Wall clock time and date at job start Sat Apr 11 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00249 * 2 1 4 4 C 1.52998 * 109.47257 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47404 * 64.99782 * 4 3 2 6 6 C 1.46218 * 124.85643 * 269.72794 * 5 4 3 7 7 N 1.46798 * 108.05939 * 179.82874 * 6 5 4 8 8 C 1.34777 * 127.03399 * 180.15700 * 7 6 5 9 9 O 1.21587 * 119.99720 * 0.27442 * 8 7 6 10 10 N 1.34777 * 119.99794 * 180.28567 * 8 7 6 11 11 C 1.46502 * 119.99426 * 179.97438 * 10 8 7 12 12 C 1.53040 * 109.45933 * 275.06239 * 11 10 8 13 13 C 1.53191 * 109.31478 * 178.61813 * 12 11 10 14 14 N 1.46927 * 108.77226 * 54.63464 * 13 12 11 15 15 C 1.36945 * 120.62829 * 126.41895 * 14 13 12 16 16 H 1.07994 * 119.99713 * 332.59852 * 15 14 13 17 17 C 1.38813 * 119.99939 * 152.60750 * 15 14 13 18 18 N 1.31619 * 119.99785 * 159.34299 * 17 15 14 19 19 Si 1.86801 * 119.99952 * 339.34008 * 17 15 14 20 20 H 1.48493 * 109.47093 * 92.94564 * 19 17 15 21 21 H 1.48496 * 109.46754 * 212.94506 * 19 17 15 22 22 H 1.48499 * 109.47005 * 332.94485 * 19 17 15 23 23 C 1.46919 * 118.74156 * 306.39084 * 14 13 12 24 24 C 1.53043 * 109.45558 * 154.99723 * 11 10 8 25 25 C 1.46986 * 105.93587 * 0.40875 * 7 6 5 26 26 C 1.34303 * 124.84973 * 90.02104 * 5 4 3 27 27 O 1.21277 * 125.42948 * 359.97438 * 26 5 4 28 28 H 1.09003 * 109.47306 * 60.00168 * 1 2 3 29 29 H 1.09001 * 109.47665 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47508 * 300.00341 * 1 2 3 31 31 H 1.08998 * 109.47450 * 59.99948 * 3 2 1 32 32 H 1.09004 * 109.46993 * 299.99531 * 3 2 1 33 33 H 1.09004 * 109.47502 * 184.99988 * 4 3 2 34 34 H 1.09005 * 109.47340 * 304.99914 * 4 3 2 35 35 H 1.09003 * 109.74947 * 299.65179 * 6 5 4 36 36 H 1.09004 * 109.75596 * 60.33527 * 6 5 4 37 37 H 0.96997 * 120.00268 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.46402 * 35.02155 * 11 10 8 39 39 H 1.09010 * 109.49760 * 298.57051 * 12 11 10 40 40 H 1.09004 * 109.49979 * 58.66134 * 12 11 10 41 41 H 1.08998 * 109.58813 * 294.85062 * 13 12 11 42 42 H 1.09000 * 109.70439 * 174.48973 * 13 12 11 43 43 H 0.97001 * 119.99792 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.58786 * 293.82380 * 23 14 13 45 45 H 1.08999 * 109.70616 * 173.46524 * 23 14 13 46 46 H 1.08999 * 109.49977 * 301.32921 * 24 11 10 47 47 H 1.08998 * 109.50168 * 61.40020 * 24 11 10 48 48 H 1.08995 * 110.03939 * 240.47174 * 25 7 6 49 49 H 1.08996 * 110.08273 * 119.03723 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1466 -0.8733 -1.4583 7 7 4.5933 -1.0854 -2.8404 8 6 4.8630 -2.2648 -3.4344 9 8 4.7374 -3.3017 -2.8119 10 7 5.2721 -2.2948 -4.7182 11 6 5.5658 -3.5768 -5.3635 12 6 7.0053 -3.9890 -5.0470 13 6 7.2978 -5.3461 -5.6946 14 7 6.9966 -5.2598 -7.1301 15 6 7.9351 -5.6137 -8.0624 16 1 8.9862 -5.5323 -7.8283 17 6 7.5354 -6.0770 -9.3084 18 7 8.3695 -6.0327 -10.3256 19 14 5.8137 -6.7632 -9.5414 20 1 4.9067 -5.6798 -9.9984 21 1 5.8453 -7.8443 -10.5589 22 1 5.3205 -7.3109 -8.2523 23 6 5.6692 -4.7871 -7.5462 24 6 5.3949 -3.4362 -6.8779 25 6 4.6922 0.2519 -3.4423 26 6 4.2854 1.2352 -2.3742 27 8 4.2439 2.4400 -2.5068 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.9786 2.1764 0.0889 34 1 3.8515 0.5681 0.8410 35 1 4.8933 -1.2584 -0.7639 36 1 3.1969 -1.3838 -1.2982 37 1 5.3721 -1.4676 -5.2148 38 1 4.8801 -4.3371 -4.9897 39 1 7.6931 -3.2414 -5.4423 40 1 7.1326 -4.0661 -3.9672 41 1 6.6729 -6.1123 -5.2356 42 1 8.3486 -5.6004 -5.5564 43 1 8.0900 -6.3561 -11.1963 44 1 4.9116 -5.5077 -7.2382 45 1 5.6436 -4.6705 -8.6297 46 1 4.3760 -3.1200 -7.1012 47 1 6.0975 -2.6935 -7.2559 48 1 4.0188 0.3280 -4.2960 49 1 5.7175 0.4456 -3.7573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619757228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:05 Heat of formation + Delta-G solvation = -78.465895 kcal Electronic energy + Delta-G solvation = -30361.832894 eV Core-core repulsion = 26131.927756 eV Total energy + Delta-G solvation = -4229.905139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18602 -40.80233 -39.27632 -38.85343 -37.75554 -36.07250 -35.43118 -33.99014 -32.02687 -31.91793 -30.90642 -29.57119 -27.59323 -26.92998 -25.82440 -24.45725 -24.08815 -23.45534 -21.51188 -21.27413 -21.02601 -19.55248 -18.66917 -18.05641 -17.60106 -17.55342 -17.46984 -16.99025 -16.60802 -16.46490 -16.21900 -15.92234 -15.72071 -15.50542 -15.33434 -15.23932 -14.85090 -14.59966 -14.44381 -14.23456 -13.97100 -13.91615 -13.71595 -13.45209 -13.43138 -13.16375 -12.91181 -12.56605 -12.52934 -12.25693 -12.16851 -12.00159 -11.78818 -11.62537 -11.54192 -11.31263 -11.18416 -10.69565 -10.68439 -10.49923 -10.10225 -9.55606 -8.94148 -8.13776 -5.45973 1.05719 1.24376 1.31787 1.45430 1.54013 1.82282 1.99847 2.43882 2.73843 2.80355 3.06599 3.08408 3.35957 3.78259 3.84528 3.96271 4.00928 4.16166 4.23188 4.25609 4.28555 4.33445 4.35720 4.40463 4.48734 4.51193 4.52843 4.54370 4.59566 4.66440 4.73464 4.74988 4.85545 4.88969 4.95535 5.06307 5.11020 5.14543 5.20386 5.42863 5.51231 5.80001 5.87434 5.89540 6.15370 6.15721 6.78012 6.84053 6.93437 7.41303 7.64074 8.04227 9.05968 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.002212 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.482985 B =12655.086870 C =12971.793004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.409 6.409 3 C 0.042 3.958 4 C 0.131 3.869 5 N -0.613 5.613 6 C 0.360 3.640 7 N -0.644 5.644 8 C 0.739 3.261 9 O -0.614 6.614 10 N -0.720 5.720 11 C 0.179 3.821 12 C -0.128 4.128 13 C 0.147 3.853 14 N -0.619 5.619 15 C -0.246 4.246 16 H 0.053 0.947 17 C -0.035 4.035 18 N -0.957 5.957 19 Si 0.944 3.056 20 H -0.268 1.268 21 H -0.314 1.314 22 H -0.263 1.263 23 C 0.121 3.879 24 C -0.127 4.127 25 C 0.068 3.932 26 C 0.521 3.479 27 O -0.549 6.549 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.410 0.590 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.058 0.942 43 H 0.261 0.739 44 H 0.033 0.967 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.124 0.876 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.488 17.994 22.834 32.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.329 6.329 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.347 5.347 6 C 0.152 3.848 7 N -0.385 5.385 8 C 0.441 3.559 9 O -0.493 6.493 10 N -0.374 5.374 11 C 0.074 3.926 12 C -0.169 4.169 13 C 0.021 3.979 14 N -0.344 5.344 15 C -0.376 4.376 16 H 0.070 0.930 17 C -0.230 4.230 18 N -0.603 5.603 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.243 1.243 22 H -0.188 1.188 23 C -0.004 4.004 24 C -0.167 4.167 25 C -0.058 4.058 26 C 0.308 3.692 27 O -0.427 6.427 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.246 0.754 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.141 0.859 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.475 17.598 23.127 32.924 hybrid contribution -0.557 -0.048 -0.878 1.041 sum -16.031 17.550 22.248 32.557 Atomic orbital electron populations 1.22846 0.79798 1.03464 1.00617 1.87856 1.21134 1.28289 1.95576 1.23086 0.93810 0.85052 1.01615 1.21738 0.92489 1.00532 0.84202 1.48423 1.65879 1.07021 1.13388 1.21059 1.00862 0.80487 0.82433 1.47039 1.72738 1.04767 1.13947 1.15064 0.77749 0.81187 0.81881 1.90955 1.61453 1.31813 1.65073 1.45100 1.71262 1.10579 1.10479 1.20601 0.96014 0.84174 0.91774 1.22224 0.96538 0.98132 0.99960 1.21017 0.99329 0.95054 0.82470 1.44525 1.12128 1.75744 1.02007 1.18854 0.88616 1.36553 0.93568 0.92964 1.25899 1.01164 1.00147 0.95787 1.69965 1.38579 1.50948 1.00776 0.85947 0.81546 0.78060 0.77106 1.19477 1.24278 1.18808 1.21377 0.86447 0.94301 0.98320 1.22167 1.02816 0.98411 0.93277 1.22041 1.06134 0.80657 0.96929 1.20636 0.76098 0.88087 0.84364 1.90782 1.55415 1.14057 1.82396 0.94235 0.89179 0.92503 0.89447 0.94124 0.86888 0.86842 0.89645 0.90075 0.75382 0.90878 0.91877 0.91490 0.95131 0.92356 0.92981 0.94885 0.92385 0.89135 0.90806 0.85862 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.41 -5.74 10.06 -148.98 -1.50 -7.24 16 3 C 0.04 0.43 6.28 71.98 0.45 0.88 16 4 C 0.13 1.26 6.37 86.38 0.55 1.81 16 5 N -0.61 -8.88 2.88 -834.37 -2.40 -11.28 16 6 C 0.36 5.94 7.51 170.95 1.28 7.22 16 7 N -0.64 -11.82 3.36 -854.31 -2.87 -14.69 16 8 C 0.74 18.27 8.50 179.05 1.52 19.80 16 9 O -0.61 -20.25 16.40 -3.99 -0.07 -20.32 16 10 N -0.72 -15.97 5.05 -457.68 -2.31 -18.28 16 11 C 0.18 5.11 2.42 45.02 0.11 5.22 16 12 C -0.13 -4.05 5.65 30.67 0.17 -3.87 16 13 C 0.15 5.67 6.52 86.36 0.56 6.24 16 14 N -0.62 -28.41 2.77 -699.10 -1.94 -30.35 16 15 C -0.25 -13.76 10.04 84.03 0.84 -12.92 16 16 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 17 C -0.04 -2.04 5.23 84.86 0.44 -1.59 16 18 N -0.96 -59.52 13.97 21.65 0.30 -59.22 16 19 Si 0.94 45.79 24.35 68.60 1.67 47.46 16 20 H -0.27 -12.01 6.62 99.48 0.66 -11.36 16 21 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 22 H -0.26 -12.36 6.63 99.48 0.66 -11.70 16 23 C 0.12 4.84 4.20 86.37 0.36 5.20 16 24 C -0.13 -3.76 5.55 30.67 0.17 -3.59 16 25 C 0.07 0.94 6.36 85.57 0.54 1.48 16 26 C 0.52 9.09 8.13 87.76 0.71 9.81 16 27 O -0.55 -12.97 17.67 -3.02 -0.05 -13.02 16 28 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.11 0.94 7.98 -2.39 -0.02 0.93 16 34 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.52 7.61 -2.38 -0.02 1.50 16 37 H 0.41 6.71 7.69 -92.71 -0.71 6.00 16 38 H 0.07 2.34 7.58 -2.39 -0.02 2.32 16 39 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 43 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.03 1.30 7.08 -2.39 -0.02 1.28 16 45 H 0.06 2.55 4.50 -2.39 -0.01 2.54 16 46 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -76.29 391.32 -0.04 -76.33 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.14 Total: 13.40 kcal Atomic # 6 Polarization: 28.24 SS G_CDS: 8.98 Total: 37.22 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -9.21 Total: -133.82 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.62 Total: -40.58 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.67 Total: 47.46 kcal Total: -76.29 -0.04 -76.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619757228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.139 kcal (2) G-P(sol) polarization free energy of solvation -76.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds