Wall clock time and date at job start Sat Apr 11 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 C 1.50702 * 109.46743 * 240.00604 * 2 1 3 5 5 H 1.08002 * 119.99441 * 239.99284 * 4 2 1 6 6 C 1.37875 * 120.00641 * 60.00188 * 4 2 1 7 7 N 1.31514 * 119.99481 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00577 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47293 * 59.99047 * 8 6 4 10 10 H 1.48497 * 109.47533 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46772 * 299.99795 * 8 6 4 12 12 C 1.52999 * 109.47258 * 120.00260 * 2 1 3 13 13 N 1.46497 * 109.46992 * 300.00045 * 12 2 1 14 14 C 1.34777 * 119.99525 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 12 17 17 C 1.53118 * 109.52322 * 300.14906 * 16 14 13 18 18 C 1.53041 * 109.27681 * 182.50446 * 17 16 14 19 19 N 1.46851 * 109.57641 * 59.08705 * 18 17 16 20 20 C 1.46902 * 111.00121 * 174.19558 * 19 18 17 21 21 H 1.08993 * 108.82616 * 180.67697 * 20 19 18 22 22 C 1.52330 * 108.86661 * 299.20567 * 20 19 18 23 23 C 1.54259 * 112.58920 * 120.82026 * 22 20 19 24 24 S 1.83961 * 102.57928 * 24.52837 * 23 22 20 25 25 C 1.54250 * 108.87090 * 62.28501 * 20 19 18 26 26 C 1.46850 * 111.19496 * 298.28982 * 19 18 17 27 27 C 1.53043 * 109.52342 * 61.74050 * 26 19 18 28 28 H 1.08998 * 109.46912 * 299.99187 * 1 2 3 29 29 H 1.08994 * 109.47328 * 60.00002 * 1 2 3 30 30 H 1.09007 * 109.46697 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47465 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47749 * 300.00235 * 3 2 1 33 33 H 1.09003 * 109.46864 * 60.00231 * 3 2 1 34 34 H 0.97000 * 120.00289 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.46838 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46617 * 60.00267 * 12 2 1 37 37 H 0.97000 * 120.00580 * 0.02562 * 13 12 2 38 38 H 1.08995 * 109.52341 * 60.27771 * 16 14 13 39 39 H 1.08999 * 109.50603 * 302.38554 * 17 16 14 40 40 H 1.09004 * 109.50196 * 62.50202 * 17 16 14 41 41 H 1.09006 * 109.41108 * 299.06924 * 18 17 16 42 42 H 1.09000 * 109.46797 * 179.13469 * 18 17 16 43 43 H 1.09001 * 108.87134 * 241.64069 * 22 20 19 44 44 H 1.09008 * 108.86763 * 0.14991 * 22 20 19 45 45 H 1.08991 * 110.79204 * 142.80123 * 23 22 20 46 46 H 1.09005 * 110.78834 * 266.06729 * 23 22 20 47 47 H 1.09004 * 110.78981 * 332.92191 * 25 20 19 48 48 H 1.09000 * 110.79142 * 96.37550 * 25 20 19 49 49 H 1.09000 * 109.46510 * 301.72543 * 26 19 18 50 50 H 1.09001 * 109.46188 * 181.75534 * 26 19 18 51 51 H 1.09001 * 109.50157 * 180.87760 * 27 26 19 52 52 H 1.08998 * 109.49924 * 60.76341 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8259 -0.4202 -5.2206 11 1 3.8063 -1.1207 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4916 3.6694 15 8 2.5743 -1.4777 3.7806 16 6 1.3798 0.2223 4.8999 17 6 1.8932 1.6648 4.8971 18 6 1.4374 2.3658 6.1789 19 7 1.9577 1.6432 7.3466 20 6 1.6553 2.3647 8.5900 21 1 2.0664 1.8052 9.4302 22 6 2.3191 3.7347 8.5384 23 6 1.3045 4.8899 8.6634 24 16 -0.0977 4.0972 9.5520 25 6 0.1242 2.4540 8.7553 26 6 1.4391 0.2701 7.3956 27 6 1.8963 -0.4939 6.1508 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 0.7082 1.1612 -3.4843 35 1 3.1300 -0.7217 1.2489 36 1 1.6768 -1.7490 1.2490 37 1 0.9938 0.7577 2.3565 38 1 0.2898 0.2236 4.9048 39 1 2.9823 1.6634 4.8517 40 1 1.4930 2.1919 4.0309 41 1 0.3481 2.3801 6.2163 42 1 1.8143 3.3886 6.1873 43 1 3.0394 3.8084 9.3532 44 1 2.8486 3.8344 7.5907 45 1 1.7208 5.7087 9.2501 46 1 0.9939 5.2403 7.6791 47 1 -0.3720 2.4244 7.7852 48 1 -0.2421 1.6574 9.4028 49 1 0.3498 0.2941 7.4272 50 1 1.8173 -0.2293 8.2876 51 1 1.4983 -1.5083 6.1799 52 1 2.9854 -0.5303 6.1258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594369009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:52 Heat of formation + Delta-G solvation = -45.193477 kcal Electronic energy + Delta-G solvation = -28506.052327 eV Core-core repulsion = 24823.883203 eV Total energy + Delta-G solvation = -3682.169124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40294 -39.02988 -36.52692 -35.62663 -33.35392 -32.36318 -31.03635 -30.76551 -29.25438 -26.52976 -25.75373 -25.56571 -25.01126 -23.70706 -23.41745 -20.98129 -19.91960 -19.41385 -18.79106 -17.45645 -16.91551 -16.61239 -15.85278 -15.66669 -15.12339 -15.08956 -14.94236 -14.78258 -14.62497 -13.90264 -13.80347 -13.62536 -13.25708 -13.14269 -12.90789 -12.61125 -12.54927 -12.35276 -12.21387 -12.18290 -11.94718 -11.49375 -11.40536 -11.31087 -11.21385 -11.12115 -10.87154 -10.81651 -10.74816 -10.60154 -10.40588 -10.30713 -10.21900 -9.65647 -9.51492 -9.18784 -8.81271 -8.73586 -8.46053 -8.31476 -8.07767 -6.03843 -4.13935 1.43947 1.87261 3.04641 3.28775 3.33142 3.36554 3.43753 3.72389 4.05764 4.34941 4.38500 4.41951 4.49781 4.57409 4.63702 4.75664 4.83236 4.96784 5.03612 5.05888 5.20458 5.21190 5.22887 5.27340 5.35919 5.40352 5.47443 5.55478 5.58381 5.68014 5.79001 5.91118 6.06157 6.22490 6.27321 6.31636 6.48756 6.68211 6.73203 6.76794 6.79311 6.91370 6.99445 7.02981 7.33268 7.53245 7.67484 7.98708 8.04975 8.14339 8.36833 8.71081 8.86778 9.51921 10.97541 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.002145 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.090242 B =13047.567611 C =13685.627197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.509 3.491 15 O -0.552 6.552 16 C -0.109 4.109 17 C -0.107 4.107 18 C 0.049 3.951 19 N -0.527 5.527 20 C 0.084 3.916 21 H 0.096 0.904 22 C -0.125 4.125 23 C -0.067 4.067 24 S -0.298 6.298 25 C -0.102 4.102 26 C 0.054 3.946 27 C -0.094 4.094 28 H 0.005 0.995 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.104 0.896 49 H 0.037 0.963 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 7.393 22.614 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.294 3.706 15 O -0.431 6.431 16 C -0.131 4.131 17 C -0.145 4.145 18 C -0.079 4.079 19 N -0.252 5.252 20 C -0.026 4.026 21 H 0.115 0.885 22 C -0.164 4.164 23 C -0.215 4.215 24 S -0.073 6.073 25 C -0.252 4.252 26 C -0.074 4.074 27 C -0.132 4.132 28 H 0.024 0.976 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.124 0.876 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.122 0.878 49 H 0.055 0.945 50 H 0.097 0.903 51 H 0.093 0.907 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.115 7.182 23.286 24.395 hybrid contribution -0.188 -0.459 -1.698 1.769 sum -1.304 6.723 21.589 22.649 Atomic orbital electron populations 1.21833 0.97828 0.99154 1.00033 1.18343 0.92727 0.92747 0.90600 1.21825 0.98578 0.98352 1.00019 1.20950 1.31519 1.12105 0.89916 0.92521 1.24877 0.94855 0.94923 0.98847 1.69789 1.36613 1.22762 1.23344 0.86632 0.79249 0.79800 0.82176 1.20288 1.21323 1.20269 1.21700 0.98105 0.95756 0.83554 1.46330 1.52536 1.31679 1.06086 1.20458 0.80706 0.84682 0.84775 1.90663 1.38536 1.26863 1.86989 1.21386 1.01409 0.96109 0.94172 1.21576 1.02637 0.93405 0.96883 1.22201 0.97594 0.98120 0.89947 1.62329 1.59092 1.02304 1.01435 1.22357 0.90733 0.95707 0.93817 0.88540 1.22077 0.98417 0.90928 1.04949 1.24195 0.94491 1.00240 1.02566 1.88079 1.46795 1.12939 1.59497 1.25001 1.00493 0.96147 1.03568 1.22171 0.97415 0.88448 0.99340 1.21372 1.02783 0.98083 0.90965 0.97574 0.89588 0.95472 0.95447 0.89611 0.97569 0.92946 0.92788 0.92850 0.76826 0.89278 0.90286 0.90626 0.94251 0.90048 0.90001 0.88928 0.87609 0.89217 0.88728 0.87760 0.94518 0.90314 0.90711 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.87 8.08 37.15 0.30 -2.57 16 4 C -0.51 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.41 9.35 55.43 0.52 -22.89 16 8 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.13 2.75 4.50 -4.04 -0.02 2.74 16 13 N -0.72 -12.27 4.86 -60.30 -0.29 -12.56 16 14 C 0.51 8.37 7.16 -10.98 -0.08 8.30 16 15 O -0.55 -11.21 15.98 5.55 0.09 -11.12 16 16 C -0.11 -1.28 2.59 -91.65 -0.24 -1.51 16 17 C -0.11 -1.08 5.26 -26.65 -0.14 -1.22 16 18 C 0.05 0.40 4.76 -3.83 -0.02 0.38 16 19 N -0.53 -4.25 4.54 -226.30 -1.03 -5.27 16 20 C 0.08 0.57 2.68 -67.40 -0.18 0.39 16 21 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 22 C -0.12 -0.76 5.39 -26.41 -0.14 -0.90 16 23 C -0.07 -0.41 7.46 37.82 0.28 -0.13 16 24 S -0.30 -2.55 23.27 -107.50 -2.50 -5.05 16 25 C -0.10 -0.73 5.61 37.81 0.21 -0.52 16 26 C 0.05 0.45 5.08 -3.83 -0.02 0.43 16 27 C -0.09 -1.03 4.68 -26.65 -0.12 -1.16 16 28 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 29 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 34 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.40 6.12 5.63 -40.82 -0.23 5.89 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.74 7.65 -51.93 -0.40 0.34 16 41 H 0.04 0.31 6.18 -51.93 -0.32 -0.01 16 42 H 0.08 0.60 6.13 -51.93 -0.32 0.28 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.59 6.22 -51.92 -0.32 0.27 16 45 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.72 5.64 -51.93 -0.29 0.42 16 48 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.04 0.29 7.21 -51.93 -0.37 -0.09 16 50 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 51 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.08 1.03 8.04 -51.93 -0.42 0.62 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -28.43 394.19 -11.66 -40.09 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -9.05 Total: 4.25 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.31 Total: -8.96 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.80 Total: -40.73 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.50 Total: -5.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.43 -11.66 -40.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594369009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.107 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds