Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99783 * 2 1 4 4 H 1.48499 * 109.47205 * 239.99955 * 3 2 1 5 5 H 1.48496 * 109.47459 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46920 * 120.00083 * 3 2 1 7 7 C 1.38805 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00572 * 160.57930 * 7 2 1 9 9 N 1.36938 * 119.99912 * 340.58458 * 7 2 1 10 10 C 1.46930 * 120.64127 * 336.66448 * 9 7 2 11 11 C 1.53189 * 108.77590 * 233.69821 * 10 9 7 12 12 C 1.52997 * 109.34729 * 305.42176 * 11 10 9 13 13 C 1.52991 * 109.63164 * 61.21017 * 12 11 10 14 14 C 1.46937 * 120.64634 * 156.68725 * 9 7 2 15 15 C 1.53254 * 109.36307 * 181.14998 * 12 11 10 16 16 N 1.47156 * 108.40806 * 172.09824 * 15 12 11 17 17 C 1.34775 * 120.98863 * 129.49744 * 16 15 12 18 18 O 1.21283 * 119.99876 * 175.01361 * 17 16 15 19 19 C 1.50701 * 119.99732 * 355.02237 * 17 16 15 20 20 H 1.08997 * 110.43871 * 314.82650 * 19 17 16 21 21 C 1.54273 * 110.48186 * 192.29142 * 19 17 16 22 22 C 1.53883 * 106.59728 * 217.70946 * 21 19 17 23 23 C 1.54267 * 106.59533 * 359.97438 * 22 21 19 24 24 H 1.09002 * 110.48463 * 142.28992 * 23 22 21 25 25 F 1.39901 * 110.48637 * 264.79898 * 23 22 21 26 26 C 1.54891 * 110.48849 * 77.51769 * 19 17 16 27 27 C 1.47155 * 118.02303 * 309.52264 * 16 15 12 28 28 C 1.53295 * 108.37386 * 50.59120 * 27 16 15 29 29 O 1.42894 * 109.55151 * 300.95397 * 12 11 10 30 30 H 0.97001 * 119.99832 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.58698 * 113.90398 * 10 9 7 32 32 H 1.09001 * 109.69762 * 353.55092 * 10 9 7 33 33 H 1.09000 * 109.49226 * 185.46133 * 11 10 9 34 34 H 1.09004 * 109.51607 * 65.39718 * 11 10 9 35 35 H 1.09001 * 109.49256 * 58.75667 * 13 12 11 36 36 H 1.08997 * 109.48929 * 178.82907 * 13 12 11 37 37 H 1.08993 * 109.58660 * 246.09602 * 14 9 7 38 38 H 1.09005 * 109.58385 * 6.37689 * 14 9 7 39 39 H 1.08998 * 109.67947 * 52.36770 * 15 12 11 40 40 H 1.09001 * 109.67905 * 291.82473 * 15 12 11 41 41 H 1.09002 * 110.03204 * 336.99139 * 21 19 17 42 42 H 1.08995 * 110.03498 * 98.42779 * 21 19 17 43 43 H 1.08998 * 110.03191 * 119.28582 * 22 21 19 44 44 H 1.09000 * 110.02948 * 240.66504 * 22 21 19 45 45 H 1.09001 * 110.75285 * 274.93059 * 26 19 17 46 46 H 1.08995 * 110.75747 * 38.30324 * 26 19 17 47 47 H 1.09001 * 109.68215 * 170.31754 * 27 16 15 48 48 H 1.09000 * 109.68089 * 290.83337 * 27 16 15 49 49 H 1.08994 * 109.51165 * 67.58360 * 28 27 16 50 50 H 1.09002 * 109.50887 * 187.72364 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0443 -1.2285 -0.3115 9 7 1.3841 -2.3544 0.3932 10 6 0.2091 -2.3049 1.2740 11 6 0.4637 -3.2054 2.4868 12 6 0.8309 -4.6108 2.0064 13 6 2.1109 -4.5503 1.1707 14 6 1.8744 -3.6645 -0.0566 15 6 1.0576 -5.5194 3.2196 16 7 1.2205 -6.9014 2.7412 17 6 2.2645 -7.6551 3.1393 18 8 2.3336 -8.8194 2.8068 19 6 3.3459 -7.0510 3.9977 20 1 3.6387 -6.0752 3.6103 21 6 4.5665 -7.9917 4.0696 22 6 5.1107 -7.8966 5.5058 23 6 4.2022 -6.9010 6.2562 24 1 4.0444 -7.2284 7.2839 25 9 4.7579 -5.6173 6.2325 26 6 2.8696 -6.9337 5.4669 27 6 0.2098 -7.4359 1.8147 28 6 0.0271 -6.4343 0.6686 29 8 -0.2340 -5.1384 1.2130 30 1 -0.4850 0.8401 0.0004 31 1 -0.6683 -2.6596 0.7331 32 1 0.0431 -1.2806 1.6078 33 1 -0.4368 -3.2540 3.0991 34 1 1.2837 -2.7972 3.0777 35 1 2.9181 -4.1313 1.7715 36 1 2.3818 -5.5552 0.8471 37 1 1.1321 -4.1295 -0.7053 38 1 2.8087 -3.5369 -0.6033 39 1 0.1983 -5.4611 3.8876 40 1 1.9571 -5.2062 3.7497 41 1 4.2621 -9.0156 3.8527 42 1 5.3283 -7.6698 3.3596 43 1 5.0705 -8.8743 5.9859 44 1 6.1369 -7.5294 5.4927 45 1 2.3083 -6.0118 5.6185 46 1 2.2736 -7.8012 5.7502 47 1 0.5469 -8.3928 1.4159 48 1 -0.7357 -7.5698 2.3402 49 1 0.9351 -6.4003 0.0667 50 1 -0.8121 -6.7433 0.0455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949170621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = -105.760092 kcal Electronic energy + Delta-G solvation = -32310.425465 eV Core-core repulsion = 28059.416800 eV Total energy + Delta-G solvation = -4251.008665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -47.83405 -40.87410 -39.19827 -36.95424 -36.09601 -34.68684 -33.02112 -31.28557 -30.12093 -29.69946 -28.84445 -28.41064 -26.81711 -24.26091 -23.77140 -22.35447 -21.81273 -20.98526 -20.59233 -19.09449 -18.83854 -17.82907 -16.93559 -16.72787 -16.19703 -16.11216 -15.39708 -15.29291 -15.03108 -14.86257 -14.71065 -14.48980 -14.41352 -13.77240 -13.61718 -13.36898 -13.31293 -13.24311 -12.97004 -12.53319 -12.26181 -11.96123 -11.81770 -11.65356 -11.59668 -11.55705 -11.41323 -11.14512 -11.09354 -11.05760 -10.85392 -10.76425 -10.63821 -10.40496 -10.30099 -10.10342 -9.82661 -9.79636 -9.55285 -9.37950 -8.45392 -8.41958 -6.70104 -5.76127 -3.14351 2.44888 2.78929 3.39790 3.45975 3.47148 3.89317 3.97738 4.00970 4.26457 4.41642 4.51469 4.66479 4.77381 4.88535 4.93660 4.98402 5.06961 5.09593 5.11606 5.15271 5.25430 5.28203 5.36421 5.40397 5.43365 5.47865 5.58080 5.63737 5.65825 5.74691 5.76455 5.86227 5.93785 6.00607 6.01342 6.23978 6.25679 6.33629 6.47579 6.51368 6.64054 6.71507 6.96828 7.25073 7.42466 7.54481 7.74937 7.81785 8.01701 8.44876 9.23314 9.87845 10.43008 11.31745 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.003585 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.137260 B = 7808.530131 C = 9139.639245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.000 4.000 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.173 3.827 11 C -0.127 4.127 12 C 0.116 3.884 13 C -0.155 4.155 14 C 0.152 3.848 15 C 0.080 3.920 16 N -0.607 5.607 17 C 0.527 3.473 18 O -0.545 6.545 19 C -0.116 4.116 20 H 0.105 0.895 21 C -0.113 4.113 22 C -0.148 4.148 23 C 0.085 3.915 24 H 0.092 0.908 25 F -0.206 7.206 26 C -0.138 4.138 27 C 0.079 3.921 28 C 0.044 3.956 29 O -0.355 6.355 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.188 -16.476 11.672 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.166 4.166 12 C 0.076 3.924 13 C -0.195 4.195 14 C 0.026 3.974 15 C -0.043 4.043 16 N -0.340 5.340 17 C 0.315 3.685 18 O -0.423 6.423 19 C -0.138 4.138 20 H 0.123 0.877 21 C -0.151 4.151 22 C -0.186 4.186 23 C 0.049 3.951 24 H 0.109 0.891 25 F -0.187 7.187 26 C -0.176 4.176 27 C -0.044 4.044 28 C -0.034 4.034 29 O -0.274 6.274 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.958 -16.805 11.430 20.706 hybrid contribution 0.629 0.807 0.012 1.023 sum 4.587 -15.999 11.442 20.197 Atomic orbital electron populations 1.70037 1.05170 1.25499 1.53990 1.24908 0.95230 0.98230 1.01466 0.86395 0.78947 0.83534 0.78089 1.21008 1.21654 1.21111 1.19184 0.93562 0.85255 1.39986 0.91605 1.44087 1.33206 1.00345 1.53725 1.20792 0.88364 0.98870 0.87262 1.22211 1.00755 0.92438 1.01229 1.21769 0.88041 0.93625 0.88938 1.22552 0.96833 0.99758 1.00328 1.20741 0.97281 0.87020 0.92386 1.22729 1.03016 0.80608 0.97934 1.48122 1.24987 1.14224 1.46693 1.20401 0.82028 0.85958 0.80065 1.90649 1.77617 1.16599 1.57440 1.22178 0.94790 1.01431 0.95367 0.87688 1.22104 0.95526 1.01152 0.96295 1.22780 1.00074 0.99701 0.96054 1.22318 0.92926 0.79263 1.00572 0.89057 1.92847 1.86750 1.41190 1.97929 1.23124 0.97158 1.04285 0.93005 1.22331 0.91668 0.98740 0.91657 1.22917 1.02381 0.83613 0.94452 1.88082 1.40328 1.31151 1.67819 0.93609 0.95602 0.88670 0.92314 0.91144 0.91421 0.92932 0.96111 0.93080 0.90598 0.88895 0.89163 0.90923 0.89882 0.90083 0.89319 0.89131 0.88595 0.90929 0.92315 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.93 10.99 55.49 0.61 -25.32 16 2 C 0.00 -0.01 4.91 -17.43 -0.09 -0.09 16 3 Si 0.90 21.51 29.60 -169.99 -5.03 16.48 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.80 9.63 -15.06 -0.15 -6.95 16 8 H 0.07 1.76 7.87 -52.48 -0.41 1.34 16 9 N -0.59 -14.60 3.01 -172.31 -0.52 -15.11 16 10 C 0.17 4.06 5.14 -3.71 -0.02 4.04 16 11 C -0.13 -2.29 5.10 -26.64 -0.14 -2.43 16 12 C 0.12 1.86 0.68 -90.49 -0.06 1.80 16 13 C -0.16 -2.63 4.33 -26.64 -0.12 -2.74 16 14 C 0.15 3.19 6.28 -3.71 -0.02 3.16 16 15 C 0.08 1.01 4.79 -3.55 -0.02 1.00 16 16 N -0.61 -7.71 2.52 -172.30 -0.43 -8.14 16 17 C 0.53 6.84 6.97 -10.99 -0.08 6.76 16 18 O -0.55 -8.50 14.93 5.56 0.08 -8.41 16 19 C -0.12 -1.23 2.25 -90.11 -0.20 -1.43 16 20 H 0.11 1.16 7.11 -51.93 -0.37 0.79 16 21 C -0.11 -1.09 6.27 -25.60 -0.16 -1.25 16 22 C -0.15 -1.14 6.61 -25.61 -0.17 -1.31 16 23 C 0.09 0.70 4.65 -25.06 -0.12 0.58 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 25 F -0.21 -2.28 17.18 2.25 0.04 -2.25 16 26 C -0.14 -1.19 5.69 -24.72 -0.14 -1.33 16 27 C 0.08 0.96 6.62 -3.53 -0.02 0.94 16 28 C 0.04 0.59 6.60 37.31 0.25 0.84 16 29 O -0.36 -5.99 9.00 -35.23 -0.32 -6.31 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 32 H 0.10 2.51 5.75 -51.93 -0.30 2.21 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.83 6.15 -51.93 -0.32 0.51 16 37 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 38 H 0.05 1.06 7.91 -51.93 -0.41 0.65 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.07 4.90 -51.93 -0.25 0.82 16 41 H 0.09 0.98 6.74 -51.93 -0.35 0.63 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 45 H 0.09 0.75 7.10 -51.93 -0.37 0.38 16 46 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 47 H 0.10 1.18 7.12 -51.93 -0.37 0.81 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.83 6.29 -51.93 -0.33 0.51 16 50 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -31.48 375.42 -9.23 -40.71 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.07 Total: 1.12 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.25 Total: 1.58 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.34 Total: -48.58 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.23 Total: -14.72 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.48 -9.23 -40.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949170621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.053 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds