Wall clock time and date at job start Sat Apr 11 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99843 * 2 1 4 4 H 1.08994 * 109.57656 * 330.15545 * 3 2 1 5 5 C 1.53095 * 109.52200 * 90.32222 * 3 2 1 6 6 O 1.42895 * 109.41568 * 177.51352 * 5 3 2 7 7 C 1.42902 * 114.09785 * 298.83742 * 6 5 3 8 8 C 1.53095 * 109.41528 * 61.15752 * 7 6 5 9 9 C 1.53176 * 109.16286 * 302.39400 * 8 7 6 10 10 H 1.08999 * 109.54288 * 297.11123 * 9 8 7 11 11 N 1.46904 * 109.53874 * 176.93421 * 9 8 7 12 12 C 1.46890 * 111.00201 * 306.04243 * 11 9 8 13 13 C 1.38581 * 111.00011 * 70.00216 * 11 9 8 14 14 N 1.31216 * 126.47107 * 0.02562 * 13 11 9 15 15 N 1.28530 * 109.85972 * 179.97438 * 14 13 11 16 16 C 1.30299 * 110.05195 * 359.97438 * 15 14 13 17 17 C 1.50699 * 126.34647 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.47143 * 89.97503 * 17 16 15 19 19 H 1.09002 * 109.47239 * 54.99765 * 18 17 16 20 20 O 1.42904 * 109.47026 * 294.99670 * 18 17 16 21 21 C 1.50698 * 109.46779 * 174.99905 * 18 17 16 22 22 H 1.08000 * 120.00191 * 359.97438 * 21 18 17 23 23 C 1.37881 * 119.99624 * 179.97438 * 21 18 17 24 24 N 1.31516 * 120.00357 * 359.97438 * 23 21 18 25 25 Si 1.86798 * 119.99775 * 180.02562 * 23 21 18 26 26 H 1.48495 * 109.47574 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47120 * 120.00136 * 25 23 21 28 28 H 1.48508 * 109.47285 * 239.99803 * 25 23 21 29 29 N 1.36445 * 126.47179 * 179.70724 * 13 11 9 30 30 C 1.46504 * 127.14105 * 0.03559 * 29 13 11 31 31 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46846 * 299.99422 * 1 2 3 33 33 H 1.08993 * 109.47320 * 59.99845 * 1 2 3 34 34 H 1.09010 * 109.47455 * 297.49458 * 5 3 2 35 35 H 1.09000 * 109.48076 * 57.52439 * 5 3 2 36 36 H 1.08995 * 109.47976 * 301.17466 * 7 6 5 37 37 H 1.09004 * 109.48145 * 181.14340 * 7 6 5 38 38 H 1.09001 * 109.52293 * 182.48153 * 8 7 6 39 39 H 1.09007 * 109.52035 * 62.29920 * 8 7 6 40 40 H 1.08999 * 109.47381 * 60.00216 * 12 11 9 41 41 H 1.08997 * 109.47298 * 180.02562 * 12 11 9 42 42 H 1.09002 * 109.47287 * 300.00301 * 12 11 9 43 43 H 1.08999 * 109.47086 * 209.97290 * 17 16 15 44 44 H 1.08992 * 109.47173 * 329.97208 * 17 16 15 45 45 H 0.96703 * 113.99934 * 300.00512 * 20 18 17 46 46 H 0.96992 * 120.00350 * 179.97438 * 24 23 21 47 47 H 1.08999 * 109.46951 * 89.99202 * 30 29 13 48 48 H 1.08989 * 109.47429 * 210.00111 * 30 29 13 49 49 H 1.09005 * 109.46672 * 330.00429 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0014 -0.5111 5 6 2.2257 1.7695 1.4429 6 8 2.8598 3.0501 1.4404 7 6 4.1472 3.0624 0.8203 8 6 4.0091 2.6503 -0.6476 9 6 3.3606 1.2645 -0.7219 10 1 4.0092 0.5322 -0.2410 11 7 3.1570 0.8921 -2.1283 12 6 2.4022 1.9295 -2.8436 13 6 4.3665 0.6370 -2.7547 14 7 5.5575 0.7049 -2.2081 15 7 6.4548 0.4040 -3.0777 16 6 5.8941 0.1280 -4.2211 17 6 6.6025 -0.2703 -5.4902 18 6 6.7468 -1.7928 -5.5373 19 1 5.7659 -2.2545 -5.4238 20 8 7.6017 -2.2234 -4.4762 21 6 7.3437 -2.2000 -6.8598 22 1 7.5945 -1.4482 -7.5934 23 6 7.5694 -3.5325 -7.1332 24 7 7.2644 -4.4480 -6.2396 25 14 8.3099 -4.0372 -8.7721 26 1 8.5613 -2.8272 -9.5955 27 1 9.5905 -4.7518 -8.5377 28 1 7.3662 -4.9341 -9.4865 29 7 4.5435 0.2619 -4.0545 30 6 3.5027 0.0494 -5.0635 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.2630 1.8416 1.9491 35 1 2.8583 1.0516 1.9650 36 1 4.8049 2.3616 1.3343 37 1 4.5689 4.0659 0.8780 38 1 4.9952 2.6164 -1.1108 39 1 3.3841 3.3734 -1.1718 40 1 2.9526 2.8696 -2.8073 41 1 2.2652 1.6283 -3.8821 42 1 1.4281 2.0604 -2.3721 43 1 6.0239 0.0666 -6.3503 44 1 7.5905 0.1892 -5.5144 45 1 8.4933 -1.8508 -4.5136 46 1 7.4229 -5.3853 -6.4320 47 1 3.3105 0.9845 -5.5896 48 1 3.8352 -0.7062 -5.7750 49 1 2.5879 -0.2879 -4.5761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772169421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:19 Heat of formation + Delta-G solvation = -36.549752 kcal Electronic energy + Delta-G solvation = -31476.942118 eV Core-core repulsion = 27248.854600 eV Total energy + Delta-G solvation = -4228.087518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62026 -40.37568 -37.52528 -37.34588 -35.99266 -34.66007 -32.19135 -32.00797 -30.96680 -30.56633 -28.61600 -27.47497 -26.85629 -26.42515 -25.22556 -24.28838 -23.44055 -21.64985 -21.08501 -20.11108 -19.87824 -17.38082 -17.18755 -16.93519 -16.57438 -16.42897 -16.17275 -15.65814 -15.41610 -15.02472 -14.65857 -14.62567 -14.45440 -14.29844 -13.82642 -13.71420 -13.55780 -13.27356 -13.23272 -13.04875 -12.86776 -12.59856 -12.14849 -11.91798 -11.65782 -11.60491 -11.48279 -11.26997 -11.12575 -11.04326 -10.90168 -10.75124 -10.67746 -10.28838 -10.21766 -10.00893 -9.78602 -9.63366 -9.47436 -9.09918 -8.64069 -8.30237 -7.75095 -6.05678 -4.26060 2.16804 2.48915 3.23591 3.24680 3.31411 3.33003 3.35585 3.65389 3.73959 4.33862 4.35728 4.48761 4.57198 4.69520 4.77013 4.85628 4.89115 4.95234 5.03386 5.03783 5.10572 5.13011 5.16797 5.21432 5.31868 5.35992 5.40503 5.42161 5.45603 5.48829 5.59353 5.62370 5.70522 5.79484 5.91657 6.13024 6.20401 6.32774 6.46288 6.61050 6.66786 6.73322 6.91718 7.03943 7.43290 7.60104 7.77142 8.07659 8.77081 9.26068 9.39326 9.54846 10.98175 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.002626 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.432716 B =10660.276657 C =11048.466112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.065 3.935 4 H 0.071 0.929 5 C 0.043 3.957 6 O -0.379 6.379 7 C 0.065 3.935 8 C -0.186 4.186 9 C 0.105 3.895 10 H 0.109 0.891 11 N -0.436 5.436 12 C 0.010 3.990 13 C 0.337 3.663 14 N -0.324 5.324 15 N -0.285 5.285 16 C 0.215 3.785 17 C -0.064 4.064 18 C 0.240 3.760 19 H 0.051 0.949 20 O -0.557 6.557 21 C -0.576 4.576 22 H 0.059 0.941 23 C 0.080 3.920 24 N -0.856 5.856 25 Si 0.891 3.109 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.283 1.283 29 N -0.483 5.483 30 C 0.075 3.925 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.349 0.651 46 H 0.261 0.739 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.105 15.314 9.669 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.006 3.994 4 H 0.089 0.911 5 C -0.035 4.035 6 O -0.298 6.298 7 C -0.013 4.013 8 C -0.225 4.225 9 C -0.003 4.003 10 H 0.127 0.873 11 N -0.157 5.157 12 C -0.138 4.138 13 C -0.019 4.019 14 N -0.169 5.169 15 N -0.122 5.122 16 C -0.052 4.052 17 C -0.104 4.104 18 C 0.181 3.819 19 H 0.068 0.932 20 O -0.359 6.359 21 C -0.614 4.614 22 H 0.077 0.923 23 C -0.127 4.127 24 N -0.491 5.491 25 Si 0.718 3.282 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.209 1.209 29 N -0.178 5.178 30 C -0.069 4.069 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.193 0.807 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.118 0.882 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.876 14.551 10.991 23.534 hybrid contribution -0.082 0.195 -2.327 2.337 sum -14.958 14.746 8.664 22.721 Atomic orbital electron populations 1.22811 0.81203 1.02969 0.99629 1.88045 1.19363 1.25870 1.94801 1.22847 0.94580 0.85923 0.96024 0.91138 1.23041 0.98899 0.85870 0.95689 1.87934 1.32654 1.29935 1.79258 1.22586 0.84629 1.02688 0.91354 1.22952 1.04000 0.96613 0.98922 1.21759 0.95686 0.97249 0.85611 0.87343 1.58751 1.12285 1.42094 1.02592 1.22740 0.98418 0.93007 0.99610 1.22384 0.92255 1.04020 0.83290 1.74460 0.94797 1.22749 1.24876 1.73956 1.23674 1.17450 0.97158 1.25231 0.79094 1.01571 0.99349 1.21215 0.98984 1.02776 0.87453 1.19282 0.92038 0.83784 0.86772 0.93152 1.86593 1.24686 1.73560 1.51053 1.21636 1.45590 0.92641 1.01503 0.92254 1.25047 0.94515 0.96669 0.96438 1.70095 1.44862 1.00761 1.33369 0.86593 0.79082 0.78683 0.83869 1.19641 1.20790 1.20936 1.45995 1.08467 1.53442 1.09925 1.22097 0.90407 1.03086 0.91275 0.89418 0.94287 0.94062 0.88502 0.91747 0.92159 0.88320 0.87910 0.90955 0.93621 0.90540 0.90044 0.90541 0.89205 0.80725 0.92915 0.90865 0.88223 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.15 10.28 -35.23 -0.36 -4.51 16 3 C 0.07 0.67 2.11 -26.59 -0.06 0.61 16 4 H 0.07 0.64 6.07 -51.93 -0.32 0.32 16 5 C 0.04 0.40 6.47 37.21 0.24 0.64 16 6 O -0.38 -3.93 10.77 -35.23 -0.38 -4.31 16 7 C 0.06 0.63 6.84 37.21 0.25 0.88 16 8 C -0.19 -2.05 4.69 -26.59 -0.12 -2.18 16 9 C 0.11 1.31 1.64 -67.53 -0.11 1.20 16 10 H 0.11 1.64 7.76 -51.93 -0.40 1.24 16 11 N -0.44 -5.88 4.71 -174.55 -0.82 -6.70 16 12 C 0.01 0.10 8.60 60.06 0.52 0.61 16 13 C 0.34 5.72 6.78 -318.89 -2.16 3.56 16 14 N -0.32 -6.35 9.63 30.31 0.29 -6.06 16 15 N -0.28 -6.11 12.18 32.99 0.40 -5.71 16 16 C 0.21 4.26 7.09 -154.01 -1.09 3.16 16 17 C -0.06 -1.26 5.05 -27.88 -0.14 -1.40 16 18 C 0.24 5.92 2.81 -27.88 -0.08 5.84 16 19 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 20 O -0.56 -14.77 12.48 -35.23 -0.44 -15.21 16 21 C -0.58 -15.08 8.76 -34.44 -0.30 -15.38 16 22 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 23 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 24 N -0.86 -25.03 12.84 55.43 0.71 -24.32 16 25 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 N -0.48 -8.16 3.21 -121.46 -0.39 -8.55 16 30 C 0.07 0.93 9.18 59.85 0.55 1.48 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.24 7.96 -51.93 -0.41 -0.17 16 33 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.10 0.73 7.96 -51.92 -0.41 0.31 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.38 6.41 -51.93 -0.33 1.05 16 39 H 0.07 0.73 6.17 -51.92 -0.32 0.41 16 40 H 0.05 0.45 6.15 -51.93 -0.32 0.13 16 41 H 0.08 0.70 5.31 -51.93 -0.28 0.42 16 42 H 0.08 0.65 6.41 -51.93 -0.33 0.32 16 43 H 0.08 1.34 7.95 -51.93 -0.41 0.92 16 44 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 45 H 0.35 8.33 9.04 45.56 0.41 8.74 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.07 0.70 7.78 -51.93 -0.40 0.30 16 48 H 0.10 1.33 7.90 -51.93 -0.41 0.92 16 49 H 0.09 0.99 7.65 -51.93 -0.40 0.60 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -34.46 386.70 -8.53 -42.99 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.84 Total: 8.57 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.51 Total: 2.43 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.19 Total: -51.34 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -1.18 Total: -24.03 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.46 -8.53 -42.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772169421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.440 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds