Wall clock time and date at job start Sat Apr 11 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.33113 * 119.99660 * 2 1 4 4 F 1.35105 * 119.99966 * 173.09437 * 3 2 1 5 5 C 1.47296 * 120.00313 * 352.80984 * 3 2 1 6 6 O 1.21612 * 119.99891 * 329.04115 * 5 3 2 7 7 N 1.34768 * 120.00111 * 149.04133 * 5 3 2 8 8 C 1.46500 * 120.00118 * 4.96354 * 7 5 3 9 9 C 1.50697 * 109.47352 * 86.28580 * 8 7 5 10 10 H 1.08000 * 119.99750 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00262 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00168 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47167 * 89.99604 * 13 11 9 15 15 H 1.48497 * 109.46965 * 209.99719 * 13 11 9 16 16 H 1.48500 * 109.46836 * 329.99654 * 13 11 9 17 17 C 1.46502 * 120.00364 * 184.96440 * 7 5 3 18 18 C 1.52995 * 109.47439 * 89.99524 * 17 7 5 19 19 N 1.46896 * 109.47598 * 180.02562 * 18 17 7 20 20 C 1.47023 * 111.00008 * 293.64007 * 19 18 17 21 21 C 1.53097 * 109.25739 * 177.60633 * 20 19 18 22 22 O 1.43015 * 109.26020 * 56.84757 * 21 20 19 23 23 C 1.43014 * 113.73753 * 301.32771 * 22 21 20 24 24 C 1.47012 * 111.00178 * 170.00217 * 19 18 17 25 25 C 1.50695 * 120.00031 * 179.97438 * 2 1 3 26 26 C 1.53002 * 117.49774 * 8.75660 * 25 2 1 27 27 C 1.52998 * 117.50485 * 300.09586 * 25 2 1 28 28 H 1.09001 * 109.46427 * 86.29490 * 1 2 3 29 29 H 1.08997 * 109.46823 * 206.29005 * 1 2 3 30 30 H 1.08995 * 109.47216 * 326.29383 * 1 2 3 31 31 H 1.09002 * 109.47473 * 206.28705 * 8 7 5 32 32 H 1.09000 * 109.46959 * 326.28706 * 8 7 5 33 33 H 0.97005 * 119.99348 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.47487 * 210.00308 * 17 7 5 35 35 H 1.09008 * 109.46767 * 329.99632 * 17 7 5 36 36 H 1.08997 * 109.47422 * 300.00824 * 18 17 7 37 37 H 1.09008 * 109.47053 * 60.00283 * 18 17 7 38 38 H 1.09001 * 109.50046 * 297.53752 * 20 19 18 39 39 H 1.08996 * 109.50686 * 57.66348 * 20 19 18 40 40 H 1.08999 * 109.50599 * 296.90640 * 21 20 19 41 41 H 1.09003 * 109.53930 * 176.80215 * 21 20 19 42 42 H 1.09003 * 109.50610 * 298.73681 * 23 22 21 43 43 H 1.08993 * 109.54447 * 178.62669 * 23 22 21 44 44 H 1.08997 * 109.50657 * 302.32571 * 24 19 18 45 45 H 1.08997 * 109.50918 * 62.41870 * 24 19 18 46 46 H 1.08996 * 115.54938 * 154.41996 * 25 2 1 47 47 H 1.08997 * 117.49749 * 359.97438 * 26 25 2 48 48 H 1.08999 * 117.49968 * 145.01492 * 26 25 2 49 49 H 1.08997 * 117.50310 * 214.97669 * 27 25 2 50 50 H 1.09002 * 117.49523 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 9 3.5163 1.1571 0.1407 5 6 1.4448 2.4234 -0.1597 6 8 0.4240 2.4607 -0.8196 7 7 1.9101 3.5447 0.4256 8 6 3.1950 3.5248 1.1290 9 6 4.3092 3.7810 0.1472 10 1 4.0828 3.9429 -0.8963 11 6 5.6177 3.8087 0.5811 12 7 5.8933 3.6119 1.8519 13 14 6.9988 4.1256 -0.6361 14 1 7.2573 5.5854 -0.7224 15 1 8.2296 3.4310 -0.1799 16 1 6.6074 3.6122 -1.9734 17 6 1.1310 4.7836 0.3585 18 6 0.1845 4.8565 1.5583 19 7 -0.5971 6.0984 1.4908 20 6 0.2673 7.2751 1.6635 21 6 -0.5760 8.5455 1.5268 22 8 -1.6400 8.5105 2.4819 23 6 -2.5019 7.3778 2.3422 24 6 -1.6781 6.0954 2.4871 25 6 2.2606 -1.3051 0.0006 26 6 1.4522 -2.5876 -0.2055 27 6 2.0246 -2.2567 1.1751 28 1 -0.3632 0.0664 -1.0256 29 1 -0.3633 -0.9214 0.4552 30 1 -0.3633 0.8549 0.5703 31 1 3.2015 4.2992 1.8961 32 1 3.3388 2.5501 1.5954 33 1 6.8138 3.6318 2.1572 34 1 1.8064 5.6389 0.3759 35 1 0.5502 4.7980 -0.5638 36 1 -0.4908 4.0011 1.5410 37 1 0.7653 4.8421 2.4807 38 1 0.7264 7.2474 2.6517 39 1 1.0451 7.2705 0.8999 40 1 -0.9916 8.6000 0.5207 41 1 0.0491 9.4195 1.7103 42 1 -2.9735 7.3984 1.3597 43 1 -3.2697 7.4064 3.1152 44 1 -2.3205 5.2299 2.3246 45 1 -1.2502 6.0483 3.4884 46 1 3.2638 -1.2688 -0.4240 47 1 0.3753 -2.4874 -0.3410 48 1 1.9237 -3.3953 -0.7653 49 1 2.8723 -2.8468 1.5230 50 1 1.3245 -1.9386 1.9477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900456261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:22 Heat of formation + Delta-G solvation = -88.250718 kcal Electronic energy + Delta-G solvation = -31057.610295 eV Core-core repulsion = 26807.360893 eV Total energy + Delta-G solvation = -4250.249402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.60460 -41.06846 -40.41471 -38.91582 -37.51077 -36.40304 -34.59874 -33.92942 -32.22923 -31.34558 -29.21110 -28.43570 -27.20673 -25.40994 -25.05144 -24.74317 -23.24897 -23.08711 -21.39306 -20.80250 -19.41496 -18.78891 -18.36140 -17.87369 -17.55396 -17.23436 -17.11786 -16.49291 -16.46276 -16.30236 -15.99718 -15.81512 -15.50940 -15.25805 -15.17464 -14.74070 -14.64191 -14.38111 -14.13319 -14.02578 -13.78280 -13.58200 -13.23065 -13.09156 -13.04134 -12.86726 -12.61133 -12.55974 -12.50818 -12.33674 -12.27474 -12.14996 -11.90015 -11.76360 -11.75232 -11.47743 -11.40566 -10.84230 -10.72455 -10.57624 -9.77886 -9.53655 -9.39107 -8.21761 -6.33780 0.18368 1.36749 1.38602 1.48469 1.87370 1.98130 2.39522 2.76621 2.95687 2.97730 3.09934 3.26880 3.62835 3.76962 3.84260 3.85629 3.90232 3.96520 4.04825 4.09320 4.16397 4.17872 4.29434 4.35385 4.40701 4.55932 4.65195 4.68274 4.70744 4.73846 4.75119 4.79982 4.80319 4.87062 4.90367 4.92570 4.98953 5.00015 5.08718 5.15082 5.25017 5.30825 5.45269 5.62448 5.70762 5.84744 5.88857 6.02365 6.15639 6.37046 6.73761 7.05575 7.35800 8.85305 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008082 B = 0.004056 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.555291 B = 6901.563024 C = 9735.147859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.052 4.052 3 C -0.034 4.034 4 F -0.131 7.131 5 C 0.545 3.455 6 O -0.558 6.558 7 N -0.589 5.589 8 C 0.253 3.747 9 C -0.533 4.533 10 H 0.045 0.955 11 C 0.025 3.975 12 N -0.920 5.920 13 Si 0.953 3.047 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.276 1.276 17 C 0.126 3.874 18 C 0.061 3.939 19 N -0.536 5.536 20 C 0.010 3.990 21 C 0.069 3.931 22 O -0.403 6.403 23 C 0.066 3.934 24 C 0.016 3.984 25 C -0.159 4.159 26 C -0.143 4.143 27 C -0.158 4.158 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.036 0.964 46 H 0.100 0.900 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.109 0.891 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.357 -2.984 0.869 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.055 4.055 3 C -0.056 4.056 4 F -0.109 7.109 5 C 0.334 3.666 6 O -0.440 6.440 7 N -0.319 5.319 8 C 0.132 3.868 9 C -0.571 4.571 10 H 0.063 0.937 11 C -0.175 4.175 12 N -0.559 5.559 13 Si 0.778 3.222 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.201 1.201 17 C 0.003 3.997 18 C -0.068 4.068 19 N -0.262 5.262 20 C -0.118 4.118 21 C -0.008 4.008 22 O -0.322 6.322 23 C -0.011 4.011 24 C -0.112 4.112 25 C -0.178 4.178 26 C -0.179 4.179 27 C -0.194 4.194 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.132 0.868 42 H 0.083 0.917 43 H 0.138 0.862 44 H 0.115 0.885 45 H 0.054 0.946 46 H 0.118 0.882 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.127 0.873 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.909 -2.745 0.366 15.164 hybrid contribution 2.253 0.118 0.197 2.264 sum -12.657 -2.628 0.563 12.939 Atomic orbital electron populations 1.20776 0.87916 1.03125 1.03585 1.22116 0.97702 0.91538 0.94154 1.19581 0.78380 0.94636 1.12996 1.91584 1.29258 1.96925 1.93155 1.18466 0.84388 0.84229 0.79552 1.90698 1.25999 1.85948 1.41344 1.48172 1.21667 1.09380 1.52636 1.19216 0.78440 0.97426 0.91685 1.21463 0.91921 1.49363 0.94391 0.93669 1.25560 1.00639 0.94589 0.96747 1.70012 1.20373 1.50019 1.15502 0.85634 0.78780 0.78605 0.79160 1.19466 1.20429 1.20060 1.21290 0.93501 0.85829 0.99052 1.22212 0.95375 0.92550 0.96627 1.62159 1.12391 1.01678 1.49980 1.22931 0.96470 0.91466 1.00926 1.22731 0.88414 0.96641 0.93027 1.87945 1.42003 1.45648 1.56605 1.22795 0.91916 0.83037 1.03326 1.22883 0.94132 1.00940 0.93197 1.21041 1.00193 0.88520 1.08017 1.23201 1.00684 0.95367 0.98689 1.23099 1.04084 1.00494 0.91758 0.89833 0.88451 0.92447 0.96269 0.95336 0.92431 0.90655 0.90207 0.90817 0.95533 0.94847 0.89415 0.91561 0.86766 0.91675 0.86198 0.88516 0.94617 0.88219 0.86607 0.86563 0.87254 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 7.90 71.24 0.56 -2.08 16 2 C -0.05 -1.72 5.79 -17.60 -0.10 -1.82 16 3 C -0.03 -1.43 6.58 23.50 0.15 -1.27 16 4 F -0.13 -6.34 12.77 44.97 0.57 -5.77 16 5 C 0.55 23.79 6.84 86.63 0.59 24.38 16 6 O -0.56 -24.21 14.14 -4.07 -0.06 -24.27 16 7 N -0.59 -26.03 2.46 -830.21 -2.05 -28.08 16 8 C 0.25 12.86 4.74 85.63 0.41 13.27 16 9 C -0.53 -29.36 8.06 25.60 0.21 -29.15 16 10 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 11 C 0.02 1.36 5.46 84.65 0.46 1.83 16 12 N -0.92 -52.77 13.29 21.45 0.28 -52.48 16 13 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 C 0.13 4.76 5.36 86.38 0.46 5.22 16 18 C 0.06 1.99 5.28 86.30 0.46 2.44 16 19 N -0.54 -14.79 4.73 -895.21 -4.23 -19.02 16 20 C 0.01 0.27 5.44 86.31 0.47 0.74 16 21 C 0.07 1.49 7.01 72.01 0.50 2.00 16 22 O -0.40 -9.54 10.83 -148.98 -1.61 -11.15 16 23 C 0.07 1.27 7.01 72.02 0.50 1.78 16 24 C 0.02 0.37 5.65 86.32 0.49 0.86 16 25 C -0.16 -4.40 5.70 -11.54 -0.07 -4.47 16 26 C -0.14 -2.63 9.77 30.62 0.30 -2.33 16 27 C -0.16 -3.31 10.09 30.62 0.31 -3.00 16 28 H 0.08 2.28 7.99 -2.39 -0.02 2.26 16 29 H 0.10 1.90 6.40 -2.39 -0.02 1.88 16 30 H 0.06 1.73 6.77 -2.39 -0.02 1.72 16 31 H 0.02 1.02 8.04 -2.39 -0.02 1.00 16 32 H 0.03 1.57 5.95 -2.39 -0.01 1.55 16 33 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 34 H 0.08 2.86 6.45 -2.39 -0.02 2.84 16 35 H 0.08 3.07 7.36 -2.38 -0.02 3.06 16 36 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 37 H 0.03 0.92 8.12 -2.38 -0.02 0.90 16 38 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.09 2.36 6.38 -2.39 -0.02 2.35 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 44 H 0.10 1.95 8.09 -2.39 -0.02 1.93 16 45 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.10 3.08 7.87 -2.39 -0.02 3.07 16 47 H 0.12 1.79 6.46 -2.39 -0.02 1.77 16 48 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -66.29 399.06 1.58 -64.71 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.93 Total: 21.74 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 5.71 Total: 8.39 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -5.99 Total: -99.58 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.67 Total: -35.42 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.57 Total: -5.77 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.29 1.58 -64.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900456261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.537 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds