Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00249 * 2 1 4 4 C 1.52998 * 109.47257 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47404 * 64.99782 * 4 3 2 6 6 C 1.46218 * 124.85643 * 269.72794 * 5 4 3 7 7 N 1.46798 * 108.05939 * 179.82874 * 6 5 4 8 8 C 1.34777 * 127.03399 * 180.15700 * 7 6 5 9 9 O 1.21587 * 119.99720 * 0.27442 * 8 7 6 10 10 N 1.34777 * 119.99794 * 180.28567 * 8 7 6 11 11 C 1.46502 * 119.99426 * 179.97438 * 10 8 7 12 12 C 1.53040 * 109.45933 * 275.06239 * 11 10 8 13 13 C 1.53191 * 109.31478 * 178.61813 * 12 11 10 14 14 N 1.46927 * 108.77226 * 54.63464 * 13 12 11 15 15 C 1.36945 * 120.62829 * 126.41895 * 14 13 12 16 16 H 1.07994 * 119.99713 * 332.59852 * 15 14 13 17 17 C 1.38813 * 119.99939 * 152.60750 * 15 14 13 18 18 N 1.31619 * 119.99785 * 159.34299 * 17 15 14 19 19 Si 1.86801 * 119.99952 * 339.34008 * 17 15 14 20 20 H 1.48493 * 109.47093 * 92.94564 * 19 17 15 21 21 H 1.48496 * 109.46754 * 212.94506 * 19 17 15 22 22 H 1.48499 * 109.47005 * 332.94485 * 19 17 15 23 23 C 1.46919 * 118.74156 * 306.39084 * 14 13 12 24 24 C 1.53043 * 109.45558 * 154.99723 * 11 10 8 25 25 C 1.46986 * 105.93587 * 0.40875 * 7 6 5 26 26 C 1.34303 * 124.84973 * 90.02104 * 5 4 3 27 27 O 1.21277 * 125.42948 * 359.97438 * 26 5 4 28 28 H 1.09003 * 109.47306 * 60.00168 * 1 2 3 29 29 H 1.09001 * 109.47665 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47508 * 300.00341 * 1 2 3 31 31 H 1.08998 * 109.47450 * 59.99948 * 3 2 1 32 32 H 1.09004 * 109.46993 * 299.99531 * 3 2 1 33 33 H 1.09004 * 109.47502 * 184.99988 * 4 3 2 34 34 H 1.09005 * 109.47340 * 304.99914 * 4 3 2 35 35 H 1.09003 * 109.74947 * 299.65179 * 6 5 4 36 36 H 1.09004 * 109.75596 * 60.33527 * 6 5 4 37 37 H 0.96997 * 120.00268 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.46402 * 35.02155 * 11 10 8 39 39 H 1.09010 * 109.49760 * 298.57051 * 12 11 10 40 40 H 1.09004 * 109.49979 * 58.66134 * 12 11 10 41 41 H 1.08998 * 109.58813 * 294.85062 * 13 12 11 42 42 H 1.09000 * 109.70439 * 174.48973 * 13 12 11 43 43 H 0.97001 * 119.99792 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.58786 * 293.82380 * 23 14 13 45 45 H 1.08999 * 109.70616 * 173.46524 * 23 14 13 46 46 H 1.08999 * 109.49977 * 301.32921 * 24 11 10 47 47 H 1.08998 * 109.50168 * 61.40020 * 24 11 10 48 48 H 1.08995 * 110.03939 * 240.47174 * 25 7 6 49 49 H 1.08996 * 110.08273 * 119.03723 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1466 -0.8733 -1.4583 7 7 4.5933 -1.0854 -2.8404 8 6 4.8630 -2.2648 -3.4344 9 8 4.7374 -3.3017 -2.8119 10 7 5.2721 -2.2948 -4.7182 11 6 5.5658 -3.5768 -5.3635 12 6 7.0053 -3.9890 -5.0470 13 6 7.2978 -5.3461 -5.6946 14 7 6.9966 -5.2598 -7.1301 15 6 7.9351 -5.6137 -8.0624 16 1 8.9862 -5.5323 -7.8283 17 6 7.5354 -6.0770 -9.3084 18 7 8.3695 -6.0327 -10.3256 19 14 5.8137 -6.7632 -9.5414 20 1 4.9067 -5.6798 -9.9984 21 1 5.8453 -7.8443 -10.5589 22 1 5.3205 -7.3109 -8.2523 23 6 5.6692 -4.7871 -7.5462 24 6 5.3949 -3.4362 -6.8779 25 6 4.6922 0.2519 -3.4423 26 6 4.2854 1.2352 -2.3742 27 8 4.2439 2.4400 -2.5068 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.9786 2.1764 0.0889 34 1 3.8515 0.5681 0.8410 35 1 4.8933 -1.2584 -0.7639 36 1 3.1969 -1.3838 -1.2982 37 1 5.3721 -1.4676 -5.2148 38 1 4.8801 -4.3371 -4.9897 39 1 7.6931 -3.2414 -5.4423 40 1 7.1326 -4.0661 -3.9672 41 1 6.6729 -6.1123 -5.2356 42 1 8.3486 -5.6004 -5.5564 43 1 8.0900 -6.3561 -11.1963 44 1 4.9116 -5.5077 -7.2382 45 1 5.6436 -4.6705 -8.6297 46 1 4.3760 -3.1200 -7.1012 47 1 6.0975 -2.6935 -7.2559 48 1 4.0188 0.3280 -4.2960 49 1 5.7175 0.4456 -3.7573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619757228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = -52.754208 kcal Electronic energy + Delta-G solvation = -30360.717952 eV Core-core repulsion = 26131.927756 eV Total energy + Delta-G solvation = -4228.790196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37677 -39.75729 -38.34061 -37.87066 -36.82280 -34.77176 -34.52354 -32.18701 -30.84971 -30.42583 -29.77950 -28.85138 -26.98664 -25.76262 -24.49428 -23.54085 -22.91991 -21.89818 -20.47137 -20.40436 -19.71131 -18.48288 -17.35733 -17.05849 -16.93981 -16.64590 -16.34488 -15.92928 -15.87069 -15.49082 -15.21655 -14.84906 -14.53038 -14.21674 -14.16098 -13.86834 -13.76336 -13.46351 -13.31924 -13.01905 -12.89020 -12.83793 -12.64411 -12.44841 -12.39266 -11.99268 -11.79384 -11.71677 -11.03270 -10.83315 -10.65286 -10.56859 -10.31272 -10.28876 -10.18252 -10.07788 -9.78491 -9.68778 -9.47649 -9.03928 -8.69400 -8.64046 -6.99879 -5.95373 -3.31289 1.90814 1.97675 2.53740 3.04878 3.24413 3.30824 3.48975 3.52139 3.70698 3.77937 4.39684 4.45598 4.52374 4.65893 4.75758 4.83541 4.88875 4.91251 4.94624 4.97595 5.00100 5.09856 5.17438 5.19816 5.26319 5.32633 5.38521 5.39295 5.65168 5.77228 5.81346 6.02879 6.06552 6.15006 6.29593 6.39591 6.48575 6.56817 6.62459 6.63013 6.64623 6.70005 6.77533 6.96056 7.53321 7.77785 7.95556 8.32577 8.43684 8.93329 9.71343 10.08736 11.20548 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.002212 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.482985 B =12655.086870 C =12971.793004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.040 3.960 4 C 0.137 3.863 5 N -0.619 5.619 6 C 0.358 3.642 7 N -0.648 5.648 8 C 0.737 3.263 9 O -0.574 6.574 10 N -0.732 5.732 11 C 0.168 3.832 12 C -0.142 4.142 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.259 4.259 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.269 1.269 23 C 0.130 3.870 24 C -0.140 4.140 25 C 0.068 3.932 26 C 0.522 3.478 27 O -0.517 6.517 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.394 0.606 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.066 0.934 43 H 0.262 0.738 44 H 0.028 0.972 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.106 0.894 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.555 16.526 21.286 30.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.037 4.037 4 C 0.015 3.985 5 N -0.354 5.354 6 C 0.149 3.851 7 N -0.391 5.391 8 C 0.439 3.561 9 O -0.450 6.450 10 N -0.385 5.385 11 C 0.065 3.935 12 C -0.182 4.182 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.387 4.387 16 H 0.104 0.896 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.194 1.194 23 C 0.003 3.997 24 C -0.180 4.180 25 C -0.059 4.059 26 C 0.309 3.691 27 O -0.393 6.393 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.228 0.772 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.124 0.876 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.500 16.065 21.521 30.058 hybrid contribution -1.191 0.366 -0.530 1.354 sum -14.692 16.431 20.991 30.437 Atomic orbital electron populations 1.22747 0.80639 1.03048 0.99936 1.87892 1.20064 1.27303 1.95438 1.23054 0.93908 0.85559 1.01225 1.21478 0.92422 0.99876 0.84690 1.48323 1.66628 1.07591 1.12902 1.21068 1.01060 0.80035 0.82917 1.47228 1.73730 1.04762 1.13404 1.15103 0.77987 0.81036 0.81990 1.90974 1.59821 1.30078 1.64164 1.45485 1.71507 1.10935 1.10598 1.20948 0.97299 0.83154 0.92136 1.22412 0.95570 1.00180 1.00076 1.20900 0.99598 0.92950 0.84123 1.44415 1.11956 1.75273 1.01358 1.18928 0.88937 1.37938 0.92898 0.89629 1.25293 0.97249 0.99185 0.95948 1.69837 1.36236 1.48800 1.00242 0.86971 0.85614 0.78803 0.77417 1.21641 1.23141 1.19438 1.21305 0.87768 0.91687 0.98913 1.22367 1.00918 1.01337 0.93416 1.21878 1.04608 0.82427 0.96997 1.20493 0.76447 0.88387 0.83820 1.90791 1.53801 1.12820 1.81843 0.94103 0.89383 0.94001 0.91729 0.92674 0.87683 0.88636 0.90325 0.89330 0.77238 0.89677 0.91848 0.92123 0.95617 0.91550 0.92776 0.95402 0.90466 0.92187 0.91087 0.87585 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.02 10.06 -35.23 -0.35 -3.38 16 3 C 0.04 0.24 6.28 37.16 0.23 0.48 16 4 C 0.14 0.80 6.37 -4.04 -0.03 0.77 16 5 N -0.62 -5.09 2.88 -177.57 -0.51 -5.60 16 6 C 0.36 3.30 7.51 -63.73 -0.48 2.82 16 7 N -0.65 -6.77 3.36 -184.00 -0.62 -7.39 16 8 C 0.74 10.03 8.50 -86.92 -0.74 9.29 16 9 O -0.57 -9.98 16.40 5.29 0.09 -9.90 16 10 N -0.73 -9.27 5.05 -58.63 -0.30 -9.57 16 11 C 0.17 2.62 2.42 -67.89 -0.16 2.46 16 12 C -0.14 -2.37 5.65 -26.61 -0.15 -2.52 16 13 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 14 N -0.61 -14.10 2.77 -172.32 -0.48 -14.58 16 15 C -0.26 -7.12 10.04 -15.06 -0.15 -7.27 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 17 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 18 N -0.91 -27.55 13.97 55.49 0.78 -26.78 16 19 Si 0.88 22.08 24.35 -169.99 -4.14 17.94 16 20 H -0.29 -6.90 6.62 56.52 0.37 -6.53 16 21 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.27 -6.66 6.63 56.52 0.37 -6.28 16 23 C 0.13 2.72 4.20 -3.71 -0.02 2.71 16 24 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 25 C 0.07 0.56 6.36 -4.89 -0.03 0.53 16 26 C 0.52 5.08 8.13 -11.16 -0.09 4.99 16 27 O -0.52 -6.49 17.67 5.56 0.10 -6.39 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.11 0.54 7.98 -51.93 -0.41 0.13 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.89 7.61 -51.93 -0.40 0.50 16 37 H 0.39 3.99 7.69 -40.82 -0.31 3.68 16 38 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 39 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 45 H 0.08 1.77 4.50 -51.93 -0.23 1.54 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -34.82 391.32 -8.36 -43.18 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.06 Total: -0.04 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: -0.76 Total: 16.61 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -1.13 Total: -63.92 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.17 Total: -19.67 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.82 -8.36 -43.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619757228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.578 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds