Wall clock time and date at job start Sat Apr 11 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48499 * 109.47541 * 264.67907 * 3 2 1 5 5 H 1.48504 * 109.46964 * 24.67950 * 3 2 1 6 6 H 1.48500 * 109.46920 * 144.67775 * 3 2 1 7 7 C 1.38808 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00171 * 338.47222 * 7 2 1 9 9 N 1.36937 * 120.00246 * 158.47138 * 7 2 1 10 10 C 1.47173 * 126.10419 * 163.65871 * 9 7 2 11 11 C 1.53589 * 105.65433 * 149.75959 * 10 9 7 12 12 H 1.09004 * 108.72661 * 271.02053 * 11 10 9 13 13 C 1.50954 * 111.30520 * 150.29125 * 11 10 9 14 14 C 1.53167 * 111.95904 * 178.50850 * 13 11 10 15 15 N 1.49721 * 105.60163 * 99.83329 * 14 13 11 16 16 C 1.34768 * 122.75978 * 111.34283 * 15 14 13 17 17 O 1.21285 * 120.00478 * 174.67678 * 16 15 14 18 18 C 1.50700 * 120.00233 * 354.67273 * 16 15 14 19 19 F 1.39901 * 109.54073 * 55.24829 * 18 16 15 20 20 C 1.53179 * 109.53935 * 295.07852 * 18 16 15 21 21 C 1.53104 * 109.15458 * 183.23732 * 20 18 16 22 22 O 1.42900 * 109.48787 * 57.47431 * 21 20 18 23 23 C 1.42902 * 114.09941 * 298.88511 * 22 21 20 24 24 C 1.53093 * 109.41259 * 61.15799 * 23 22 21 25 25 C 1.43649 * 114.48400 * 291.61397 * 15 14 13 26 26 C 1.51105 * 114.76702 * 57.96879 * 25 15 14 27 27 C 1.51864 * 112.29139 * 274.93139 * 26 25 15 28 28 H 1.08994 * 110.94756 * 323.29993 * 27 26 25 29 29 C 1.46781 * 126.09689 * 343.67796 * 9 7 2 30 30 H 0.96996 * 120.00659 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.21088 * 30.71657 * 10 9 7 32 32 H 1.09000 * 110.21277 * 268.80457 * 10 9 7 33 33 H 1.09004 * 108.98728 * 57.86738 * 13 11 10 34 34 H 1.09004 * 108.92157 * 299.09789 * 13 11 10 35 35 H 1.09005 * 110.21196 * 340.81146 * 14 13 11 36 36 H 1.08997 * 110.32986 * 218.91388 * 14 13 11 37 37 H 1.08999 * 109.52459 * 303.05439 * 20 18 16 38 38 H 1.09001 * 109.52447 * 63.24374 * 20 18 16 39 39 H 1.09004 * 109.41202 * 297.49091 * 21 20 18 40 40 H 1.09004 * 109.49595 * 177.50998 * 21 20 18 41 41 H 1.08999 * 109.48183 * 301.18239 * 23 22 21 42 42 H 1.09001 * 109.49233 * 181.14263 * 23 22 21 43 43 H 1.09001 * 109.52520 * 182.48888 * 24 23 22 44 44 H 1.09008 * 109.52221 * 62.29859 * 24 23 22 45 45 H 1.08999 * 108.42068 * 179.33671 * 25 15 14 46 46 H 1.09002 * 108.42462 * 296.59350 * 25 15 14 47 47 H 1.08993 * 108.91985 * 154.20542 * 26 25 15 48 48 H 1.08997 * 108.84098 * 35.60252 * 26 25 15 49 49 H 1.09006 * 109.77488 * 80.66751 * 29 9 7 50 50 H 1.08994 * 109.78228 * 319.88632 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6101 1.9816 -1.3940 5 1 1.3958 2.6825 0.5846 6 1 3.4869 1.4753 0.8095 7 6 2.0103 -1.2021 -0.0005 8 1 1.5268 -2.1050 0.3423 9 7 3.3080 -1.2433 -0.4357 10 6 4.2706 -2.3293 -0.1912 11 6 5.2100 -2.3319 -1.4063 12 1 4.7886 -2.9820 -2.1731 13 6 6.5887 -2.8202 -1.0327 14 6 7.5281 -2.8635 -2.2417 15 7 8.3586 -1.6211 -2.1511 16 6 9.6779 -1.6442 -1.8769 17 8 10.3224 -0.6173 -1.9103 18 6 10.3525 -2.9460 -1.5287 19 9 10.1215 -3.8793 -2.5450 20 6 9.7890 -3.4776 -0.2072 21 6 10.5362 -4.7568 0.1791 22 8 11.9351 -4.4814 0.2747 23 6 12.5251 -4.0272 -0.9451 24 6 11.8593 -2.7175 -1.3755 25 6 7.6324 -0.4020 -2.3743 26 6 6.4708 -0.1760 -1.4347 27 6 5.2029 -0.8632 -1.9104 28 1 5.1221 -0.8232 -2.9966 29 6 3.9872 -0.2118 -1.2290 30 1 -0.4851 0.8400 0.0004 31 1 3.7501 -3.2840 -0.1157 32 1 4.8350 -2.1342 0.7207 33 1 6.5077 -3.8219 -0.6105 34 1 7.0088 -2.1518 -0.2811 35 1 6.9515 -2.8646 -3.1668 36 1 8.1652 -3.7467 -2.1948 37 1 9.9232 -2.7289 0.5735 38 1 8.7275 -3.6957 -0.3253 39 1 10.3669 -5.5190 -0.5815 40 1 10.1698 -5.1157 1.1410 41 1 12.3817 -4.7797 -1.7205 42 1 13.5914 -3.8601 -0.7932 43 1 12.2771 -2.3925 -2.3283 44 1 12.0368 -1.9529 -0.6191 45 1 8.3242 0.4343 -2.2741 46 1 7.2527 -0.4093 -3.3960 47 1 6.2837 0.8948 -1.3551 48 1 6.7341 -0.5625 -0.4501 49 1 4.3190 0.5961 -0.5768 50 1 3.3067 0.1799 -1.9850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946617905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:25 Heat of formation + Delta-G solvation = -89.685219 kcal Electronic energy + Delta-G solvation = -32240.608915 eV Core-core repulsion = 27990.297309 eV Total energy + Delta-G solvation = -4250.311607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.52064 -40.73867 -39.39126 -38.67627 -36.29855 -33.77498 -33.22424 -32.52162 -31.64090 -31.24760 -28.28226 -27.98572 -26.23813 -24.29857 -24.23603 -23.31612 -22.77300 -21.04645 -20.65351 -19.84206 -18.68687 -18.00908 -17.27141 -16.99460 -16.65213 -16.42071 -15.94261 -15.69828 -15.41661 -15.37372 -14.92635 -14.74983 -14.61769 -13.94904 -13.84193 -13.62265 -13.21566 -13.08575 -13.00992 -12.91780 -12.81666 -12.74531 -12.46921 -12.26210 -11.94008 -11.84968 -11.60185 -11.46179 -11.21613 -11.14653 -11.01316 -10.89080 -10.72779 -10.37962 -10.32160 -10.17426 -9.92858 -9.82557 -9.75760 -9.37546 -8.90228 -8.76498 -7.10059 -5.96402 -3.26619 2.08600 2.53742 3.32220 3.39752 3.45561 3.47453 3.69467 3.82328 3.93345 4.23035 4.37759 4.51895 4.59779 4.70586 4.72943 4.82343 4.85634 4.93317 4.99389 5.03823 5.07550 5.09778 5.16035 5.17793 5.22742 5.36340 5.42215 5.46228 5.51254 5.54309 5.60844 5.67920 5.70885 5.81763 5.85494 5.96857 6.03029 6.13451 6.22535 6.26646 6.38010 6.49043 6.66232 6.70035 6.75318 6.78390 7.07058 7.67806 7.71607 8.28753 8.80751 9.66685 10.16136 11.19775 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.002977 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.194182 B = 9402.277906 C = 9891.932698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.886 3.114 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.094 0.906 9 N -0.606 5.606 10 C 0.141 3.859 11 C -0.098 4.098 12 H 0.071 0.929 13 C -0.133 4.133 14 C 0.094 3.906 15 N -0.596 5.596 16 C 0.510 3.490 17 O -0.526 6.526 18 C 0.111 3.889 19 F -0.189 7.189 20 C -0.183 4.183 21 C 0.063 3.937 22 O -0.379 6.379 23 C 0.060 3.940 24 C -0.160 4.160 25 C 0.107 3.893 26 C -0.131 4.131 27 C -0.091 4.091 28 H 0.077 0.923 29 C 0.115 3.885 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.027 0.973 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.921 -9.510 -4.396 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.716 3.284 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.203 1.203 7 C -0.368 4.368 8 H 0.111 0.889 9 N -0.331 5.331 10 C 0.015 3.985 11 C -0.118 4.118 12 H 0.090 0.910 13 C -0.171 4.171 14 C -0.027 4.027 15 N -0.328 5.328 16 C 0.296 3.704 17 O -0.402 6.402 18 C 0.090 3.910 19 F -0.170 7.170 20 C -0.221 4.221 21 C -0.014 4.014 22 O -0.297 6.297 23 C -0.017 4.017 24 C -0.198 4.198 25 C -0.016 4.016 26 C -0.169 4.169 27 C -0.110 4.110 28 H 0.096 0.904 29 C -0.011 4.011 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.044 0.956 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 24.112 -8.893 -4.224 26.044 hybrid contribution -0.058 1.138 -0.352 1.193 sum 24.054 -7.755 -4.576 25.684 Atomic orbital electron populations 1.69827 1.05497 1.26575 1.53527 1.24934 0.95160 0.97412 1.00331 0.86988 0.78950 0.84699 0.77717 1.21265 1.23141 1.20276 1.18668 0.83807 0.95511 1.38829 0.88887 1.44653 1.09513 1.18887 1.60021 1.21298 0.90393 0.92877 0.93975 1.21790 0.94268 0.96109 0.99587 0.91016 1.21824 0.95372 1.02110 0.97840 1.22839 0.93365 0.86557 0.99966 1.48014 1.07302 1.09031 1.68450 1.20513 0.81910 0.90556 0.77464 1.90727 1.63446 1.34411 1.51620 1.21156 0.97630 0.85348 0.86889 1.92848 1.95409 1.66948 1.61784 1.23012 1.02622 1.00816 0.95631 1.22586 0.81007 0.94733 1.03104 1.87970 1.22139 1.86256 1.33331 1.22632 0.98128 0.93805 0.87114 1.22594 0.91529 1.00452 1.05221 1.20577 0.94545 0.87075 0.99429 1.21594 0.93838 1.01441 1.00005 1.21984 0.94531 0.94867 0.99633 0.90445 1.21714 0.92613 0.92604 0.94159 0.92703 0.93110 0.96206 0.90905 0.90397 0.89529 0.88580 0.88473 0.88045 0.92151 0.87593 0.92329 0.87797 0.88955 0.88173 0.89868 0.91693 0.90747 0.90736 0.95598 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.02 13.97 55.49 0.78 -27.24 16 2 C 0.02 0.58 5.45 -17.43 -0.10 0.48 16 3 Si 0.89 22.63 24.24 -169.99 -4.12 18.51 16 4 H -0.29 -7.01 6.51 56.52 0.37 -6.64 16 5 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.28 -6.96 6.46 56.52 0.36 -6.60 16 7 C -0.24 -6.76 10.62 -15.06 -0.16 -6.92 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 9 N -0.61 -14.22 3.21 -171.60 -0.55 -14.77 16 10 C 0.14 2.58 6.71 -3.37 -0.02 2.55 16 11 C -0.10 -1.38 2.61 -90.14 -0.23 -1.61 16 12 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 13 C -0.13 -1.40 3.21 -27.67 -0.09 -1.49 16 14 C 0.09 0.89 5.24 -2.16 -0.01 0.88 16 15 N -0.60 -6.74 2.67 -174.28 -0.46 -7.20 16 16 C 0.51 6.19 6.82 -10.99 -0.07 6.11 16 17 O -0.53 -7.92 15.47 5.55 0.09 -7.84 16 18 C 0.11 1.06 0.73 -91.59 -0.07 0.99 16 19 F -0.19 -1.82 13.85 2.25 0.03 -1.79 16 20 C -0.18 -1.47 4.92 -26.58 -0.13 -1.60 16 21 C 0.06 0.45 6.72 37.21 0.25 0.70 16 22 O -0.38 -3.37 10.77 -35.23 -0.38 -3.75 16 23 C 0.06 0.44 6.72 37.21 0.25 0.69 16 24 C -0.16 -1.39 4.56 -26.59 -0.12 -1.51 16 25 C 0.11 1.29 5.69 -6.51 -0.04 1.26 16 26 C -0.13 -1.77 4.53 -28.26 -0.13 -1.90 16 27 C -0.09 -1.40 3.14 -89.56 -0.28 -1.68 16 28 H 0.08 1.10 7.76 -51.93 -0.40 0.69 16 29 C 0.11 2.40 4.35 -3.45 -0.02 2.39 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.37 7.96 -51.93 -0.41 -0.05 16 33 H 0.07 0.65 8.02 -51.93 -0.42 0.23 16 34 H 0.08 0.90 5.56 -51.93 -0.29 0.61 16 35 H 0.09 0.80 7.85 -51.93 -0.41 0.40 16 36 H 0.10 0.80 4.47 -51.93 -0.23 0.56 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.75 4.66 -51.93 -0.24 0.51 16 39 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 40 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.94 7.96 -51.92 -0.41 0.53 16 45 H 0.08 1.08 7.02 -51.93 -0.36 0.72 16 46 H 0.06 0.73 7.70 -51.93 -0.40 0.33 16 47 H 0.07 1.04 7.66 -51.93 -0.40 0.64 16 48 H 0.07 1.05 5.77 -51.93 -0.30 0.75 16 49 H 0.03 0.58 4.39 -51.93 -0.23 0.36 16 50 H 0.05 1.19 6.61 -51.93 -0.34 0.85 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -33.04 360.74 -7.99 -41.04 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.84 Total: -1.74 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.97 Total: -0.65 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.24 Total: -49.22 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.29 Total: -11.59 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.79 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.12 Total: 18.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.04 -7.99 -41.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946617905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.648 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds