Wall clock time and date at job start Sat Apr 11 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34775 * 120.00044 * 2 1 4 4 O 1.21284 * 120.00002 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00427 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47731 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47504 * 184.26645 * 6 5 3 8 8 H 1.09000 * 109.58806 * 301.80905 * 7 6 5 9 9 C 1.53194 * 109.58051 * 62.23003 * 7 6 5 10 10 C 1.53050 * 109.30819 * 174.42128 * 9 7 6 11 11 C 1.53042 * 109.53964 * 298.63554 * 10 9 7 12 12 C 1.53194 * 109.30917 * 61.36312 * 11 10 9 13 13 N 1.46917 * 108.77797 * 305.36490 * 12 11 10 14 14 C 1.34775 * 120.63131 * 233.88506 * 13 12 11 15 15 O 1.21594 * 120.00264 * 174.30523 * 14 13 12 16 16 N 1.34774 * 120.00258 * 354.30148 * 14 13 12 17 17 C 1.46499 * 120.00377 * 175.08522 * 16 14 13 18 18 C 1.50700 * 109.47024 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00429 * 0.02562 * 18 17 16 20 20 N 1.34785 * 120.00053 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00032 * 180.02562 * 20 18 17 22 22 H 1.08006 * 120.00384 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00261 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99874 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00419 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47311 * 59.99904 * 25 23 21 27 27 H 1.48498 * 109.47111 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46997 * 299.99711 * 25 23 21 29 29 H 1.09002 * 109.47284 * 59.99598 * 1 2 3 30 30 H 1.08995 * 109.46678 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46767 * 299.99469 * 1 2 3 32 32 H 0.96999 * 120.00095 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47485 * 59.99748 * 5 3 2 34 34 H 1.09002 * 109.46811 * 300.00274 * 5 3 2 35 35 H 1.09002 * 109.46712 * 64.26781 * 6 5 3 36 36 H 1.09001 * 109.46854 * 304.26948 * 6 5 3 37 37 H 1.09000 * 109.50116 * 294.37119 * 9 7 6 38 38 H 1.08998 * 109.49858 * 54.43944 * 9 7 6 39 39 H 1.09000 * 109.45957 * 58.65575 * 10 9 7 40 40 H 1.08998 * 109.45814 * 178.61531 * 10 9 7 41 41 H 1.08997 * 109.49711 * 181.31738 * 11 10 9 42 42 H 1.09001 * 109.49593 * 301.38525 * 11 10 9 43 43 H 1.09007 * 109.58040 * 185.57654 * 12 11 10 44 44 H 1.08995 * 109.58307 * 65.15825 * 12 11 10 45 45 H 0.97007 * 119.99649 * 355.08823 * 16 14 13 46 46 H 1.08998 * 109.46956 * 299.99860 * 17 16 14 47 47 H 1.08993 * 109.46843 * 60.00305 * 17 16 14 48 48 H 0.97000 * 119.99591 * 0.02562 * 20 18 17 49 49 H 0.96995 * 120.00442 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1559 2.6097 0.0002 7 6 5.6821 2.6112 -0.1077 8 1 6.1077 2.0482 0.7230 9 6 6.1036 1.9719 -1.4346 10 6 7.6196 2.1014 -1.5997 11 6 8.0063 3.5818 -1.6323 12 6 7.6063 4.2392 -0.3077 13 7 6.1772 3.9940 -0.0707 14 6 5.3354 5.0185 0.1707 15 8 4.1402 4.8146 0.2625 16 7 5.8184 6.2689 0.3104 17 6 4.8968 7.3971 0.4652 18 6 5.6848 8.6743 0.6023 19 8 6.8971 8.6452 0.5731 20 7 5.0426 9.8493 0.7563 21 6 5.7594 11.0112 0.8805 22 1 6.8389 10.9851 0.8554 23 6 5.0974 12.2224 1.0399 24 7 3.7840 12.2541 1.0710 25 14 6.0742 13.8055 1.2098 26 1 6.9046 14.0077 -0.0046 27 1 5.1400 14.9490 1.3673 28 1 6.9546 13.7183 2.4026 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.9500 -0.8400 -0.0004 33 1 4.0090 0.6536 -0.8908 34 1 4.0095 0.6532 0.8891 35 1 3.8567 3.1003 0.9264 36 1 3.7311 3.1457 -0.8486 37 1 5.8263 0.9178 -1.4349 38 1 5.6027 2.4801 -2.2586 39 1 8.1190 1.6141 -0.7623 40 1 7.9254 1.6256 -2.5314 41 1 9.0833 3.6735 -1.7734 42 1 7.4883 4.0751 -2.4548 43 1 7.7886 5.3125 -0.3628 44 1 8.1908 3.8085 0.5051 45 1 6.7763 6.4219 0.3085 46 1 4.2503 7.4608 -0.4100 47 1 4.2877 7.2490 1.3569 48 1 4.0731 9.8727 0.7793 49 1 3.3218 13.0995 1.1826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358318334.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:35 Heat of formation + Delta-G solvation = -121.838306 kcal Electronic energy + Delta-G solvation = -30122.856187 eV Core-core repulsion = 25891.070280 eV Total energy + Delta-G solvation = -4231.785907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83998 -40.61315 -40.19097 -38.50811 -36.40801 -35.84247 -35.53307 -34.41814 -33.72885 -33.34162 -30.93525 -29.27861 -28.03409 -26.63461 -25.59829 -25.06539 -22.67739 -22.05992 -21.43066 -21.15905 -20.63514 -20.06082 -18.96132 -18.12290 -17.45731 -17.25944 -17.01020 -16.74898 -16.64940 -16.48532 -16.02236 -15.88710 -15.47756 -15.28832 -15.26949 -15.00191 -14.60644 -14.47542 -14.19896 -14.04148 -13.89821 -13.54688 -13.47697 -13.34739 -13.24365 -13.01351 -12.90153 -12.89202 -12.47969 -12.15432 -12.13923 -11.86469 -11.77689 -11.57298 -11.52851 -11.38642 -10.87677 -10.57246 -10.30558 -10.15520 -10.10238 -10.05372 -9.40913 -8.51535 -6.02440 1.37352 1.41149 1.51881 1.59071 1.72034 1.88078 2.15588 2.27034 2.36801 2.86324 3.15176 3.15956 3.76773 3.83690 3.96804 4.00639 4.11799 4.19430 4.22742 4.33593 4.38091 4.40443 4.43717 4.44595 4.59063 4.59603 4.63447 4.75099 4.80013 4.91946 4.95888 5.00465 5.08816 5.17660 5.26375 5.33271 5.36189 5.38218 5.48833 5.53396 5.55785 5.85298 5.90958 5.94591 6.46345 6.64199 6.96000 7.01605 7.38415 7.41136 7.60149 7.92109 8.65350 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.002389 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.267657 B =11717.281001 C =13717.908858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.725 5.725 3 C 0.498 3.502 4 O -0.592 6.592 5 C -0.138 4.138 6 C -0.081 4.081 7 C 0.162 3.838 8 H 0.096 0.904 9 C -0.129 4.129 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.103 3.897 13 N -0.623 5.623 14 C 0.696 3.304 15 O -0.610 6.610 16 N -0.729 5.729 17 C 0.143 3.857 18 C 0.435 3.565 19 O -0.623 6.623 20 N -0.559 5.559 21 C -0.338 4.338 22 H 0.088 0.912 23 C -0.013 4.013 24 N -0.918 5.918 25 Si 1.000 3.000 26 H -0.268 1.268 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.042 0.958 30 H 0.114 0.886 31 H 0.041 0.959 32 H 0.421 0.579 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.406 0.594 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.398 0.602 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 -30.762 -4.192 31.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.379 5.379 3 C 0.286 3.714 4 O -0.472 6.472 5 C -0.178 4.178 6 C -0.120 4.120 7 C 0.059 3.941 8 H 0.114 0.886 9 C -0.167 4.167 10 C -0.150 4.150 11 C -0.171 4.171 12 C -0.019 4.019 13 N -0.361 5.361 14 C 0.398 3.602 15 O -0.491 6.491 16 N -0.390 5.390 17 C 0.014 3.986 18 C 0.222 3.778 19 O -0.511 6.511 20 N -0.195 5.195 21 C -0.467 4.467 22 H 0.106 0.894 23 C -0.213 4.213 24 N -0.558 5.558 25 Si 0.823 3.177 26 H -0.193 1.193 27 H -0.196 1.196 28 H -0.194 1.194 29 H 0.060 0.940 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.258 0.742 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.246 0.754 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.232 0.768 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.098 -30.008 -4.131 30.449 hybrid contribution -0.061 1.253 0.102 1.259 sum 3.037 -28.755 -4.028 29.194 Atomic orbital electron populations 1.21608 0.79710 1.04050 1.00798 1.45762 1.07970 1.08776 1.75351 1.21454 0.91937 0.83333 0.74715 1.90772 1.71811 1.33701 1.50875 1.21888 0.89559 0.99392 1.06924 1.21585 0.93463 0.93827 1.03108 1.21367 0.93626 0.79703 0.99392 0.88633 1.22091 0.97039 1.02100 0.95504 1.21510 0.94856 0.95043 1.03606 1.21918 1.02384 0.97116 0.95699 1.21881 0.79825 1.00895 0.99309 1.47361 1.08521 1.05607 1.74578 1.16156 0.85108 0.80724 0.78251 1.91047 1.15145 1.82948 1.59935 1.45032 1.10848 1.04644 1.78464 1.20511 0.91430 0.83502 1.03186 1.20353 0.88299 0.85583 0.83574 1.90447 1.15171 1.87022 1.58449 1.41847 1.09655 1.05411 1.62552 1.19724 0.92787 0.84619 1.49551 0.89402 1.26197 0.96832 1.02513 0.95803 1.69690 1.08063 1.29207 1.48813 0.84887 0.77646 0.76054 0.79137 1.19344 1.19632 1.19361 0.93959 0.86715 0.94059 0.74167 0.85669 0.85881 0.92750 0.94113 0.87395 0.93517 0.89838 0.90165 0.88760 0.93357 0.91490 0.89103 0.75380 0.89720 0.89611 0.76815 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.70 127.77 1.37 2.50 16 2 N -0.73 -9.99 5.71 -484.52 -2.77 -12.75 16 3 C 0.50 11.47 7.83 87.66 0.69 12.16 16 4 O -0.59 -21.84 15.93 -3.04 -0.05 -21.89 16 5 C -0.14 -2.14 5.51 29.85 0.16 -1.97 16 6 C -0.08 -2.14 2.46 30.59 0.08 -2.06 16 7 C 0.16 3.16 2.99 44.98 0.13 3.29 16 8 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 9 C -0.13 -1.73 4.91 30.68 0.15 -1.58 16 10 C -0.11 -1.19 5.88 30.62 0.18 -1.01 16 11 C -0.13 -2.01 6.08 30.67 0.19 -1.83 16 12 C 0.10 2.05 6.34 86.37 0.55 2.60 16 13 N -0.62 -16.06 2.97 -812.91 -2.42 -18.47 16 14 C 0.70 24.75 8.21 179.06 1.47 26.22 16 15 O -0.61 -25.84 11.75 -4.01 -0.05 -25.89 16 16 N -0.73 -27.07 5.39 -482.31 -2.60 -29.66 16 17 C 0.14 5.85 6.16 85.63 0.53 6.37 16 18 C 0.43 21.30 7.85 87.66 0.69 21.99 16 19 O -0.62 -33.37 15.24 -3.07 -0.05 -33.41 16 20 N -0.56 -29.52 5.29 -306.98 -1.62 -31.14 16 21 C -0.34 -19.16 9.68 84.04 0.81 -18.34 16 22 H 0.09 5.18 7.16 -2.91 -0.02 5.16 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 25 Si 1.00 42.72 29.55 68.60 2.03 44.75 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.42 1.98 8.83 -92.71 -0.82 1.16 16 33 H 0.13 1.06 6.41 -2.39 -0.02 1.04 16 34 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.91 6.34 -2.39 -0.02 1.90 16 36 H 0.04 1.42 6.96 -2.39 -0.02 1.41 16 37 H 0.11 0.72 6.70 -2.39 -0.02 0.70 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 1.58 5.75 -2.38 -0.01 1.56 16 44 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.41 14.64 5.03 -92.70 -0.47 14.17 16 46 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 47 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 48 H 0.40 20.41 7.90 -92.71 -0.73 19.68 16 49 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -83.95 391.56 -0.79 -84.75 By element: Atomic # 1 Polarization: 46.79 SS G_CDS: -1.02 Total: 45.77 kcal Atomic # 6 Polarization: 40.66 SS G_CDS: 7.46 Total: 48.12 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -9.12 Total: -142.20 kcal Atomic # 8 Polarization: -81.05 SS G_CDS: -0.14 Total: -81.19 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -83.95 -0.79 -84.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358318334.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.092 kcal (2) G-P(sol) polarization free energy of solvation -83.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds