Wall clock time and date at job start Sat Apr 11 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86796 * 120.00069 * 2 1 4 4 H 1.48494 * 109.47237 * 269.99978 * 3 2 1 5 5 H 1.48501 * 109.47106 * 30.00041 * 3 2 1 6 6 H 1.48502 * 109.47183 * 150.00054 * 3 2 1 7 7 C 1.38801 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99858 * 179.97438 * 7 2 1 10 10 C 1.81005 * 99.99950 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47024 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00074 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00093 * 179.97438 * 11 10 9 14 14 C 1.44678 * 118.54711 * 0.02562 * 13 11 10 15 15 C 1.54942 * 109.52149 * 269.08159 * 14 13 11 16 16 C 1.47541 * 109.73634 * 290.51816 * 15 14 13 17 17 N 1.46258 * 114.37372 * 62.21488 * 16 15 14 18 18 C 1.46905 * 111.00230 * 148.56168 * 17 16 15 19 19 C 1.52999 * 109.46743 * 293.84324 * 18 17 16 20 20 C 1.52992 * 109.47467 * 296.71660 * 19 18 17 21 21 C 1.52999 * 109.47467 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.47108 * 60.00017 * 21 20 19 23 23 C 1.53001 * 109.47052 * 300.00480 * 22 21 20 24 24 C 1.52994 * 109.47286 * 59.99606 * 23 22 21 25 25 C 1.44766 * 110.64693 * 272.25872 * 17 16 15 26 26 C 1.47776 * 118.55256 * 179.73601 * 13 11 10 27 27 H 0.96999 * 119.99903 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47063 * 299.99904 * 10 9 7 29 29 H 1.09000 * 109.46679 * 60.00152 * 10 9 7 30 30 H 1.09006 * 109.45829 * 29.09338 * 14 13 11 31 31 H 1.08998 * 109.46741 * 149.07164 * 14 13 11 32 32 H 1.09004 * 109.42937 * 50.60087 * 15 14 13 33 33 H 1.09002 * 109.42869 * 170.49270 * 15 14 13 34 34 H 1.08996 * 108.50594 * 183.48222 * 16 15 14 35 35 H 1.09007 * 108.50210 * 301.10781 * 16 15 14 36 36 H 1.09001 * 109.46757 * 53.84363 * 18 17 16 37 37 H 1.08998 * 109.47372 * 173.84229 * 18 17 16 38 38 H 1.09004 * 109.47107 * 56.72258 * 19 18 17 39 39 H 1.09004 * 109.47445 * 300.00391 * 20 19 18 40 40 H 1.09004 * 109.46695 * 60.00225 * 20 19 18 41 41 H 1.09001 * 109.46999 * 299.99841 * 21 20 19 42 42 H 1.09003 * 109.47497 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.47522 * 179.97438 * 22 21 20 44 44 H 1.09007 * 109.46933 * 59.99845 * 22 21 20 45 45 H 1.08998 * 109.46631 * 299.99174 * 23 22 21 46 46 H 1.09004 * 109.46804 * 179.97438 * 23 22 21 47 47 H 1.09003 * 109.47227 * 180.02562 * 24 23 22 48 48 H 1.09007 * 109.47331 * 60.00247 * 24 23 22 49 49 H 1.08999 * 109.43730 * 214.22920 * 25 17 16 50 50 H 1.09000 * 109.43149 * 334.13900 * 25 17 16 51 51 H 1.08998 * 109.06187 * 258.65504 * 26 13 11 52 52 H 1.09007 * 109.05848 * 17.58127 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0014 9 16 3.7724 -1.2021 -0.0012 10 6 4.0867 -2.9846 -0.0025 11 6 5.5731 -3.2326 -0.0039 12 8 6.3441 -2.2964 -0.0035 13 7 6.0458 -4.4947 -0.0045 14 6 5.0981 -5.5879 -0.0044 15 6 4.7773 -5.9949 1.4558 16 6 5.9593 -6.6327 2.0663 17 7 7.1320 -5.7640 2.1621 18 6 7.9431 -6.1021 3.3394 19 6 7.1533 -5.7850 4.6108 20 6 6.8803 -4.2812 4.6800 21 6 6.0900 -3.9641 5.9511 22 6 6.9009 -4.3921 7.1759 23 6 7.1739 -5.8959 7.1067 24 6 7.9642 -6.2129 5.8356 25 6 7.9211 -5.8362 0.9505 26 6 7.5090 -4.7010 -0.0119 27 1 -0.4850 0.8400 0.0004 28 1 3.6441 -3.4322 0.8874 29 1 3.6434 -3.4310 -0.8927 30 1 4.1813 -5.2738 -0.5036 31 1 5.5259 -6.4397 -0.5331 32 1 4.5077 -5.1076 2.0286 33 1 3.9438 -6.6973 1.4616 34 1 5.6931 -6.9663 3.0693 35 1 6.2266 -7.5066 1.4720 36 1 8.1879 -7.1641 3.3190 37 1 8.8626 -5.5170 3.3274 38 1 6.2069 -6.3257 4.5951 39 1 7.8266 -3.7404 4.6957 40 1 6.3022 -3.9764 3.8076 41 1 5.1436 -4.5048 5.9348 42 1 5.8951 -2.8928 6.0001 43 1 6.3381 -4.1658 8.0815 44 1 7.8473 -3.8514 7.1921 45 1 6.2276 -6.4366 7.0906 46 1 7.7520 -6.2007 7.9791 47 1 8.1583 -7.2844 5.7862 48 1 8.9106 -5.6723 5.8518 49 1 8.9776 -5.7355 1.1992 50 1 7.7528 -6.7974 0.4649 51 1 7.8280 -4.9528 -1.0233 52 1 8.0002 -3.7776 0.2954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363392667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:40 Heat of formation + Delta-G solvation = -66.327269 kcal Electronic energy + Delta-G solvation = -28960.335078 eV Core-core repulsion = 25277.249524 eV Total energy + Delta-G solvation = -3683.085554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33278 -40.04951 -38.59035 -36.25250 -34.66966 -33.82571 -32.83557 -31.57561 -31.05411 -28.74976 -27.82862 -27.17652 -25.59678 -23.47530 -23.26647 -22.31721 -21.22024 -20.53380 -20.32128 -19.42719 -18.22062 -17.52359 -17.09077 -16.89452 -16.42295 -16.29652 -16.01738 -15.74902 -15.38605 -15.15229 -14.98986 -14.87980 -14.82564 -14.44770 -14.25397 -14.00431 -13.64778 -13.43155 -13.40193 -13.29419 -13.02076 -13.01471 -12.77515 -12.68122 -12.55814 -12.42349 -12.26375 -11.97932 -11.88324 -11.84668 -11.72848 -11.57911 -11.16946 -11.15007 -10.91738 -10.85590 -10.81008 -10.50549 -9.55482 -9.11331 -8.98735 -8.51558 -6.21761 0.99531 1.30332 1.46549 1.55091 1.63717 2.17390 2.25445 2.70544 2.86653 2.95232 3.65306 3.70769 3.87927 3.90224 3.93242 4.01398 4.05762 4.16799 4.20086 4.23772 4.36009 4.43096 4.43784 4.50816 4.53395 4.58862 4.62418 4.65202 4.67557 4.70863 4.80822 4.84010 4.87403 4.90330 4.95348 5.00764 5.02225 5.10203 5.21138 5.27827 5.29344 5.35322 5.36871 5.45850 5.55829 5.62989 5.70561 5.71318 6.11068 6.27550 6.32168 6.37015 6.93953 7.21351 8.60957 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.003313 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.025479 B = 8449.417803 C = 9848.666384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.240 1.240 7 C -0.526 4.526 8 H 0.061 0.939 9 S -0.179 6.179 10 C -0.102 4.102 11 C 0.530 3.470 12 O -0.568 6.568 13 N -0.583 5.583 14 C 0.105 3.895 15 C -0.135 4.135 16 C 0.060 3.940 17 N -0.552 5.552 18 C 0.070 3.930 19 C -0.077 4.077 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.108 4.108 25 C 0.055 3.945 26 C 0.119 3.881 27 H 0.277 0.723 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.091 0.909 50 H 0.065 0.935 51 H 0.079 0.921 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.295 -21.295 9.404 29.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.164 1.164 7 C -0.673 4.673 8 H 0.080 0.920 9 S 0.047 5.953 10 C -0.252 4.252 11 C 0.317 3.683 12 O -0.448 6.448 13 N -0.315 5.315 14 C -0.018 4.018 15 C -0.174 4.174 16 C -0.067 4.067 17 N -0.276 5.276 18 C -0.058 4.058 19 C -0.096 4.096 20 C -0.135 4.135 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.074 4.074 26 C -0.004 4.004 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.083 0.917 51 H 0.097 0.903 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.120 -19.415 9.455 28.843 hybrid contribution -1.182 -0.634 -0.196 1.355 sum 17.938 -20.049 9.259 28.451 Atomic orbital electron populations 1.70014 1.07213 1.28976 1.49270 1.25528 0.95253 1.02116 0.92915 0.85891 0.80639 0.79753 0.80244 1.18609 1.18203 1.16366 1.22434 0.90139 0.96643 1.58111 0.92040 1.84715 1.06528 1.06510 1.97521 1.23283 0.96478 0.99083 1.06389 1.19997 0.89184 0.83619 0.75463 1.90644 1.59183 1.43782 1.51164 1.47489 1.07356 1.04576 1.72043 1.21851 0.92687 0.89838 0.97436 1.21451 0.98733 1.01414 0.95786 1.21003 0.90809 0.93507 1.01354 1.60668 1.08379 1.55696 1.02846 1.22191 0.95577 0.99125 0.88860 1.21169 0.98900 0.95489 0.94001 1.21321 0.99270 0.96308 0.96588 1.21552 0.98847 1.00101 0.95569 1.21521 0.99862 0.96877 0.97174 1.21500 1.00411 0.95373 0.98005 1.21519 0.98387 1.01332 0.93381 1.22375 0.97936 0.97116 0.89975 1.22117 0.78698 1.00038 0.99509 0.91368 0.87849 0.87456 0.90389 0.87839 0.93703 0.88172 0.90997 0.92939 0.93328 0.91011 0.91474 0.93365 0.93882 0.92681 0.93633 0.91952 0.92213 0.92184 0.90955 0.90818 0.91933 0.89087 0.91690 0.90299 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.58 13.97 21.65 0.30 -56.28 16 2 C 0.05 2.83 5.50 84.86 0.47 3.29 16 3 Si 0.91 46.11 27.74 68.60 1.90 48.02 16 4 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.24 -12.22 6.74 99.48 0.67 -11.55 16 7 C -0.53 -31.36 10.04 67.95 0.68 -30.68 16 8 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 9 S -0.18 -9.47 18.55 -56.49 -1.05 -10.52 16 10 C -0.10 -4.12 4.62 71.24 0.33 -3.79 16 11 C 0.53 19.91 7.65 87.66 0.67 20.58 16 12 O -0.57 -26.03 15.14 -3.03 -0.05 -26.07 16 13 N -0.58 -15.47 2.53 -816.38 -2.06 -17.53 16 14 C 0.11 2.05 5.22 87.38 0.46 2.51 16 15 C -0.13 -2.48 5.95 29.55 0.18 -2.31 16 16 C 0.06 0.93 4.76 84.72 0.40 1.33 16 17 N -0.55 -9.77 3.54 -911.10 -3.23 -13.00 16 18 C 0.07 1.02 4.16 86.30 0.36 1.38 16 19 C -0.08 -1.25 2.10 -10.80 -0.02 -1.27 16 20 C -0.10 -2.18 5.08 30.59 0.16 -2.03 16 21 C -0.12 -2.66 5.92 30.59 0.18 -2.48 16 22 C -0.12 -1.96 5.92 30.59 0.18 -1.78 16 23 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 24 C -0.11 -1.39 5.20 30.59 0.16 -1.23 16 25 C 0.06 0.84 5.53 87.19 0.48 1.32 16 26 C 0.12 2.63 6.49 86.62 0.56 3.19 16 27 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 28 H 0.10 4.02 7.27 -2.39 -0.02 4.00 16 29 H 0.11 4.02 7.30 -2.40 -0.02 4.00 16 30 H 0.08 1.63 6.18 -2.38 -0.01 1.61 16 31 H 0.10 1.40 8.09 -2.39 -0.02 1.38 16 32 H 0.04 1.14 7.42 -2.38 -0.02 1.12 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.07 5.69 -2.39 -0.01 1.06 16 35 H 0.05 0.62 7.17 -2.38 -0.02 0.60 16 36 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 37 H 0.07 1.10 7.78 -2.39 -0.02 1.08 16 38 H 0.07 1.15 6.18 -2.38 -0.01 1.13 16 39 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.04 1.25 7.70 -2.38 -0.02 1.24 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 49 H 0.09 1.16 7.42 -2.39 -0.02 1.14 16 50 H 0.07 0.73 7.13 -2.39 -0.02 0.72 16 51 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.06 1.78 6.96 -2.38 -0.02 1.76 16 Total: -1.00 -74.41 398.81 2.08 -72.33 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.84 Total: 16.37 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 5.42 Total: -13.33 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -4.99 Total: -86.81 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.02 kcal Atomic # 16 Polarization: -9.47 SS G_CDS: -1.05 Total: -10.52 kcal Total: -74.41 2.08 -72.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363392667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.006 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds