04907 -41.09541 -38.39781 -38.21246 -37.93772 -35.88897 -34.25967 -33.17827 -32.37823 -31.40341 -30.03876 -28.58671 -27.56989 -27.52993 -26.81444 -25.18360 -24.03149 -23.58509 -22.42244 -21.50919 -21.02468 -19.14716 -18.29090 -17.84573 -17.63595 -17.29109 -17.16175 -16.66577 -16.56176 -16.30713 -16.15931 -15.96785 -15.65297 -15.34037 -15.10708 -14.82281 -14.77453 -14.44575 -14.36062 -14.18108 -13.80663 -13.74560 -13.24050 -13.08990 -12.98987 -12.88347 -12.80422 -12.63988 -12.60641 -12.40327 -12.16522 -12.11718 -12.04634 -11.61766 -11.26067 -11.23997 -11.05330 -10.94094 -10.71356 -10.65571 -10.23774 -10.17624 -9.14641 -8.13418 -6.39913 0.82758 1.35004 1.43408 1.45600 1.52928 1.81345 2.40436 2.51288 2.66233 3.04815 3.13297 3.42247 3.54767 3.69489 3.84386 3.86057 4.00935 4.05152 4.18904 4.21576 4.23717 4.30136 4.32950 4.33986 4.41021 4.44865 4.47712 4.55398 4.57637 4.59810 4.64089 4.72362 4.75500 4.79957 4.81829 4.90697 4.95636 4.98476 5.10977 5.28332 5.57500 5.62997 5.65924 5.71263 5.99660 6.03245 6.24042 6.32107 6.71758 7.33191 7.52446 7.81143 8.90743 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002970 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.791241 B = 9423.911883 C = 9564.482556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.051 3.949 4 H 0.071 0.929 5 C 0.050 3.950 6 O -0.394 6.394 7 C 0.069 3.931 8 C -0.198 4.198 9 C 0.108 3.892 10 H 0.125 0.875 11 N -0.439 5.439 12 C 0.016 3.984 13 C 0.348 3.652 14 N -0.343 5.343 15 N -0.341 5.341 16 C 0.202 3.798 17 C -0.045 4.045 18 C 0.247 3.753 19 H 0.008 0.992 20 O -0.573 6.573 21 C -0.584 4.584 22 H 0.070 0.930 23 C 0.028 3.972 24 N -0.901 5.901 25 Si 0.960 3.040 26 H -0.261 1.261 27 H -0.289 1.289 28 H -0.271 1.271 29 N -0.469 5.469 30 C 0.073 3.927 31 H 0.015 0.985 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.029 0.971 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.357 0.643 46 H 0.260 0.740 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -16.540 -15.038 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.008 4.008 4 H 0.089 0.911 5 C -0.028 4.028 6 O -0.313 6.313 7 C -0.008 4.008 8 C -0.238 4.238 9 C 0.000 4.000 10 H 0.143 0.857 11 N -0.161 5.161 12 C -0.130 4.130 13 C -0.009 4.009 14 N -0.188 5.188 15 N -0.180 5.180 16 C -0.067 4.067 17 C -0.085 4.085 18 C 0.188 3.812 19 H 0.026 0.974 20 O -0.377 6.377 21 C -0.621 4.621 22 H 0.088 0.912 23 C -0.175 4.175 24 N -0.538 5.538 25 Si 0.785 3.215 26 H -0.185 1.185 27 H -0.215 1.215 28 H -0.196 1.196 29 N -0.162 5.162 30 C -0.069 4.069 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.202 0.798 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.122 0.878 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.332 -15.397 -16.312 22.677 hybrid contribution -0.264 0.166 2.265 2.287 sum 3.069 -15.231 -14.047 20.946 Atomic orbital electron populations 1.22817 0.80502 1.03518 0.99341 1.87834 1.20242 1.26661 1.94994 1.23040 0.95415 0.85613 0.96773 0.91097 1.23007 0.99227 0.85453 0.95083 1.87952 1.33470 1.30987 1.78908 1.22625 0.84453 1.03397 0.90365 1.23127 1.02321 0.98146 1.00192 1.21916 0.96472 0.96907 0.84663 0.85688 1.59061 1.13375 1.40653 1.03055 1.22752 0.87922 1.01764 1.00565 1.22871 1.00759 0.93103 0.84176 1.74375 1.15304 1.04439 1.24690 1.73888 1.18957 1.25312 0.99824 1.25002 0.97518 0.85859 0.98321 1.20856 0.97637 1.01981 0.87999 1.19007 0.83575 0.87930 0.90664 0.97421 1.86556 1.36032 1.40151 1.74986 1.21972 0.98265 1.34483 1.07428 0.91201 1.25892 0.95493 0.94949 1.01174 1.70219 1.12537 1.35727 1.35274 0.85601 0.78385 0.78701 0.78820 1.18537 1.21516 1.19630 1.46093 1.37132 1.20707 1.12314 1.22372 1.04643 0.88050 0.91814 0.96644 0.93129 0.87553 0.88489 0.90458 0.88123 0.90317 0.90319 0.89420 0.89776 0.86338 0.95248 0.89106 0.88115 0.79808 0.93084 0.89475 0.87841 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.82 113.37 1.23 1.97 16 2 O -0.38 -9.33 10.28 -148.98 -1.53 -10.86 16 3 C 0.05 1.30 1.97 30.69 0.06 1.36 16 4 H 0.07 2.39 5.13 -2.39 -0.01 2.37 16 5 C 0.05 1.10 6.47 72.01 0.47 1.56 16 6 O -0.39 -10.18 10.77 -148.98 -1.60 -11.79 16 7 C 0.07 1.41 6.84 72.01 0.49 1.90 16 8 C -0.20 -4.83 4.74 30.68 0.15 -4.68 16 9 C 0.11 2.49 1.99 45.03 0.09 2.58 16 10 H 0.13 2.22 8.08 -2.39 -0.02 2.20 16 11 N -0.44 -11.01 4.76 -706.13 -3.36 -14.37 16 12 C 0.02 0.32 8.84 127.69 1.13 1.45 16 13 C 0.35 11.46 6.14 260.11 1.60 13.06 16 14 N -0.34 -13.56 6.71 -58.00 -0.39 -13.95 16 15 N -0.34 -15.16 12.18 -49.53 -0.60 -15.76 16 16 C 0.20 8.01 7.09 137.64 0.98 8.98 16 17 C -0.04 -1.75 5.21 29.85 0.16 -1.60 16 18 C 0.25 12.18 2.81 29.85 0.08 12.27 16 19 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 20 O -0.57 -27.08 12.29 -148.98 -1.83 -28.91 16 21 C -0.58 -30.45 8.76 25.60 0.22 -30.23 16 22 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 23 C 0.03 1.49 5.40 84.65 0.46 1.95 16 24 N -0.90 -52.99 12.84 21.45 0.28 -52.72 16 25 Si 0.96 41.97 29.54 68.60 2.03 44.00 16 26 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 27 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 N -0.47 -15.21 3.21 -538.18 -1.73 -16.94 16 30 C 0.07 1.62 9.33 127.77 1.19 2.82 16 31 H 0.01 0.39 8.09 -2.39 -0.02 0.37 16 32 H 0.05 0.94 7.96 -2.39 -0.02 0.92 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 2.00 7.96 -2.39 -0.02 1.98 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 2.67 5.25 -2.39 -0.01 2.66 16 39 H 0.09 1.83 6.87 -2.39 -0.02 1.81 16 40 H 0.08 1.51 6.18 -2.38 -0.01 1.49 16 41 H 0.12 1.49 8.04 -2.38 -0.02 1.47 16 42 H 0.03 0.67 6.93 -2.38 -0.02 0.65 16 43 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 44 H 0.10 3.27 7.26 -2.39 -0.02 3.25 16 45 H 0.36 13.96 9.04 -74.06 -0.67 13.29 16 46 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 47 H 0.09 1.94 7.97 -2.38 -0.02 1.92 16 48 H 0.10 2.02 7.24 -2.39 -0.02 2.00 16 49 H 0.11 1.91 7.86 -2.39 -0.02 1.89 16 Total: -1.00 -74.95 385.05 -0.15 -75.10 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.30 Total: 32.80 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 8.29 Total: 13.40 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -5.81 Total: -113.74 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -4.97 Total: -51.56 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -74.95 -0.15 -75.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772169418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.182 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds