Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99700 * 2 1 4 4 H 1.48499 * 109.47422 * 85.01332 * 3 2 1 5 5 H 1.48504 * 109.47050 * 205.01111 * 3 2 1 6 6 H 1.48501 * 109.47024 * 325.01365 * 3 2 1 7 7 C 1.38813 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99659 * 198.26952 * 7 2 1 9 9 N 1.36934 * 119.99976 * 18.26665 * 7 2 1 10 10 C 1.46935 * 120.64219 * 28.25770 * 9 7 2 11 11 C 1.53628 * 108.53535 * 126.29325 * 10 9 7 12 12 C 1.52995 * 109.27220 * 54.80645 * 11 10 9 13 13 C 1.52984 * 109.63616 * 298.65771 * 12 11 10 14 14 C 1.46933 * 120.64150 * 208.53481 * 9 7 2 15 15 C 1.53254 * 109.36093 * 178.71281 * 12 11 10 16 16 N 1.47152 * 108.40931 * 187.91550 * 15 12 11 17 17 C 1.34786 * 120.98740 * 230.45120 * 16 15 12 18 18 O 1.21282 * 119.99650 * 355.65343 * 17 16 15 19 19 C 1.50698 * 119.99854 * 175.65303 * 17 16 15 20 20 C 1.52999 * 112.85322 * 67.97023 * 19 17 16 21 21 F 1.39898 * 109.47341 * 185.12097 * 20 19 17 22 22 C 1.53784 * 113.61325 * 296.77514 * 19 17 16 23 23 C 1.53954 * 87.02040 * 220.05279 * 22 19 17 24 24 C 1.53783 * 113.61070 * 199.16886 * 19 17 16 25 25 C 1.47150 * 118.02869 * 50.47800 * 16 15 12 26 26 C 1.53298 * 108.37062 * 309.40503 * 25 16 15 27 27 O 1.42894 * 109.54651 * 58.91632 * 12 11 10 28 28 H 0.96991 * 119.99890 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58666 * 246.12594 * 10 9 7 30 30 H 1.08998 * 109.58709 * 6.55641 * 10 9 7 31 31 H 1.09000 * 109.62769 * 294.81186 * 11 10 9 32 32 H 1.08995 * 109.44575 * 174.69664 * 11 10 9 33 33 H 1.08997 * 109.49202 * 301.24249 * 13 12 11 34 34 H 1.09004 * 109.51209 * 181.18296 * 13 12 11 35 35 H 1.08998 * 109.58466 * 353.44642 * 14 9 7 36 36 H 1.09000 * 109.58308 * 113.72292 * 14 9 7 37 37 H 1.09001 * 109.67951 * 307.64899 * 15 12 11 38 38 H 1.09000 * 109.67652 * 68.15333 * 15 12 11 39 39 H 1.09002 * 109.47022 * 305.12641 * 20 19 17 40 40 H 1.09001 * 109.46781 * 65.12191 * 20 19 17 41 41 H 1.08999 * 113.61255 * 334.56442 * 22 19 17 42 42 H 1.08996 * 113.61606 * 105.47239 * 22 19 17 43 43 H 1.08999 * 113.53440 * 270.81079 * 23 22 19 44 44 H 1.08996 * 113.74798 * 139.94224 * 23 22 19 45 45 H 1.08999 * 113.61395 * 254.52578 * 24 19 17 46 46 H 1.08996 * 113.61567 * 25.35100 * 24 19 17 47 47 H 1.09006 * 109.68715 * 69.12326 * 25 16 15 48 48 H 1.08999 * 109.68615 * 189.64757 * 25 16 15 49 49 H 1.09005 * 109.51156 * 172.27435 * 26 25 16 50 50 H 1.08998 * 109.51503 * 292.42450 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1074 1.3947 5 1 3.5965 1.4121 -0.5920 6 1 1.5042 2.6199 -0.8028 7 6 2.0103 -1.2021 0.0005 8 1 3.0495 -1.2255 0.2937 9 7 1.3774 -2.3583 -0.3707 10 6 0.2537 -2.3264 -1.3168 11 6 0.5576 -3.2962 -2.4689 12 6 0.8578 -4.6827 -1.8959 13 6 2.0882 -4.6091 -0.9897 14 6 1.8050 -3.6542 0.1742 15 6 1.1297 -5.6594 -3.0451 16 7 1.2264 -7.0178 -2.4875 17 6 2.2703 -7.8171 -2.7844 18 8 3.1070 -7.4505 -3.5822 19 6 2.3976 -9.1662 -2.1250 20 6 1.3116 -10.1488 -2.5676 21 9 1.4251 -11.3324 -1.8305 22 6 2.5763 -9.0917 -0.5994 23 6 3.5976 -10.2347 -0.7439 24 6 3.8190 -9.7501 -2.1866 25 6 0.1493 -7.4779 -1.5967 26 6 -0.0721 -6.4130 -0.5164 27 8 -0.2655 -5.1416 -1.1412 28 1 -0.4849 0.8400 -0.0004 29 1 -0.6605 -2.6331 -0.8088 30 1 0.1350 -1.3165 -1.7092 31 1 1.4217 -2.9396 -3.0295 32 1 -0.3063 -3.3555 -3.1308 33 1 2.9401 -4.2423 -1.5622 34 1 2.3127 -5.6018 -0.5993 35 1 2.7104 -3.5209 0.7661 36 1 1.0148 -4.0649 0.8026 37 1 0.3126 -5.6155 -3.7652 38 1 2.0664 -5.3963 -3.5365 39 1 0.3301 -9.7067 -2.3964 40 1 1.4311 -10.3686 -3.6285 41 1 3.0154 -8.1549 -0.2565 42 1 1.6830 -9.3712 -0.0410 43 1 3.1518 -11.2273 -0.6803 44 1 4.4746 -10.1229 -0.1064 45 1 3.9273 -10.5604 -2.9076 46 1 4.5981 -8.9936 -2.2797 47 1 -0.7676 -7.6156 -2.1699 48 1 0.4359 -8.4205 -1.1305 49 1 -0.9544 -6.6680 0.0708 50 1 0.8000 -6.3692 0.1359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949193921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = -71.286765 kcal Electronic energy + Delta-G solvation = -32557.461276 eV Core-core repulsion = 28307.947487 eV Total energy + Delta-G solvation = -4249.513790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -48.18774 -41.14937 -39.51134 -37.58157 -36.26465 -34.67259 -33.04593 -31.26953 -30.07011 -29.54419 -28.87809 -27.01086 -26.04820 -24.71432 -24.03131 -23.37305 -22.22965 -21.28035 -19.98753 -19.03642 -18.97191 -17.75631 -16.94158 -16.71392 -16.38101 -15.97551 -15.77769 -15.36232 -15.25163 -14.90739 -14.76789 -14.45481 -14.28403 -13.77370 -13.62288 -13.43540 -13.32313 -13.05234 -12.88393 -12.70463 -12.54227 -12.29072 -11.90930 -11.82378 -11.54892 -11.45693 -11.38930 -11.34838 -11.06738 -10.84266 -10.69819 -10.62991 -10.54609 -10.37342 -10.28962 -10.11956 -9.86543 -9.76507 -9.53356 -9.36222 -8.48007 -8.43605 -6.63146 -5.77015 -3.18619 2.36087 2.70713 3.38207 3.45823 3.48637 3.82553 3.93643 3.99241 4.06285 4.25860 4.45639 4.51426 4.53859 4.71064 4.78334 4.82594 5.01205 5.03187 5.07347 5.19125 5.23699 5.35452 5.37927 5.40951 5.46582 5.52394 5.60950 5.63367 5.65255 5.69351 5.75699 5.82061 5.85536 6.01605 6.09857 6.23539 6.26728 6.30635 6.50654 6.53529 6.64199 6.73516 6.99227 7.19631 7.38962 7.53189 7.72232 7.81994 7.96532 8.47195 9.23763 9.87324 10.45524 11.31395 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.002990 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.443166 B = 9361.757338 C = 9599.812691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.180 3.820 11 C -0.127 4.127 12 C 0.118 3.882 13 C -0.152 4.152 14 C 0.152 3.848 15 C 0.088 3.912 16 N -0.605 5.605 17 C 0.534 3.466 18 O -0.532 6.532 19 C -0.145 4.145 20 C 0.087 3.913 21 F -0.204 7.204 22 C -0.121 4.121 23 C -0.145 4.145 24 C -0.106 4.106 25 C 0.063 3.937 26 C 0.044 3.956 27 O -0.355 6.355 28 H 0.253 0.747 29 H 0.029 0.971 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -21.876 -3.936 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.054 3.946 11 C -0.167 4.167 12 C 0.078 3.922 13 C -0.191 4.191 14 C 0.026 3.974 15 C -0.034 4.034 16 N -0.339 5.339 17 C 0.321 3.679 18 O -0.408 6.408 19 C -0.149 4.149 20 C 0.032 3.968 21 F -0.185 7.185 22 C -0.159 4.159 23 C -0.182 4.182 24 C -0.144 4.144 25 C -0.060 4.060 26 C -0.034 4.034 27 O -0.273 6.273 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.095 0.905 48 H 0.112 0.888 49 H 0.119 0.881 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.627 -21.430 -4.334 21.873 hybrid contribution 0.515 0.647 0.001 0.827 sum 1.142 -20.783 -4.333 21.260 Atomic orbital electron populations 1.70056 1.05235 1.25439 1.53642 1.25033 0.95221 0.98368 1.00885 0.86335 0.79312 0.83883 0.77584 1.21513 1.20435 1.21547 1.19160 0.92921 0.85043 1.41242 0.91863 1.44045 1.37751 1.01231 1.48252 1.20747 0.89327 0.97323 0.87239 1.22278 1.01051 0.92909 1.00426 1.21763 0.86774 0.93829 0.89794 1.22516 0.97315 0.99503 0.99777 1.20763 0.97386 0.86951 0.92316 1.22520 1.03646 0.80454 0.96783 1.48120 1.22204 1.15395 1.48141 1.20035 0.80810 0.85586 0.81430 1.90705 1.41040 1.74838 1.34221 1.22784 0.99344 0.93786 0.98971 1.21724 0.98368 0.80975 0.95734 1.92744 1.97216 1.49087 1.79449 1.23009 1.00600 1.00435 0.91813 1.23064 0.99330 0.99180 0.96622 1.22792 0.93661 1.00426 0.97533 1.22745 0.90803 0.99227 0.93222 1.22892 1.02705 0.83918 0.93903 1.88089 1.38104 1.33759 1.67362 0.93676 0.95330 0.89746 0.91112 0.92356 0.91440 0.93177 0.93158 0.96158 0.90961 0.88395 0.89629 0.89787 0.89119 0.90204 0.88525 0.90962 0.90759 0.88747 0.90466 0.88774 0.88073 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 11.29 55.49 0.63 -25.48 16 2 C 0.00 0.10 4.88 -17.43 -0.09 0.02 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.99 9.57 -15.06 -0.14 -7.14 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.78 2.98 -172.04 -0.51 -15.29 16 10 C 0.18 4.26 5.10 -3.48 -0.02 4.25 16 11 C -0.13 -2.39 5.12 -26.41 -0.14 -2.52 16 12 C 0.12 1.96 0.68 -90.50 -0.06 1.90 16 13 C -0.15 -2.66 4.33 -26.64 -0.12 -2.78 16 14 C 0.15 3.22 6.28 -3.71 -0.02 3.20 16 15 C 0.09 1.27 5.28 -3.55 -0.02 1.25 16 16 N -0.61 -7.41 2.52 -172.30 -0.43 -7.85 16 17 C 0.53 6.83 6.69 -10.98 -0.07 6.76 16 18 O -0.53 -8.76 15.70 5.56 0.09 -8.67 16 19 C -0.15 -1.38 0.70 -154.85 -0.11 -1.49 16 20 C 0.09 0.67 6.62 37.16 0.25 0.92 16 21 F -0.20 -1.75 14.58 2.25 0.03 -1.71 16 22 C -0.12 -1.04 5.75 -25.83 -0.15 -1.19 16 23 C -0.14 -1.17 7.56 -25.82 -0.20 -1.37 16 24 C -0.11 -1.01 6.83 -25.91 -0.18 -1.19 16 25 C 0.06 0.61 5.14 -3.53 -0.02 0.59 16 26 C 0.04 0.52 6.60 37.31 0.25 0.77 16 27 O -0.35 -5.82 9.00 -35.23 -0.32 -6.14 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.03 0.73 7.82 -51.93 -0.41 0.33 16 30 H 0.08 2.24 6.11 -51.93 -0.32 1.92 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.05 0.79 6.16 -51.93 -0.32 0.47 16 35 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 36 H 0.02 0.44 7.83 -51.93 -0.41 0.04 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.54 7.11 -51.93 -0.37 1.17 16 39 H 0.09 0.54 5.77 -51.93 -0.30 0.24 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.08 0.58 7.16 -51.93 -0.37 0.21 16 43 H 0.10 0.76 6.38 -51.93 -0.33 0.43 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.66 8.10 -51.93 -0.42 0.23 16 46 H 0.09 1.04 7.76 -51.93 -0.40 0.63 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.70 3.42 -51.93 -0.18 0.53 16 49 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.06 0.75 6.29 -51.93 -0.33 0.42 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -31.83 371.39 -8.69 -40.52 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.91 Total: 0.41 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.83 Total: 1.96 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.32 Total: -48.62 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.23 Total: -14.81 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.03 Total: -1.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.83 -8.69 -40.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949193921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.766 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds