Wall clock time and date at job start Sat Apr 11 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48509 * 109.47230 * 270.00599 * 3 2 1 5 5 H 1.48500 * 109.47530 * 30.00435 * 3 2 1 6 6 H 1.48502 * 109.47022 * 150.00740 * 3 2 1 7 7 C 1.38813 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00220 * 163.53265 * 7 2 1 9 9 N 1.36938 * 119.99604 * 343.53910 * 7 2 1 10 10 C 1.47155 * 120.98874 * 153.36874 * 9 7 2 11 11 C 1.53303 * 108.37531 * 129.37711 * 10 9 7 12 12 O 1.42963 * 109.22315 * 52.35175 * 11 10 9 13 13 C 1.42895 * 114.21055 * 297.50441 * 12 11 10 14 14 C 1.52990 * 109.55971 * 302.52873 * 13 12 11 15 15 C 1.53203 * 109.34774 * 300.95813 * 14 13 12 16 16 N 1.46930 * 108.77374 * 305.42890 * 15 14 13 17 17 C 1.34781 * 120.64238 * 233.64692 * 16 15 14 18 18 O 1.21279 * 119.99752 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99924 * 180.02562 * 17 16 15 20 20 H 1.09004 * 110.02254 * 301.39542 * 19 17 16 21 21 C 1.54269 * 110.03503 * 62.83647 * 19 17 16 22 22 C 1.55024 * 104.28299 * 142.79829 * 21 19 17 23 23 C 1.54894 * 102.68511 * 322.23574 * 22 21 19 24 24 H 1.08992 * 110.48443 * 279.02874 * 23 22 21 25 25 F 1.39905 * 110.48528 * 156.51315 * 23 22 21 26 26 C 1.53873 * 110.03135 * 180.02562 * 19 17 16 27 27 C 1.46934 * 118.71755 * 53.92751 * 16 15 14 28 28 C 1.53002 * 109.54717 * 182.23107 * 13 12 11 29 29 C 1.47157 * 120.98599 * 333.33867 * 9 7 2 30 30 H 0.96998 * 120.00201 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.68060 * 249.10420 * 10 9 7 32 32 H 1.09000 * 109.68294 * 9.62153 * 10 9 7 33 33 H 1.08996 * 109.50926 * 172.27298 * 11 10 9 34 34 H 1.08999 * 109.51319 * 292.43023 * 11 10 9 35 35 H 1.09004 * 109.49076 * 180.99903 * 14 13 12 36 36 H 1.08996 * 109.51318 * 60.93347 * 14 13 12 37 37 H 1.09000 * 109.58445 * 185.63900 * 15 14 13 38 38 H 1.08994 * 109.70060 * 65.28344 * 15 14 13 39 39 H 1.09003 * 110.48584 * 261.57597 * 21 19 17 40 40 H 1.09006 * 110.48424 * 24.21245 * 21 19 17 41 41 H 1.08996 * 110.88033 * 203.90350 * 22 21 19 42 42 H 1.09005 * 110.69792 * 80.48568 * 22 21 19 43 43 H 1.08998 * 110.03639 * 121.43200 * 26 19 17 44 44 H 1.09000 * 110.03139 * 359.97438 * 26 19 17 45 45 H 1.09001 * 109.58418 * 65.84752 * 27 16 15 46 46 H 1.08998 * 109.58789 * 186.27611 * 27 16 15 47 47 H 1.09003 * 109.49027 * 179.00192 * 28 13 12 48 48 H 1.08997 * 109.48574 * 299.04571 * 28 13 12 49 49 H 1.09002 * 109.67784 * 110.77411 * 29 9 7 50 50 H 1.09001 * 109.70655 * 350.24836 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0571 -1.2212 -0.2657 9 7 1.3677 -2.3639 0.3350 10 6 1.8299 -3.6619 -0.1817 11 6 1.9766 -4.6278 0.9997 12 8 0.7603 -4.6410 1.7507 13 6 0.4186 -3.3825 2.3350 14 6 1.5575 -2.9128 3.2420 15 6 1.7991 -3.9578 4.3360 16 7 0.5327 -4.2095 5.0374 17 6 0.4570 -4.1010 6.3787 18 8 1.4400 -3.7926 7.0185 19 6 -0.8491 -4.3630 7.0832 20 1 -1.6175 -3.6869 6.7084 21 6 -1.2817 -5.8280 6.8670 22 6 -1.9177 -6.2424 8.2186 23 6 -1.0099 -5.5325 9.2536 24 1 -0.1002 -6.1087 9.4217 25 9 -1.6965 -5.3412 10.4574 26 6 -0.6765 -4.1746 8.6006 27 6 -0.6480 -4.5878 4.2488 28 6 -0.8643 -3.5306 3.1555 29 6 0.1947 -2.3514 1.2235 30 1 -0.4850 0.8400 0.0004 31 1 1.1009 -4.0558 -0.8898 32 1 2.7929 -3.5379 -0.6770 33 1 2.1850 -5.6304 0.6264 34 1 2.7958 -4.2990 1.6392 35 1 1.2883 -1.9615 3.7009 36 1 2.4652 -2.7879 2.6516 37 1 2.5398 -3.5828 5.0423 38 1 2.1583 -4.8837 3.8869 39 1 -2.0149 -5.8945 6.0631 40 1 -0.4160 -6.4529 6.6476 41 1 -1.8807 -7.3238 8.3500 42 1 -2.9427 -5.8784 8.2898 43 1 -1.3617 -3.4079 8.9620 44 1 0.3521 -3.8941 8.8274 45 1 -0.4841 -5.5631 3.7905 46 1 -1.5229 -4.6290 4.8977 47 1 -1.1144 -2.5743 3.6152 48 1 -1.6790 -3.8445 2.5031 49 1 -0.6986 -2.6119 0.6558 50 1 0.0755 -1.3602 1.6610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949455227.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:50 Heat of formation + Delta-G solvation = -126.810698 kcal Electronic energy + Delta-G solvation = -31914.372329 eV Core-core repulsion = 27662.450841 eV Total energy + Delta-G solvation = -4251.921488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.56278 -41.80348 -40.54179 -37.88807 -37.38613 -36.16419 -33.75230 -33.19319 -32.39429 -30.17041 -29.76201 -29.20937 -28.19947 -25.44406 -24.75527 -24.36117 -22.97583 -21.93241 -21.79189 -20.44105 -19.74340 -18.81547 -18.68268 -17.35833 -17.24148 -17.16532 -16.82243 -16.36758 -16.16270 -15.93687 -15.80855 -15.56107 -15.35457 -15.28838 -14.86998 -14.61500 -14.56164 -14.43742 -14.15028 -13.73335 -13.43093 -13.21052 -13.13044 -12.95093 -12.77639 -12.71215 -12.70221 -12.40688 -12.30206 -12.28222 -12.18119 -12.12506 -11.77440 -11.72065 -11.67640 -11.59385 -11.37649 -10.99936 -10.74196 -10.67721 -10.43450 -9.63749 -8.68447 -7.90525 -5.36495 1.42062 1.44710 1.52999 1.58955 1.98376 2.45618 2.91047 3.22903 3.29706 3.35443 3.52088 3.56304 3.66189 3.85140 3.94409 4.01307 4.09050 4.15961 4.20158 4.31623 4.32487 4.37831 4.39336 4.45504 4.48723 4.53390 4.59969 4.69168 4.73205 4.76207 4.82637 4.91787 4.93856 4.97749 5.01243 5.06289 5.10044 5.14747 5.16009 5.21821 5.29639 5.33630 5.35672 5.53619 5.58253 5.63714 6.30228 6.44616 6.44946 7.08262 7.14018 7.77657 8.30629 9.14212 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.002925 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.335054 B = 9570.789367 C =10178.138401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.961 3.039 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.611 5.611 10 C 0.104 3.896 11 C 0.053 3.947 12 O -0.376 6.376 13 C 0.107 3.893 14 C -0.134 4.134 15 C 0.127 3.873 16 N -0.602 5.602 17 C 0.515 3.485 18 O -0.587 6.587 19 C -0.106 4.106 20 H 0.124 0.876 21 C -0.109 4.109 22 C -0.137 4.137 23 C 0.079 3.921 24 H 0.093 0.907 25 F -0.225 7.225 26 C -0.144 4.144 27 C 0.116 3.884 28 C -0.117 4.117 29 C 0.167 3.833 30 H 0.250 0.750 31 H 0.016 0.984 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.121 0.879 47 H 0.073 0.927 48 H 0.090 0.910 49 H -0.003 1.003 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.824 -15.198 13.497 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.243 4.243 3 Si 0.789 3.211 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.335 5.335 10 C -0.022 4.022 11 C -0.025 4.025 12 O -0.295 6.295 13 C 0.066 3.934 14 C -0.173 4.173 15 C 0.004 3.996 16 N -0.333 5.333 17 C 0.305 3.695 18 O -0.468 6.468 19 C -0.127 4.127 20 H 0.142 0.858 21 C -0.147 4.147 22 C -0.175 4.175 23 C 0.043 3.957 24 H 0.111 0.889 25 F -0.206 7.206 26 C -0.182 4.182 27 C -0.005 4.005 28 C -0.156 4.156 29 C 0.041 3.959 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.138 0.862 47 H 0.092 0.908 48 H 0.109 0.891 49 H 0.015 0.985 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.521 -15.057 13.845 20.948 hybrid contribution 0.768 1.947 -0.623 2.184 sum -3.752 -13.110 13.222 18.994 Atomic orbital electron populations 1.70157 1.06461 1.25784 1.55455 1.25709 0.96031 1.01188 1.01376 0.85379 0.78150 0.79984 0.77582 1.21132 1.21933 1.19717 1.19452 0.92631 0.85663 1.41160 0.91495 1.44309 1.33712 1.02093 1.53408 1.21786 0.98247 0.86727 0.95405 1.23032 0.86743 1.00306 0.92370 1.87770 1.42094 1.31107 1.68572 1.21926 0.94674 0.84675 0.92151 1.22141 1.00264 0.98153 0.96751 1.21364 0.86207 0.98585 0.93403 1.48162 1.11804 1.67521 1.05847 1.21122 0.91173 0.75496 0.81749 1.90636 1.40012 1.50267 1.65927 1.21897 0.94365 1.01387 0.95070 0.85849 1.22494 1.01782 0.91677 0.98745 1.23092 0.99762 1.01906 0.92735 1.22643 0.95610 0.97176 0.80288 0.88903 1.92777 1.82083 1.96504 1.49245 1.22702 1.04094 0.97824 0.93600 1.22107 0.87730 0.97995 0.92713 1.21949 0.95879 1.00531 0.97204 1.21173 0.87675 0.97340 0.89670 0.94096 0.96607 0.91623 0.86532 0.93224 0.93258 0.91293 0.90924 0.90436 0.87000 0.90838 0.88523 0.88877 0.89564 0.90607 0.89288 0.86162 0.90840 0.89144 0.98509 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 11.14 21.65 0.24 -53.81 16 2 C -0.05 -2.61 4.95 84.86 0.42 -2.19 16 3 Si 0.96 44.51 29.58 68.60 2.03 46.54 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.26 -13.91 9.65 84.03 0.81 -13.10 16 8 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 9 N -0.61 -29.70 2.55 -697.59 -1.78 -31.48 16 10 C 0.10 4.12 6.74 86.36 0.58 4.70 16 11 C 0.05 1.67 6.60 72.08 0.48 2.14 16 12 O -0.38 -12.27 9.00 -148.98 -1.34 -13.61 16 13 C 0.11 3.69 0.68 -10.71 -0.01 3.68 16 14 C -0.13 -4.66 4.33 30.66 0.13 -4.53 16 15 C 0.13 3.70 6.19 86.37 0.53 4.23 16 16 N -0.60 -14.83 2.97 -818.03 -2.43 -17.26 16 17 C 0.51 13.04 6.93 87.65 0.61 13.65 16 18 O -0.59 -19.77 14.62 -3.03 -0.04 -19.81 16 19 C -0.11 -1.77 2.41 -10.82 -0.03 -1.80 16 20 H 0.12 1.65 7.65 -2.38 -0.02 1.63 16 21 C -0.11 -1.19 5.15 31.72 0.16 -1.03 16 22 C -0.14 -1.43 6.71 31.93 0.21 -1.22 16 23 C 0.08 1.26 4.65 31.69 0.15 1.41 16 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 25 F -0.23 -4.58 17.17 44.97 0.77 -3.81 16 26 C -0.14 -2.70 6.21 31.34 0.19 -2.50 16 27 C 0.12 2.26 5.44 86.51 0.47 2.73 16 28 C -0.12 -3.13 5.12 30.80 0.16 -2.98 16 29 C 0.17 7.73 4.09 86.34 0.35 8.09 16 30 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 2.48 7.96 -2.39 -0.02 2.47 16 33 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.05 1.55 6.29 -2.39 -0.02 1.54 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 2.66 6.16 -2.39 -0.01 2.64 16 37 H 0.07 2.31 7.01 -2.39 -0.02 2.30 16 38 H 0.08 2.11 7.83 -2.39 -0.02 2.09 16 39 H 0.11 0.70 6.68 -2.39 -0.02 0.69 16 40 H 0.07 0.91 7.85 -2.38 -0.02 0.89 16 41 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 44 H 0.08 1.84 6.39 -2.39 -0.02 1.83 16 45 H 0.09 1.64 7.82 -2.39 -0.02 1.62 16 46 H 0.12 1.48 4.33 -2.39 -0.01 1.47 16 47 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 50 H 0.06 3.08 6.16 -2.39 -0.01 3.07 16 Total: -1.00 -69.35 373.91 3.62 -65.73 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.94 Total: 16.23 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 5.23 Total: 11.28 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -3.96 Total: -102.55 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.38 Total: -33.43 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.77 Total: -3.81 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.35 3.62 -65.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949455227.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.081 kcal (2) G-P(sol) polarization free energy of solvation -69.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds