Wall clock time and date at job start Sat Apr 11 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99965 * 2 1 4 4 O 1.21291 * 119.99896 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00365 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47232 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47136 * 180.02562 * 6 5 3 8 8 C 1.46497 * 119.99835 * 269.99936 * 7 6 5 9 9 C 1.34778 * 120.00111 * 89.99912 * 7 6 5 10 10 O 1.21354 * 119.99893 * 4.76890 * 9 7 6 11 11 C 1.49440 * 120.00015 * 185.04500 * 9 7 6 12 12 O 1.21350 * 120.00350 * 274.78860 * 11 9 7 13 13 N 1.34777 * 119.99956 * 94.78594 * 11 9 7 14 14 C 1.47087 * 120.88162 * 184.85186 * 13 11 9 15 15 C 1.53696 * 108.27413 * 128.75900 * 14 13 11 16 16 N 1.46900 * 109.26026 * 54.08363 * 15 14 13 17 17 C 1.46894 * 110.99854 * 172.60986 * 16 15 14 18 18 C 1.50703 * 109.46938 * 294.29521 * 17 16 15 19 19 H 1.07997 * 120.00361 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00024 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99965 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00020 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46930 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46976 * 120.00203 * 22 20 18 25 25 H 1.48503 * 109.47146 * 240.00049 * 22 20 18 26 26 C 1.46900 * 111.26490 * 296.75678 * 16 15 14 27 27 C 1.47077 * 120.88323 * 5.13312 * 13 11 9 28 28 H 1.09003 * 109.47130 * 60.00490 * 1 2 3 29 29 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47361 * 299.99756 * 1 2 3 31 31 H 0.97000 * 120.00639 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46480 * 60.00041 * 5 3 2 33 33 H 1.08994 * 109.47059 * 300.00495 * 5 3 2 34 34 H 1.08998 * 109.47225 * 59.99633 * 6 5 3 35 35 H 1.09003 * 109.46881 * 300.00036 * 6 5 3 36 36 H 1.08998 * 109.47210 * 264.85544 * 8 7 6 37 37 H 1.08997 * 109.47033 * 24.84932 * 8 7 6 38 38 H 1.08997 * 109.47401 * 144.85472 * 8 7 6 39 39 H 1.08996 * 109.62850 * 248.52627 * 14 13 11 40 40 H 1.09000 * 109.62531 * 9.10747 * 14 13 11 41 41 H 1.09003 * 109.64692 * 294.07757 * 15 14 13 42 42 H 1.09001 * 109.41823 * 173.95187 * 15 14 13 43 43 H 1.09000 * 109.47719 * 54.29954 * 17 16 15 44 44 H 1.09004 * 109.47184 * 174.30142 * 17 16 15 45 45 H 0.96994 * 120.00096 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.49274 * 303.13899 * 26 16 15 47 47 H 1.09003 * 109.48848 * 183.06527 * 26 16 15 48 48 H 1.09002 * 109.62995 * 350.89300 * 27 13 11 49 49 H 1.09004 * 109.63116 * 111.46955 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1558 2.6098 0.0011 7 7 5.6208 2.6099 0.0011 8 6 6.3533 2.6095 1.2697 9 6 6.2947 2.6103 -1.1662 10 8 5.6910 2.6981 -2.2153 11 6 7.7848 2.4966 -1.1687 12 8 8.4694 3.4897 -1.0357 13 7 8.3683 1.2910 -1.3187 14 6 9.8281 1.1412 -1.2186 15 6 10.1292 0.0099 -0.2227 16 7 9.4078 -1.2020 -0.6335 17 6 9.8032 -2.3539 0.1879 18 6 11.2504 -2.6836 -0.0729 19 1 11.8196 -2.0960 -0.7780 20 6 11.8479 -3.7356 0.5886 21 7 11.1547 -4.4515 1.4468 22 14 13.6419 -4.1438 0.2658 23 1 14.1932 -3.1949 -0.7346 24 1 14.4107 -4.0304 1.5312 25 1 13.7481 -5.5303 -0.2554 26 6 7.9538 -0.9976 -0.5883 27 6 7.5629 0.0913 -1.5931 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9501 -0.8400 0.0004 32 1 4.0095 0.6533 -0.8892 33 1 4.0089 0.6537 0.8907 34 1 3.7920 3.1234 0.8910 35 1 3.7927 3.1238 -0.8889 36 1 6.6147 3.6329 1.5387 37 1 5.7274 2.1773 2.0505 38 1 7.2627 2.0180 1.1641 39 1 10.2385 0.8909 -2.1968 40 1 10.2680 2.0722 -0.8611 41 1 9.8060 0.3048 0.7757 42 1 11.2007 -0.1899 -0.2144 43 1 9.6701 -2.1113 1.2422 44 1 9.1830 -3.2129 -0.0683 45 1 11.5749 -5.1917 1.9119 46 1 7.6609 -0.6888 0.4151 47 1 7.4475 -1.9282 -0.8451 48 1 6.5046 0.3279 -1.4834 49 1 7.7597 -0.2580 -2.6067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601449134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:56 Heat of formation + Delta-G solvation = -84.913463 kcal Electronic energy + Delta-G solvation = -30691.222842 eV Core-core repulsion = 26461.038116 eV Total energy + Delta-G solvation = -4230.184726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07819 -40.02322 -38.96741 -37.60506 -36.22740 -34.96657 -34.61437 -32.51392 -32.13061 -31.01906 -28.66791 -27.84286 -27.04708 -25.96047 -25.07369 -23.51514 -22.69219 -21.74431 -20.78533 -20.20519 -18.90064 -17.87416 -17.80607 -16.94341 -16.73532 -16.42689 -16.16033 -16.02232 -15.42302 -14.98956 -14.83876 -14.80062 -14.59399 -14.16948 -14.03057 -13.89245 -13.69956 -13.62070 -13.29247 -12.98281 -12.95337 -12.77479 -12.59867 -12.52841 -12.35494 -12.10141 -11.59869 -11.47092 -11.35104 -11.27832 -10.96825 -10.89691 -10.70021 -10.64826 -10.33973 -9.98724 -9.61327 -9.54202 -9.35946 -9.16074 -8.74288 -8.54771 -7.47548 -6.14711 -4.16621 1.89128 2.00821 2.26662 2.51329 2.82518 3.22322 3.24116 3.32411 3.36510 4.00622 4.31571 4.36060 4.55738 4.58582 4.64068 4.77694 4.87886 5.02121 5.08860 5.11069 5.15084 5.16616 5.23386 5.28307 5.37558 5.40855 5.43860 5.46113 5.61643 5.66028 5.73558 5.84600 5.97000 6.00046 6.03392 6.20223 6.36013 6.51035 6.77550 7.03477 7.08795 7.11910 7.18490 7.55967 7.64755 7.77640 7.81856 7.88669 8.00103 8.36190 8.90886 9.48663 10.96072 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.002701 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.543451 B =10363.276406 C =11942.886531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.737 5.737 3 C 0.519 3.481 4 O -0.539 6.539 5 C -0.160 4.160 6 C 0.130 3.870 7 N -0.603 5.603 8 C 0.073 3.927 9 C 0.520 3.480 10 O -0.510 6.510 11 C 0.514 3.486 12 O -0.520 6.520 13 N -0.589 5.589 14 C 0.113 3.887 15 C 0.052 3.948 16 N -0.536 5.536 17 C 0.195 3.805 18 C -0.511 4.511 19 H 0.065 0.935 20 C 0.057 3.943 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.043 3.957 27 C 0.112 3.888 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.405 0.595 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.027 0.973 42 H 0.101 0.899 43 H -0.008 1.008 44 H 0.032 0.968 45 H 0.262 0.738 46 H 0.028 0.972 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.874 8.099 0.270 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.389 5.389 3 C 0.305 3.695 4 O -0.416 6.416 5 C -0.202 4.202 6 C 0.007 3.993 7 N -0.338 5.338 8 C -0.070 4.070 9 C 0.302 3.698 10 O -0.384 6.384 11 C 0.296 3.704 12 O -0.396 6.396 13 N -0.324 5.324 14 C -0.008 4.008 15 C -0.077 4.077 16 N -0.261 5.261 17 C 0.070 3.930 18 C -0.549 4.549 19 H 0.083 0.917 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.087 4.087 27 C -0.011 4.011 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.238 0.762 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.045 0.955 42 H 0.119 0.881 43 H 0.010 0.990 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.046 0.954 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.127 9.192 -0.585 19.446 hybrid contribution 0.883 -0.844 0.836 1.480 sum -16.244 8.349 0.251 18.265 Atomic orbital electron populations 1.21550 0.79466 1.02356 1.02383 1.45829 1.07964 1.08883 1.76184 1.20506 0.89840 0.83668 0.75444 1.90731 1.70560 1.31205 1.49124 1.22051 0.92154 1.00495 1.05454 1.21248 0.77532 0.95035 1.05481 1.47855 1.06929 1.72795 1.06236 1.21952 0.97285 1.03042 0.84672 1.20408 0.88355 0.76707 0.84315 1.90808 1.68585 1.48094 1.30910 1.20096 0.88230 0.84169 0.77905 1.90790 1.63342 1.35783 1.49667 1.48271 1.09025 1.06638 1.68432 1.22130 0.77620 0.99763 1.01311 1.22444 1.01510 0.89164 0.94561 1.62082 1.02112 1.05066 1.56825 1.19727 0.96859 0.86554 0.89830 1.21169 0.95316 1.14485 1.23942 0.91681 1.24985 0.98383 0.96082 0.95053 1.69953 1.36511 1.19910 1.27314 0.86442 0.84608 0.78345 0.78044 1.19582 1.21089 1.20977 1.22385 0.92119 0.97779 0.96406 1.22000 0.93745 0.84403 1.00977 0.92153 0.90544 0.92180 0.76153 0.88139 0.88151 0.88983 0.88475 0.91420 0.89880 0.90869 0.90183 0.89028 0.95513 0.88057 0.99030 0.94991 0.92881 0.95412 0.89746 0.90815 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.70 59.85 0.64 1.13 16 2 N -0.74 -4.72 5.71 -67.07 -0.38 -5.10 16 3 C 0.52 4.72 7.83 -10.98 -0.09 4.64 16 4 O -0.54 -6.97 15.98 5.55 0.09 -6.88 16 5 C -0.16 -1.21 6.02 -27.88 -0.17 -1.38 16 6 C 0.13 1.24 4.71 -4.04 -0.02 1.22 16 7 N -0.60 -6.44 2.87 -182.09 -0.52 -6.96 16 8 C 0.07 0.63 10.23 59.85 0.61 1.24 16 9 C 0.52 7.28 5.49 -11.59 -0.06 7.22 16 10 O -0.51 -8.37 16.65 5.49 0.09 -8.28 16 11 C 0.51 7.85 5.70 -11.59 -0.07 7.79 16 12 O -0.52 -9.25 16.57 5.50 0.09 -9.15 16 13 N -0.59 -8.50 3.00 -172.69 -0.52 -9.02 16 14 C 0.11 1.69 6.61 -3.36 -0.02 1.67 16 15 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 16 N -0.54 -10.08 4.62 -235.47 -1.09 -11.17 16 17 C 0.19 4.58 4.72 -4.98 -0.02 4.56 16 18 C -0.51 -13.25 8.41 -34.44 -0.29 -13.54 16 19 H 0.07 1.67 7.13 -52.49 -0.37 1.30 16 20 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 21 N -0.90 -25.19 13.29 55.43 0.74 -24.45 16 22 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 27 C 0.11 1.45 6.52 -3.61 -0.02 1.43 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.40 1.53 8.83 -40.82 -0.36 1.17 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.10 1.15 7.32 -51.93 -0.38 0.77 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.50 8.03 -51.93 -0.42 0.08 16 38 H 0.07 0.73 6.99 -51.93 -0.36 0.37 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.33 7.10 -51.93 -0.37 0.97 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 1.88 6.67 -51.93 -0.35 1.53 16 43 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 44 H 0.03 0.80 7.97 -51.93 -0.41 0.39 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 1.19 7.99 -51.93 -0.41 0.78 16 48 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 49 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 403.33 15.07 6.08 6.08 Total: -1.00 -34.33 403.33 -8.06 -42.39 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.97 Total: -1.87 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 0.35 Total: 18.87 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -1.78 Total: -56.70 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.27 Total: -24.31 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.33 -8.06 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601449134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.521 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds