Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99563 * 2 1 4 4 H 1.48504 * 109.47087 * 274.34667 * 3 2 1 5 5 H 1.48498 * 109.47217 * 34.34629 * 3 2 1 6 6 H 1.48495 * 109.47035 * 154.34811 * 3 2 1 7 7 C 1.38800 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00153 * 162.59567 * 7 2 1 9 9 N 1.36936 * 120.00290 * 342.59608 * 7 2 1 10 10 C 1.46927 * 120.64692 * 152.28384 * 9 7 2 11 11 C 1.53189 * 108.77780 * 126.34653 * 10 9 7 12 12 C 1.53002 * 109.34440 * 54.57835 * 11 10 9 13 13 C 1.52985 * 109.63288 * 298.78915 * 12 11 10 14 14 C 1.46931 * 120.63855 * 332.30424 * 9 7 2 15 15 C 1.52804 * 109.43156 * 178.99678 * 12 11 10 16 16 N 1.47152 * 108.65002 * 188.08208 * 15 12 11 17 17 C 1.34773 * 120.98849 * 230.41042 * 16 15 12 18 18 O 1.21284 * 119.99655 * 359.71687 * 17 16 15 19 19 C 1.50706 * 120.00447 * 179.72115 * 17 16 15 20 20 H 1.09004 * 110.53497 * 302.60967 * 19 17 16 21 21 C 1.54891 * 110.48349 * 65.22342 * 19 17 16 22 22 C 1.54893 * 102.74642 * 156.62445 * 21 19 17 23 23 C 1.54272 * 104.19525 * 322.05485 * 22 21 19 24 24 H 1.09001 * 110.03063 * 264.33023 * 23 22 21 25 25 F 1.39899 * 110.07291 * 142.91615 * 23 22 21 26 26 C 1.53879 * 106.59750 * 23.61065 * 23 22 21 27 27 C 1.47156 * 118.02860 * 50.13748 * 16 15 12 28 28 C 1.53303 * 108.37022 * 309.67583 * 27 16 15 29 29 O 1.42894 * 109.54985 * 59.04992 * 12 11 10 30 30 H 0.96997 * 120.00453 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58272 * 6.56149 * 10 9 7 32 32 H 1.09001 * 109.58608 * 246.13937 * 10 9 7 33 33 H 1.08994 * 109.49160 * 294.61750 * 11 10 9 34 34 H 1.08992 * 109.51386 * 174.55129 * 11 10 9 35 35 H 1.09003 * 109.49039 * 181.17328 * 13 12 11 36 36 H 1.08999 * 109.48982 * 301.24247 * 13 12 11 37 37 H 1.09004 * 109.59010 * 353.43292 * 14 9 7 38 38 H 1.08999 * 109.58842 * 113.71656 * 14 9 7 39 39 H 1.08993 * 109.61071 * 68.24844 * 15 12 11 40 40 H 1.09000 * 109.50469 * 307.84976 * 15 12 11 41 41 H 1.09000 * 110.75193 * 274.93363 * 21 19 17 42 42 H 1.09001 * 110.76000 * 38.30762 * 21 19 17 43 43 H 1.08998 * 110.48613 * 203.37975 * 22 21 19 44 44 H 1.08998 * 110.48706 * 80.72961 * 22 21 19 45 45 H 1.08995 * 110.03258 * 240.71627 * 26 23 22 46 46 H 1.08994 * 110.07135 * 119.30572 * 26 23 22 47 47 H 1.08998 * 109.68386 * 69.39922 * 27 16 15 48 48 H 1.08998 * 109.68651 * 189.95763 * 27 16 15 49 49 H 1.09001 * 109.51050 * 172.27515 * 28 27 16 50 50 H 1.09000 * 109.51359 * 292.42976 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4056 2.0996 -1.3961 5 1 1.4964 2.6244 0.7899 6 1 3.5905 1.4156 0.6061 7 6 2.0102 -1.2020 0.0005 8 1 3.0532 -1.2235 -0.2792 9 7 1.3727 -2.3607 0.3558 10 6 1.8187 -3.6549 -0.1780 11 6 2.0763 -4.6088 0.9926 12 6 0.8235 -4.6872 1.8676 13 6 0.5037 -3.3020 2.4327 14 6 0.2290 -2.3337 1.2778 15 6 1.0697 -5.6574 3.0221 16 7 -0.1988 -5.8698 3.7369 17 6 -0.2702 -5.7419 5.0767 18 8 0.7217 -5.4527 5.7119 19 6 -1.5824 -5.9583 5.7856 20 1 -2.3443 -5.2844 5.3938 21 6 -2.0378 -7.4320 5.6450 22 6 -2.9802 -7.6159 6.8604 23 6 -2.3030 -6.8116 7.9893 24 1 -1.6925 -7.4728 8.6043 25 9 -3.2719 -6.1825 8.7784 26 6 -1.4142 -5.7577 7.3059 27 6 -1.3887 -6.2199 2.9450 28 6 -1.5171 -5.2139 1.7954 29 8 -0.2783 -5.1506 1.0846 30 1 -0.4850 0.8400 -0.0004 31 1 2.7383 -3.5181 -0.7470 32 1 1.0451 -4.0698 -0.8242 33 1 2.9119 -4.2385 1.5864 34 1 2.3142 -5.6006 0.6085 35 1 -0.3768 -3.3645 3.0722 36 1 1.3518 -2.9421 3.0151 37 1 0.0994 -1.3248 1.6698 38 1 -0.6739 -2.6390 0.7491 39 1 1.8086 -5.2356 3.7032 40 1 1.4325 -6.6069 2.6284 41 1 -2.5789 -7.5816 4.7106 42 1 -1.1853 -8.1079 5.7114 43 1 -3.0513 -8.6691 7.1321 44 1 -3.9679 -7.2097 6.6422 45 1 -0.3724 -5.9073 7.5893 46 1 -1.7375 -4.7558 7.5883 47 1 -1.2780 -7.2264 2.5415 48 1 -2.2765 -6.1723 3.5755 49 1 -2.3093 -5.5338 1.1185 50 1 -1.7565 -4.2296 2.1980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949170618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -106.968874 kcal Electronic energy + Delta-G solvation = -31906.821170 eV Core-core repulsion = 27655.760088 eV Total energy + Delta-G solvation = -4251.061082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.88256 -40.88082 -39.21998 -36.99213 -36.24345 -34.61248 -33.09805 -31.03865 -30.08445 -29.59565 -28.88685 -28.73561 -26.62294 -24.26197 -23.57520 -22.33857 -22.06270 -21.20031 -20.47895 -19.04954 -18.87730 -17.92212 -16.94537 -16.60032 -16.49441 -15.89468 -15.68806 -15.11899 -14.93541 -14.79738 -14.67422 -14.45853 -14.13867 -13.93347 -13.77592 -13.57298 -13.33403 -13.21791 -13.02038 -12.35791 -12.21161 -12.08106 -11.87503 -11.68477 -11.61230 -11.56308 -11.47065 -11.26332 -11.09572 -11.05133 -10.84414 -10.72877 -10.57150 -10.38239 -10.28165 -10.13821 -9.84750 -9.78532 -9.51577 -9.33763 -8.45078 -8.40293 -6.62886 -5.76311 -3.17396 2.49894 2.79144 3.38790 3.46148 3.48877 3.90735 3.93039 3.97557 4.19049 4.34823 4.52397 4.67890 4.75924 4.79689 4.82364 4.92136 4.97864 5.05180 5.11197 5.13005 5.20475 5.26496 5.34678 5.40933 5.41367 5.46536 5.56358 5.68635 5.71080 5.72287 5.82505 5.86124 5.90528 5.92520 6.05270 6.26532 6.32178 6.39095 6.44808 6.55391 6.66354 6.82381 7.06573 7.27545 7.39138 7.52893 7.69360 7.81792 8.05586 8.47713 9.24441 9.88526 10.45939 11.32315 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.002917 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.706011 B = 9597.338676 C =10277.085674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.117 3.883 13 C -0.160 4.160 14 C 0.180 3.820 15 C 0.089 3.911 16 N -0.606 5.606 17 C 0.523 3.477 18 O -0.538 6.538 19 C -0.113 4.113 20 H 0.105 0.895 21 C -0.114 4.114 22 C -0.148 4.148 23 C 0.085 3.915 24 H 0.089 0.911 25 F -0.213 7.213 26 C -0.139 4.139 27 C 0.070 3.930 28 C 0.043 3.957 29 O -0.358 6.358 30 H 0.252 0.748 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.021 0.979 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 -18.144 11.163 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.025 3.975 11 C -0.157 4.157 12 C 0.077 3.923 13 C -0.199 4.199 14 C 0.054 3.946 15 C -0.033 4.033 16 N -0.340 5.340 17 C 0.311 3.689 18 O -0.415 6.415 19 C -0.135 4.135 20 H 0.123 0.877 21 C -0.152 4.152 22 C -0.186 4.186 23 C 0.049 3.951 24 H 0.107 0.893 25 F -0.194 7.194 26 C -0.177 4.177 27 C -0.053 4.053 28 C -0.035 4.035 29 O -0.277 6.277 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.039 0.961 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.110 0.890 49 H 0.119 0.881 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.312 -17.865 11.323 22.073 hybrid contribution 0.162 0.974 0.292 1.029 sum -6.150 -16.892 11.614 21.402 Atomic orbital electron populations 1.70037 1.05252 1.25340 1.54119 1.25019 0.95265 0.98367 1.01082 0.86316 0.79265 0.83843 0.77579 1.21489 1.21615 1.20446 1.19189 0.92695 0.84928 1.41181 0.91702 1.44036 1.35860 1.01396 1.50110 1.20792 0.97750 0.86521 0.92482 1.21994 0.94330 1.00281 0.99106 1.21653 0.88046 0.92621 0.90007 1.22704 1.00786 0.95864 1.00567 1.20640 0.88989 0.97497 0.87470 1.22372 0.86019 0.99955 0.94985 1.48054 1.10761 1.69222 1.05915 1.20387 0.90442 0.76393 0.81637 1.90686 1.37762 1.47903 1.65189 1.22107 0.95902 0.99127 0.96328 0.87656 1.22581 0.99518 0.94288 0.98822 1.22986 0.99971 1.01084 0.94526 1.22274 0.87668 0.93864 0.91287 0.89340 1.92826 1.65766 1.84301 1.76502 1.22707 1.02251 0.99905 0.92811 1.22628 0.88283 0.99896 0.94477 1.22920 0.88236 0.98478 0.93902 1.88019 1.16191 1.86348 1.37121 0.93756 0.92869 0.95484 0.90857 0.92235 0.93308 0.91798 0.89763 0.96062 0.88413 0.91289 0.89731 0.90384 0.90042 0.89683 0.88315 0.89670 0.90570 0.88958 0.88098 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 2 C 0.00 0.03 4.91 -17.44 -0.09 -0.06 16 3 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -14.91 2.99 -172.32 -0.52 -15.43 16 10 C 0.15 3.20 6.28 -3.71 -0.02 3.18 16 11 C -0.12 -2.03 5.10 -26.63 -0.14 -2.17 16 12 C 0.12 1.95 0.68 -90.73 -0.06 1.89 16 13 C -0.16 -3.11 4.31 -26.64 -0.11 -3.22 16 14 C 0.18 4.31 5.07 -3.71 -0.02 4.30 16 15 C 0.09 1.29 5.26 -3.79 -0.02 1.27 16 16 N -0.61 -7.63 2.53 -172.57 -0.44 -8.07 16 17 C 0.52 6.83 7.07 -10.98 -0.08 6.75 16 18 O -0.54 -9.00 14.89 5.55 0.08 -8.91 16 19 C -0.11 -1.06 2.29 -90.11 -0.21 -1.27 16 20 H 0.11 0.90 7.55 -51.93 -0.39 0.50 16 21 C -0.11 -0.76 5.57 -24.74 -0.14 -0.90 16 22 C -0.15 -0.92 6.62 -25.07 -0.17 -1.08 16 23 C 0.09 0.69 4.68 -25.61 -0.12 0.57 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 25 F -0.21 -2.22 17.06 2.25 0.04 -2.18 16 26 C -0.14 -1.34 6.03 -25.61 -0.15 -1.50 16 27 C 0.07 0.69 5.66 -3.53 -0.02 0.67 16 28 C 0.04 0.54 6.60 37.31 0.25 0.78 16 29 O -0.36 -5.92 9.01 -35.23 -0.32 -6.24 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 31 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 32 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.89 6.16 -51.93 -0.32 0.57 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 2.29 6.04 -51.93 -0.31 1.98 16 38 H 0.02 0.54 7.83 -51.93 -0.41 0.13 16 39 H 0.10 1.56 7.07 -51.93 -0.37 1.19 16 40 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 41 H 0.08 0.44 6.36 -51.93 -0.33 0.11 16 42 H 0.08 0.55 8.05 -51.93 -0.42 0.14 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 45 H 0.10 1.09 6.85 -51.93 -0.36 0.73 16 46 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.66 4.72 -51.93 -0.25 0.42 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.06 0.89 6.29 -51.93 -0.33 0.57 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -32.64 374.44 -9.22 -41.85 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.06 Total: 0.06 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.24 Total: 2.14 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.33 Total: -49.22 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.23 Total: -15.15 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.64 -9.22 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949170618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.116 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds