Wall clock time and date at job start Sat Apr 11 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 C 1.50702 * 109.46743 * 240.00604 * 2 1 3 5 5 H 1.08002 * 119.99441 * 239.99284 * 4 2 1 6 6 C 1.37875 * 120.00641 * 60.00188 * 4 2 1 7 7 N 1.31514 * 119.99481 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00577 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47293 * 59.99047 * 8 6 4 10 10 H 1.48497 * 109.47533 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46772 * 299.99795 * 8 6 4 12 12 C 1.52999 * 109.47258 * 120.00260 * 2 1 3 13 13 N 1.46497 * 109.46992 * 300.00045 * 12 2 1 14 14 C 1.34777 * 119.99525 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 12 17 17 C 1.53118 * 109.52322 * 300.14906 * 16 14 13 18 18 C 1.53041 * 109.27681 * 182.50446 * 17 16 14 19 19 N 1.46851 * 109.57641 * 59.08705 * 18 17 16 20 20 C 1.46902 * 111.00121 * 174.19558 * 19 18 17 21 21 H 1.08993 * 108.82616 * 180.67697 * 20 19 18 22 22 C 1.52330 * 108.86661 * 299.20567 * 20 19 18 23 23 C 1.54259 * 112.58920 * 120.82026 * 22 20 19 24 24 S 1.83961 * 102.57928 * 24.52837 * 23 22 20 25 25 C 1.54250 * 108.87090 * 62.28501 * 20 19 18 26 26 C 1.46850 * 111.19496 * 298.28982 * 19 18 17 27 27 C 1.53043 * 109.52342 * 61.74050 * 26 19 18 28 28 H 1.08998 * 109.46912 * 299.99187 * 1 2 3 29 29 H 1.08994 * 109.47328 * 60.00002 * 1 2 3 30 30 H 1.09007 * 109.46697 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47465 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47749 * 300.00235 * 3 2 1 33 33 H 1.09003 * 109.46864 * 60.00231 * 3 2 1 34 34 H 0.97000 * 120.00289 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.46838 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46617 * 60.00267 * 12 2 1 37 37 H 0.97000 * 120.00580 * 0.02562 * 13 12 2 38 38 H 1.08995 * 109.52341 * 60.27771 * 16 14 13 39 39 H 1.08999 * 109.50603 * 302.38554 * 17 16 14 40 40 H 1.09004 * 109.50196 * 62.50202 * 17 16 14 41 41 H 1.09006 * 109.41108 * 299.06924 * 18 17 16 42 42 H 1.09000 * 109.46797 * 179.13469 * 18 17 16 43 43 H 1.09001 * 108.87134 * 241.64069 * 22 20 19 44 44 H 1.09008 * 108.86763 * 0.14991 * 22 20 19 45 45 H 1.08991 * 110.79204 * 142.80123 * 23 22 20 46 46 H 1.09005 * 110.78834 * 266.06729 * 23 22 20 47 47 H 1.09004 * 110.78981 * 332.92191 * 25 20 19 48 48 H 1.09000 * 110.79142 * 96.37550 * 25 20 19 49 49 H 1.09000 * 109.46510 * 301.72543 * 26 19 18 50 50 H 1.09001 * 109.46188 * 181.75534 * 26 19 18 51 51 H 1.09001 * 109.50157 * 180.87760 * 27 26 19 52 52 H 1.08998 * 109.49924 * 60.76341 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8259 -0.4202 -5.2206 11 1 3.8063 -1.1207 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4916 3.6694 15 8 2.5743 -1.4777 3.7806 16 6 1.3798 0.2223 4.8999 17 6 1.8932 1.6648 4.8971 18 6 1.4374 2.3658 6.1789 19 7 1.9577 1.6432 7.3466 20 6 1.6553 2.3647 8.5900 21 1 2.0664 1.8052 9.4302 22 6 2.3191 3.7347 8.5384 23 6 1.3045 4.8899 8.6634 24 16 -0.0977 4.0972 9.5520 25 6 0.1242 2.4540 8.7553 26 6 1.4391 0.2701 7.3956 27 6 1.8963 -0.4939 6.1508 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 0.7082 1.1612 -3.4843 35 1 3.1300 -0.7217 1.2489 36 1 1.6768 -1.7490 1.2490 37 1 0.9938 0.7577 2.3565 38 1 0.2898 0.2236 4.9048 39 1 2.9823 1.6634 4.8517 40 1 1.4930 2.1919 4.0309 41 1 0.3481 2.3801 6.2163 42 1 1.8143 3.3886 6.1873 43 1 3.0394 3.8084 9.3532 44 1 2.8486 3.8344 7.5907 45 1 1.7208 5.7087 9.2501 46 1 0.9939 5.2403 7.6791 47 1 -0.3720 2.4244 7.7852 48 1 -0.2421 1.6574 9.4028 49 1 0.3498 0.2941 7.4272 50 1 1.8173 -0.2293 8.2876 51 1 1.4983 -1.5083 6.1799 52 1 2.9854 -0.5303 6.1258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594369009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:51 Heat of formation + Delta-G solvation = -61.097944 kcal Electronic energy + Delta-G solvation = -28506.741997 eV Core-core repulsion = 24823.883203 eV Total energy + Delta-G solvation = -3682.858793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38010 -40.10375 -38.17119 -36.48308 -35.00990 -33.26096 -32.46499 -31.73682 -29.88203 -27.68728 -27.56122 -27.21514 -26.26784 -24.65478 -24.16047 -21.97442 -20.88715 -20.59021 -20.16285 -18.51144 -17.88215 -17.59445 -17.24188 -16.68276 -16.57093 -16.41483 -15.92522 -15.68653 -15.47027 -15.09741 -14.87656 -14.78159 -14.33742 -14.29116 -14.09289 -13.89116 -13.73059 -13.22403 -13.16994 -13.09598 -12.91266 -12.84821 -12.66868 -12.64639 -12.62933 -12.24976 -12.21247 -12.13395 -12.00621 -11.80717 -11.60612 -11.48285 -11.38211 -11.23289 -10.89390 -10.75312 -10.58562 -10.39695 -9.91197 -9.34059 -8.70702 -8.02637 -6.18229 0.89865 1.35216 1.43343 1.44736 1.51147 1.72171 2.33900 2.50796 2.83385 3.20883 3.52256 3.65498 3.74969 3.82628 3.94336 3.97578 4.11176 4.16929 4.26042 4.29137 4.42297 4.46897 4.47955 4.51000 4.52082 4.61925 4.70763 4.75455 4.79145 4.85976 4.86979 4.93354 4.98909 5.05302 5.07735 5.11761 5.12457 5.19207 5.21975 5.24184 5.36232 5.40894 5.61646 5.66885 5.67552 6.07559 6.10763 6.15749 6.21988 6.43669 6.70732 6.85781 7.36223 7.49394 8.95962 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.002145 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.090242 B =13047.567611 C =13685.627197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.709 5.709 14 C 0.506 3.494 15 O -0.594 6.594 16 C -0.099 4.099 17 C -0.103 4.103 18 C 0.053 3.947 19 N -0.535 5.535 20 C 0.088 3.912 21 H 0.100 0.900 22 C -0.122 4.122 23 C -0.054 4.054 24 S -0.350 6.350 25 C -0.089 4.089 26 C 0.061 3.939 27 C -0.091 4.091 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.408 0.592 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.049 0.951 50 H 0.089 0.911 51 H 0.066 0.934 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 8.610 23.957 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.024 3.976 13 N -0.361 5.361 14 C 0.294 3.706 15 O -0.475 6.475 16 C -0.120 4.120 17 C -0.141 4.141 18 C -0.074 4.074 19 N -0.259 5.259 20 C -0.021 4.021 21 H 0.118 0.882 22 C -0.161 4.161 23 C -0.201 4.201 24 S -0.125 6.125 25 C -0.239 4.239 26 C -0.067 4.067 27 C -0.129 4.129 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.245 0.755 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.134 0.866 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.127 0.873 49 H 0.067 0.933 50 H 0.107 0.893 51 H 0.085 0.915 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.709 8.426 24.642 26.099 hybrid contribution 0.025 -0.859 -2.102 2.271 sum -1.684 7.567 22.540 23.836 Atomic orbital electron populations 1.21676 0.97134 0.98607 1.00453 1.18339 0.93206 0.93074 0.90221 1.21662 0.97865 0.97765 1.00468 1.21251 1.31748 1.12164 0.91684 0.93926 1.25434 0.95160 0.95604 1.00901 1.69891 1.36894 1.23246 1.23671 0.85848 0.78629 0.78824 0.79690 1.20346 1.20754 1.20300 1.21231 0.96834 0.94994 0.84583 1.46158 1.52711 1.31838 1.05345 1.21341 0.79552 0.84089 0.85600 1.90646 1.40366 1.28888 1.87567 1.21406 1.02502 0.96540 0.91547 1.21559 1.01631 0.92323 0.98585 1.22166 0.98095 0.98333 0.88795 1.62309 1.59373 1.02250 1.01963 1.22365 0.90593 0.96003 0.93189 0.88175 1.22056 0.98330 0.90420 1.05248 1.24248 0.93021 1.00341 1.02538 1.88291 1.48644 1.14935 1.60679 1.24973 1.00579 0.95046 1.03295 1.22089 0.98070 0.88404 0.98093 1.21316 1.01283 0.98223 0.92066 0.94326 0.91863 0.96452 0.96410 0.91903 0.94244 0.93003 0.94651 0.94693 0.75479 0.87046 0.91891 0.89826 0.93353 0.88834 0.89333 0.88856 0.86568 0.88632 0.88796 0.87261 0.93284 0.89289 0.91544 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 4 C -0.53 -27.93 8.01 25.60 0.21 -27.72 16 5 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 6 C 0.03 1.51 5.15 84.65 0.44 1.95 16 7 N -0.90 -47.47 9.35 21.45 0.20 -47.27 16 8 Si 0.94 42.44 29.54 68.60 2.03 44.47 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.15 6.23 4.50 86.38 0.39 6.62 16 13 N -0.71 -23.52 4.86 -463.07 -2.25 -25.77 16 14 C 0.51 16.30 7.16 87.66 0.63 16.93 16 15 O -0.59 -24.41 15.98 -3.04 -0.05 -24.46 16 16 C -0.10 -2.12 2.59 -11.46 -0.03 -2.15 16 17 C -0.10 -1.83 5.26 30.65 0.16 -1.66 16 18 C 0.05 0.70 4.76 86.33 0.41 1.11 16 19 N -0.53 -7.16 4.54 -869.89 -3.95 -11.11 16 20 C 0.09 0.96 2.68 45.12 0.12 1.09 16 21 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 22 C -0.12 -1.14 5.39 30.80 0.17 -0.98 16 23 C -0.05 -0.53 7.46 72.41 0.54 0.01 16 24 S -0.35 -5.38 23.27 -56.49 -1.31 -6.70 16 25 C -0.09 -1.05 5.61 72.41 0.41 -0.64 16 26 C 0.06 0.86 5.08 86.33 0.44 1.30 16 27 C -0.09 -1.87 4.68 30.65 0.14 -1.73 16 28 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 29 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 30 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 33 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 34 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.41 11.57 5.63 -92.71 -0.52 11.05 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.36 7.65 -2.39 -0.02 1.34 16 41 H 0.05 0.58 6.18 -2.38 -0.01 0.57 16 42 H 0.09 1.05 6.13 -2.39 -0.01 1.03 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.09 0.91 6.22 -2.38 -0.01 0.90 16 45 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.09 1.13 5.64 -2.38 -0.01 1.12 16 48 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.05 0.60 7.21 -2.39 -0.02 0.58 16 50 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 51 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -62.23 394.19 0.19 -62.04 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.38 Total: 21.62 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.15 Total: -12.83 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -6.00 Total: -84.15 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -1.31 Total: -6.70 kcal Total: -62.23 0.19 -62.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594369009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.942 kcal (2) G-P(sol) polarization free energy of solvation -62.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds