Wall clock time and date at job start Sat Apr 11 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48499 * 109.47541 * 264.67907 * 3 2 1 5 5 H 1.48504 * 109.46964 * 24.67950 * 3 2 1 6 6 H 1.48500 * 109.46920 * 144.67775 * 3 2 1 7 7 C 1.38808 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00171 * 338.47222 * 7 2 1 9 9 N 1.36937 * 120.00246 * 158.47138 * 7 2 1 10 10 C 1.47173 * 126.10419 * 163.65871 * 9 7 2 11 11 C 1.53589 * 105.65433 * 149.75959 * 10 9 7 12 12 H 1.09004 * 108.72661 * 271.02053 * 11 10 9 13 13 C 1.50954 * 111.30520 * 150.29125 * 11 10 9 14 14 C 1.53167 * 111.95904 * 178.50850 * 13 11 10 15 15 N 1.49721 * 105.60163 * 99.83329 * 14 13 11 16 16 C 1.34768 * 122.75978 * 111.34283 * 15 14 13 17 17 O 1.21285 * 120.00478 * 174.67678 * 16 15 14 18 18 C 1.50700 * 120.00233 * 354.67273 * 16 15 14 19 19 F 1.39901 * 109.54073 * 55.24829 * 18 16 15 20 20 C 1.53179 * 109.53935 * 295.07852 * 18 16 15 21 21 C 1.53104 * 109.15458 * 183.23732 * 20 18 16 22 22 O 1.42900 * 109.48787 * 57.47431 * 21 20 18 23 23 C 1.42902 * 114.09941 * 298.88511 * 22 21 20 24 24 C 1.53093 * 109.41259 * 61.15799 * 23 22 21 25 25 C 1.43649 * 114.48400 * 291.61397 * 15 14 13 26 26 C 1.51105 * 114.76702 * 57.96879 * 25 15 14 27 27 C 1.51864 * 112.29139 * 274.93139 * 26 25 15 28 28 H 1.08994 * 110.94756 * 323.29993 * 27 26 25 29 29 C 1.46781 * 126.09689 * 343.67796 * 9 7 2 30 30 H 0.96996 * 120.00659 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.21088 * 30.71657 * 10 9 7 32 32 H 1.09000 * 110.21277 * 268.80457 * 10 9 7 33 33 H 1.09004 * 108.98728 * 57.86738 * 13 11 10 34 34 H 1.09004 * 108.92157 * 299.09789 * 13 11 10 35 35 H 1.09005 * 110.21196 * 340.81146 * 14 13 11 36 36 H 1.08997 * 110.32986 * 218.91388 * 14 13 11 37 37 H 1.08999 * 109.52459 * 303.05439 * 20 18 16 38 38 H 1.09001 * 109.52447 * 63.24374 * 20 18 16 39 39 H 1.09004 * 109.41202 * 297.49091 * 21 20 18 40 40 H 1.09004 * 109.49595 * 177.50998 * 21 20 18 41 41 H 1.08999 * 109.48183 * 301.18239 * 23 22 21 42 42 H 1.09001 * 109.49233 * 181.14263 * 23 22 21 43 43 H 1.09001 * 109.52520 * 182.48888 * 24 23 22 44 44 H 1.09008 * 109.52221 * 62.29859 * 24 23 22 45 45 H 1.08999 * 108.42068 * 179.33671 * 25 15 14 46 46 H 1.09002 * 108.42462 * 296.59350 * 25 15 14 47 47 H 1.08993 * 108.91985 * 154.20542 * 26 25 15 48 48 H 1.08997 * 108.84098 * 35.60252 * 26 25 15 49 49 H 1.09006 * 109.77488 * 80.66751 * 29 9 7 50 50 H 1.08994 * 109.78228 * 319.88632 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6101 1.9816 -1.3940 5 1 1.3958 2.6825 0.5846 6 1 3.4869 1.4753 0.8095 7 6 2.0103 -1.2021 -0.0005 8 1 1.5268 -2.1050 0.3423 9 7 3.3080 -1.2433 -0.4357 10 6 4.2706 -2.3293 -0.1912 11 6 5.2100 -2.3319 -1.4063 12 1 4.7886 -2.9820 -2.1731 13 6 6.5887 -2.8202 -1.0327 14 6 7.5281 -2.8635 -2.2417 15 7 8.3586 -1.6211 -2.1511 16 6 9.6779 -1.6442 -1.8769 17 8 10.3224 -0.6173 -1.9103 18 6 10.3525 -2.9460 -1.5287 19 9 10.1215 -3.8793 -2.5450 20 6 9.7890 -3.4776 -0.2072 21 6 10.5362 -4.7568 0.1791 22 8 11.9351 -4.4814 0.2747 23 6 12.5251 -4.0272 -0.9451 24 6 11.8593 -2.7175 -1.3755 25 6 7.6324 -0.4020 -2.3743 26 6 6.4708 -0.1760 -1.4347 27 6 5.2029 -0.8632 -1.9104 28 1 5.1221 -0.8232 -2.9966 29 6 3.9872 -0.2118 -1.2290 30 1 -0.4851 0.8400 0.0004 31 1 3.7501 -3.2840 -0.1157 32 1 4.8350 -2.1342 0.7207 33 1 6.5077 -3.8219 -0.6105 34 1 7.0088 -2.1518 -0.2811 35 1 6.9515 -2.8646 -3.1668 36 1 8.1652 -3.7467 -2.1948 37 1 9.9232 -2.7289 0.5735 38 1 8.7275 -3.6957 -0.3253 39 1 10.3669 -5.5190 -0.5815 40 1 10.1698 -5.1157 1.1410 41 1 12.3817 -4.7797 -1.7205 42 1 13.5914 -3.8601 -0.7932 43 1 12.2771 -2.3925 -2.3283 44 1 12.0368 -1.9529 -0.6191 45 1 8.3242 0.4343 -2.2741 46 1 7.2527 -0.4093 -3.3960 47 1 6.2837 0.8948 -1.3551 48 1 6.7341 -0.5625 -0.4501 49 1 4.3190 0.5961 -0.5768 50 1 3.3067 0.1799 -1.9850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946617905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:24 Heat of formation + Delta-G solvation = -111.661038 kcal Electronic energy + Delta-G solvation = -32241.561858 eV Core-core repulsion = 27990.297309 eV Total energy + Delta-G solvation = -4251.264550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.25286 -41.72135 -40.36249 -39.53342 -37.55441 -34.96138 -34.48818 -33.48721 -33.06414 -32.23516 -29.58226 -29.31633 -27.19242 -25.76670 -24.92332 -24.43455 -23.75134 -22.42642 -21.73531 -20.65974 -19.94812 -19.02014 -18.69930 -18.02802 -17.43027 -17.30999 -17.01696 -16.68520 -16.63771 -16.15273 -15.93763 -15.78103 -15.69186 -15.42599 -15.13504 -14.86154 -14.29019 -14.18950 -14.01252 -13.90039 -13.80576 -13.62257 -13.51367 -13.40620 -13.21527 -13.13975 -12.96958 -12.64264 -12.45598 -12.24095 -12.08868 -11.98782 -11.80273 -11.75572 -11.61504 -11.36621 -11.25569 -11.02647 -10.99374 -10.87951 -10.52254 -9.84068 -9.09441 -8.19754 -5.44957 1.18352 1.26177 1.34717 1.42621 1.68143 2.37863 2.81686 2.95889 3.02388 3.15292 3.25400 3.36106 3.53388 3.60322 3.70165 3.76825 3.79970 3.90268 4.08177 4.14680 4.17509 4.24497 4.33432 4.44346 4.50139 4.53373 4.54385 4.58797 4.60940 4.62887 4.74654 4.78540 4.85080 4.85869 4.89034 4.91522 4.95273 5.00335 5.04471 5.07839 5.09571 5.24570 5.32480 5.44856 5.58952 5.68228 6.08506 6.16130 6.18732 6.75520 6.80915 7.53482 8.11178 9.00202 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.002977 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.194182 B = 9402.277906 C = 9891.932698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.039 4.039 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.311 1.311 6 H -0.272 1.272 7 C -0.229 4.229 8 H 0.065 0.935 9 N -0.626 5.626 10 C 0.133 3.867 11 C -0.083 4.083 12 H 0.082 0.918 13 C -0.126 4.126 14 C 0.098 3.902 15 N -0.595 5.595 16 C 0.505 3.495 17 O -0.561 6.561 18 C 0.115 3.885 19 F -0.187 7.187 20 C -0.179 4.179 21 C 0.060 3.940 22 O -0.395 6.395 23 C 0.062 3.938 24 C -0.159 4.159 25 C 0.114 3.886 26 C -0.121 4.121 27 C -0.082 4.082 28 H 0.097 0.903 29 C 0.109 3.891 30 H 0.262 0.738 31 H 0.050 0.950 32 H 0.026 0.974 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.017 0.983 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.550 -10.929 -5.252 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.234 4.234 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.239 1.239 6 H -0.197 1.197 7 C -0.358 4.358 8 H 0.083 0.917 9 N -0.352 5.352 10 C 0.009 3.991 11 C -0.102 4.102 12 H 0.101 0.899 13 C -0.164 4.164 14 C -0.023 4.023 15 N -0.326 5.326 16 C 0.292 3.708 17 O -0.440 6.440 18 C 0.094 3.906 19 F -0.168 7.168 20 C -0.217 4.217 21 C -0.016 4.016 22 O -0.314 6.314 23 C -0.015 4.015 24 C -0.198 4.198 25 C -0.010 4.010 26 C -0.160 4.160 27 C -0.101 4.101 28 H 0.115 0.885 29 C -0.016 4.016 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.085 0.915 42 H 0.137 0.863 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.034 0.966 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 26.786 -10.348 -5.092 29.164 hybrid contribution -0.899 1.494 -0.072 1.745 sum 25.887 -8.854 -5.164 27.842 Atomic orbital electron populations 1.69947 1.07049 1.27126 1.56400 1.25548 0.95779 1.00558 1.01477 0.86011 0.77518 0.80617 0.78334 1.19776 1.23926 1.19736 1.18661 0.85823 0.94374 1.36951 0.91742 1.44805 1.08982 1.20929 1.60453 1.21558 0.90193 0.91115 0.96260 1.21707 0.95448 0.95473 0.97580 0.89941 1.21759 0.93105 1.03272 0.98261 1.22949 0.93180 0.86300 0.99828 1.48112 1.07277 1.09412 1.67827 1.21015 0.82008 0.91094 0.76691 1.90711 1.64286 1.35902 1.53118 1.21125 0.97856 0.84150 0.87490 1.92851 1.95403 1.66647 1.61854 1.23017 1.03216 1.01034 0.94389 1.22734 0.80203 0.94353 1.04317 1.87955 1.23046 1.86284 1.34124 1.22719 0.98766 0.93062 0.86930 1.22592 0.91287 1.01028 1.04846 1.20422 0.93658 0.87345 0.99590 1.21473 0.93495 1.00852 1.00142 1.21937 0.92577 0.95331 1.00244 0.88527 1.21810 0.94090 0.92361 0.93374 0.92943 0.93187 0.95650 0.88261 0.91024 0.88443 0.86767 0.89152 0.87069 0.91155 0.86116 0.91513 0.86311 0.89131 0.89287 0.90945 0.90333 0.91344 0.91151 0.96586 0.95225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.85 13.97 21.65 0.30 -60.55 16 2 C -0.04 -2.35 5.45 84.86 0.46 -1.88 16 3 Si 0.95 47.69 24.24 68.60 1.66 49.36 16 4 H -0.27 -12.92 6.51 99.48 0.65 -12.27 16 5 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 6 H -0.27 -13.27 6.46 99.48 0.64 -12.63 16 7 C -0.23 -13.11 10.62 84.03 0.89 -12.22 16 8 H 0.06 3.96 8.06 -2.91 -0.02 3.93 16 9 N -0.63 -29.16 3.21 -696.81 -2.24 -31.40 16 10 C 0.13 4.66 6.71 86.45 0.58 5.24 16 11 C -0.08 -2.06 2.61 -10.48 -0.03 -2.09 16 12 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 13 C -0.13 -2.15 3.21 29.98 0.10 -2.05 16 14 C 0.10 1.45 5.24 85.81 0.45 1.90 16 15 N -0.60 -11.71 2.67 -823.68 -2.20 -13.90 16 16 C 0.51 11.21 6.82 87.66 0.60 11.81 16 17 O -0.56 -16.36 15.47 -3.05 -0.05 -16.41 16 18 C 0.12 1.91 0.73 -11.42 -0.01 1.90 16 19 F -0.19 -2.97 13.85 44.97 0.62 -2.35 16 20 C -0.18 -2.35 4.92 30.69 0.15 -2.20 16 21 C 0.06 0.69 6.72 72.02 0.48 1.17 16 22 O -0.40 -6.06 10.77 -148.98 -1.60 -7.67 16 23 C 0.06 0.76 6.72 72.01 0.48 1.25 16 24 C -0.16 -2.51 4.56 30.68 0.14 -2.37 16 25 C 0.11 2.45 5.69 86.29 0.49 2.94 16 26 C -0.12 -3.01 4.53 29.60 0.13 -2.88 16 27 C -0.08 -2.30 3.14 -10.10 -0.03 -2.34 16 28 H 0.10 2.40 7.76 -2.39 -0.02 2.39 16 29 C 0.11 4.44 4.35 86.61 0.38 4.82 16 30 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.03 0.88 7.96 -2.39 -0.02 0.86 16 33 H 0.10 1.26 8.02 -2.39 -0.02 1.24 16 34 H 0.07 1.39 5.56 -2.38 -0.01 1.38 16 35 H 0.10 1.32 7.85 -2.38 -0.02 1.31 16 36 H 0.11 1.35 4.47 -2.39 -0.01 1.34 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.20 4.66 -2.39 -0.01 1.19 16 39 H 0.07 0.67 7.93 -2.38 -0.02 0.65 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 0.72 7.93 -2.39 -0.02 0.71 16 42 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 1.60 7.96 -2.38 -0.02 1.58 16 45 H 0.07 1.77 7.02 -2.39 -0.02 1.75 16 46 H 0.08 1.51 7.70 -2.39 -0.02 1.49 16 47 H 0.07 1.80 7.66 -2.39 -0.02 1.78 16 48 H 0.07 1.82 5.77 -2.39 -0.01 1.81 16 49 H 0.02 0.71 4.39 -2.38 -0.01 0.70 16 50 H 0.03 1.33 6.61 -2.39 -0.02 1.32 16 Total: -1.00 -73.70 360.74 2.60 -71.10 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.83 Total: 8.81 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.27 Total: 3.01 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.13 Total: -105.86 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.65 Total: -24.08 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.62 Total: -2.35 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.66 Total: 49.36 kcal Total: -73.70 2.60 -71.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946617905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.558 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds