Wall clock time and date at job start Sat Apr 11 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.33113 * 119.99660 * 2 1 4 4 F 1.35105 * 119.99966 * 173.09437 * 3 2 1 5 5 C 1.47296 * 120.00313 * 352.80984 * 3 2 1 6 6 O 1.21612 * 119.99891 * 329.04115 * 5 3 2 7 7 N 1.34768 * 120.00111 * 149.04133 * 5 3 2 8 8 C 1.46500 * 120.00118 * 4.96354 * 7 5 3 9 9 C 1.50697 * 109.47352 * 86.28580 * 8 7 5 10 10 H 1.08000 * 119.99750 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00262 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00168 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47167 * 89.99604 * 13 11 9 15 15 H 1.48497 * 109.46965 * 209.99719 * 13 11 9 16 16 H 1.48500 * 109.46836 * 329.99654 * 13 11 9 17 17 C 1.46502 * 120.00364 * 184.96440 * 7 5 3 18 18 C 1.52995 * 109.47439 * 89.99524 * 17 7 5 19 19 N 1.46896 * 109.47598 * 180.02562 * 18 17 7 20 20 C 1.47023 * 111.00008 * 293.64007 * 19 18 17 21 21 C 1.53097 * 109.25739 * 177.60633 * 20 19 18 22 22 O 1.43015 * 109.26020 * 56.84757 * 21 20 19 23 23 C 1.43014 * 113.73753 * 301.32771 * 22 21 20 24 24 C 1.47012 * 111.00178 * 170.00217 * 19 18 17 25 25 C 1.50695 * 120.00031 * 179.97438 * 2 1 3 26 26 C 1.53002 * 117.49774 * 8.75660 * 25 2 1 27 27 C 1.52998 * 117.50485 * 300.09586 * 25 2 1 28 28 H 1.09001 * 109.46427 * 86.29490 * 1 2 3 29 29 H 1.08997 * 109.46823 * 206.29005 * 1 2 3 30 30 H 1.08995 * 109.47216 * 326.29383 * 1 2 3 31 31 H 1.09002 * 109.47473 * 206.28705 * 8 7 5 32 32 H 1.09000 * 109.46959 * 326.28706 * 8 7 5 33 33 H 0.97005 * 119.99348 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.47487 * 210.00308 * 17 7 5 35 35 H 1.09008 * 109.46767 * 329.99632 * 17 7 5 36 36 H 1.08997 * 109.47422 * 300.00824 * 18 17 7 37 37 H 1.09008 * 109.47053 * 60.00283 * 18 17 7 38 38 H 1.09001 * 109.50046 * 297.53752 * 20 19 18 39 39 H 1.08996 * 109.50686 * 57.66348 * 20 19 18 40 40 H 1.08999 * 109.50599 * 296.90640 * 21 20 19 41 41 H 1.09003 * 109.53930 * 176.80215 * 21 20 19 42 42 H 1.09003 * 109.50610 * 298.73681 * 23 22 21 43 43 H 1.08993 * 109.54447 * 178.62669 * 23 22 21 44 44 H 1.08997 * 109.50657 * 302.32571 * 24 19 18 45 45 H 1.08997 * 109.50918 * 62.41870 * 24 19 18 46 46 H 1.08996 * 115.54938 * 154.41996 * 25 2 1 47 47 H 1.08997 * 117.49749 * 359.97438 * 26 25 2 48 48 H 1.08999 * 117.49968 * 145.01492 * 26 25 2 49 49 H 1.08997 * 117.50310 * 214.97669 * 27 25 2 50 50 H 1.09002 * 117.49523 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 9 3.5163 1.1571 0.1407 5 6 1.4448 2.4234 -0.1597 6 8 0.4240 2.4607 -0.8196 7 7 1.9101 3.5447 0.4256 8 6 3.1950 3.5248 1.1290 9 6 4.3092 3.7810 0.1472 10 1 4.0828 3.9429 -0.8963 11 6 5.6177 3.8087 0.5811 12 7 5.8933 3.6119 1.8519 13 14 6.9988 4.1256 -0.6361 14 1 7.2573 5.5854 -0.7224 15 1 8.2296 3.4310 -0.1799 16 1 6.6074 3.6122 -1.9734 17 6 1.1310 4.7836 0.3585 18 6 0.1845 4.8565 1.5583 19 7 -0.5971 6.0984 1.4908 20 6 0.2673 7.2751 1.6635 21 6 -0.5760 8.5455 1.5268 22 8 -1.6400 8.5105 2.4819 23 6 -2.5019 7.3778 2.3422 24 6 -1.6781 6.0954 2.4871 25 6 2.2606 -1.3051 0.0006 26 6 1.4522 -2.5876 -0.2055 27 6 2.0246 -2.2567 1.1751 28 1 -0.3632 0.0664 -1.0256 29 1 -0.3633 -0.9214 0.4552 30 1 -0.3633 0.8549 0.5703 31 1 3.2015 4.2992 1.8961 32 1 3.3388 2.5501 1.5954 33 1 6.8138 3.6318 2.1572 34 1 1.8064 5.6389 0.3759 35 1 0.5502 4.7980 -0.5638 36 1 -0.4908 4.0011 1.5410 37 1 0.7653 4.8421 2.4807 38 1 0.7264 7.2474 2.6517 39 1 1.0451 7.2705 0.8999 40 1 -0.9916 8.6000 0.5207 41 1 0.0491 9.4195 1.7103 42 1 -2.9735 7.3984 1.3597 43 1 -3.2697 7.4064 3.1152 44 1 -2.3205 5.2299 2.3246 45 1 -1.2502 6.0483 3.4884 46 1 3.2638 -1.2688 -0.4240 47 1 0.3753 -2.4874 -0.3410 48 1 1.9237 -3.3953 -0.7653 49 1 2.8723 -2.8468 1.5230 50 1 1.3245 -1.9386 1.9477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900456261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:22 Heat of formation + Delta-G solvation = -70.522812 kcal Electronic energy + Delta-G solvation = -31056.841555 eV Core-core repulsion = 26807.360893 eV Total energy + Delta-G solvation = -4249.480662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.01639 -39.71622 -39.16071 -37.76835 -36.22278 -34.89166 -32.73855 -32.49392 -31.27513 -29.96293 -27.38831 -27.14488 -25.92340 -24.09506 -23.96341 -22.94215 -22.32170 -21.84282 -20.37072 -19.37268 -17.91542 -17.09502 -16.60103 -16.55282 -16.29167 -16.16266 -15.63595 -15.23433 -15.09762 -15.00992 -14.64490 -14.51878 -14.13751 -14.06043 -13.75292 -13.40226 -13.32329 -12.86333 -12.71452 -12.39826 -12.31909 -12.21406 -12.01385 -11.87240 -11.50719 -11.44718 -11.37493 -11.30876 -11.20914 -10.93856 -10.77210 -10.71740 -10.64342 -10.42680 -10.36706 -10.10196 -9.83640 -9.68575 -9.21690 -8.51647 -8.40437 -8.23443 -7.79169 -6.14080 -4.19185 1.62790 3.25106 3.32165 3.35788 3.39261 3.52403 3.77498 3.98700 4.02974 4.36410 4.68843 4.81601 4.89896 4.94562 4.96493 4.98262 5.05244 5.08761 5.20848 5.21586 5.22514 5.25554 5.39898 5.49089 5.50599 5.57979 5.61673 5.72138 5.77926 5.82899 5.87582 5.88779 5.91217 5.95785 6.11295 6.12254 6.17339 6.27875 6.35446 6.55198 6.60523 6.87129 6.94269 6.99014 7.06510 7.19234 7.44325 7.78584 8.07143 8.13387 8.66633 8.87017 9.46717 10.93822 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008082 B = 0.004056 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.555291 B = 6901.563024 C = 9735.147859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.098 4.098 3 C 0.031 3.969 4 F -0.104 7.104 5 C 0.545 3.455 6 O -0.549 6.549 7 N -0.583 5.583 8 C 0.231 3.769 9 C -0.527 4.527 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.892 5.892 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.123 3.877 18 C 0.045 3.955 19 N -0.533 5.533 20 C 0.011 3.989 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.018 3.982 25 C -0.116 4.116 26 C -0.173 4.173 27 C -0.167 4.167 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.835 -1.857 1.165 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C 0.009 3.991 4 F -0.082 7.082 5 C 0.332 3.668 6 O -0.430 6.430 7 N -0.312 5.312 8 C 0.112 3.888 9 C -0.565 4.565 10 H 0.077 0.923 11 C -0.135 4.135 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.000 4.000 18 C -0.084 4.084 19 N -0.259 5.259 20 C -0.117 4.117 21 C -0.012 4.012 22 O -0.307 6.307 23 C -0.012 4.012 24 C -0.110 4.110 25 C -0.134 4.134 26 C -0.210 4.210 27 C -0.204 4.204 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.134 0.866 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.363 -1.631 0.663 13.478 hybrid contribution 1.874 -0.100 0.111 1.880 sum -11.488 -1.731 0.774 11.644 Atomic orbital electron populations 1.20674 0.89826 1.01701 1.03225 1.21558 0.96459 0.91555 1.00533 1.19452 0.78967 0.93803 1.06923 1.91668 1.27604 1.96812 1.92119 1.18296 0.84440 0.83967 0.80086 1.90733 1.25559 1.85694 1.41008 1.48230 1.22243 1.08165 1.52574 1.19704 0.77465 0.99229 0.92425 1.21336 0.90845 1.49565 0.94768 0.92309 1.24858 0.98556 0.94815 0.95222 1.69922 1.19797 1.49206 1.14082 0.86539 0.81446 0.78269 0.81497 1.20604 1.21062 1.19772 1.21243 0.93562 0.87066 0.98175 1.22492 0.95963 0.91368 0.98558 1.62137 1.12266 1.02453 1.48994 1.22892 0.96202 0.90765 1.01811 1.22681 0.88581 0.97174 0.92782 1.87960 1.41677 1.44923 1.56185 1.22642 0.92067 0.84480 1.01996 1.22765 0.94632 0.99433 0.94180 1.20960 1.00026 0.88130 1.04277 1.23032 1.00177 0.97992 0.99807 1.22961 1.03505 1.02385 0.91594 0.90289 0.92208 0.91222 0.94814 0.93511 0.92652 0.90218 0.89736 0.90630 0.94241 0.93686 0.88852 0.92227 0.88464 0.92274 0.88685 0.89694 0.94009 0.86627 0.88257 0.88573 0.88429 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 7.90 36.01 0.28 -1.13 16 2 C -0.10 -1.63 5.79 -101.13 -0.59 -2.22 16 3 C 0.03 0.63 6.58 -37.68 -0.25 0.38 16 4 F -0.10 -2.38 12.77 2.25 0.03 -2.36 16 5 C 0.54 11.46 6.84 -12.58 -0.09 11.37 16 6 O -0.55 -11.71 14.14 5.27 0.07 -11.64 16 7 N -0.58 -12.27 2.46 -176.38 -0.43 -12.71 16 8 C 0.23 5.57 4.74 -5.20 -0.02 5.55 16 9 C -0.53 -13.96 8.06 -34.44 -0.28 -14.24 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 12 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 13 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 17 C 0.12 2.23 5.36 -4.04 -0.02 2.21 16 18 C 0.04 0.70 5.28 -3.83 -0.02 0.68 16 19 N -0.53 -7.35 4.73 -234.31 -1.11 -8.46 16 20 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 21 C 0.06 0.74 7.01 37.21 0.26 1.00 16 22 O -0.39 -4.89 10.83 -35.23 -0.38 -5.27 16 23 C 0.07 0.69 7.01 37.21 0.26 0.95 16 24 C 0.02 0.22 5.65 -3.71 -0.02 0.19 16 25 C -0.12 -1.67 5.70 -91.77 -0.52 -2.19 16 26 C -0.17 -1.91 9.77 -26.69 -0.26 -2.17 16 27 C -0.17 -1.99 10.09 -26.70 -0.27 -2.26 16 28 H 0.08 1.16 7.99 -51.93 -0.42 0.74 16 29 H 0.06 0.70 6.40 -51.93 -0.33 0.37 16 30 H 0.07 1.09 6.77 -51.93 -0.35 0.74 16 31 H 0.03 0.84 8.04 -51.93 -0.42 0.43 16 32 H 0.05 1.21 5.95 -51.93 -0.31 0.90 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 34 H 0.08 1.44 6.45 -51.93 -0.33 1.10 16 35 H 0.08 1.58 7.36 -51.92 -0.38 1.19 16 36 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 37 H 0.04 0.65 8.12 -51.92 -0.42 0.23 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.12 1.76 7.87 -51.93 -0.41 1.35 16 47 H 0.10 1.01 6.46 -51.93 -0.34 0.68 16 48 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -29.82 399.06 -9.97 -39.79 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.23 Total: 2.79 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.65 Total: -0.01 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.81 Total: -45.40 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.31 Total: -16.91 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.03 Total: -2.36 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.82 -9.97 -39.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900456261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.732 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds