Wall clock time and date at job start Sat Apr 11 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47182 * 269.99728 * 3 2 1 5 5 H 1.48501 * 109.47285 * 29.99458 * 3 2 1 6 6 H 1.48496 * 109.47551 * 149.99842 * 3 2 1 7 7 C 1.38819 * 120.00457 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00048 * 195.46222 * 7 2 1 9 9 N 1.36934 * 119.99414 * 15.46284 * 7 2 1 10 10 C 1.47158 * 120.98783 * 205.60931 * 9 7 2 11 11 C 1.53295 * 108.40365 * 230.61115 * 10 9 7 12 12 O 1.42968 * 109.22453 * 307.61983 * 11 10 9 13 13 C 1.42895 * 114.20969 * 62.49634 * 12 11 10 14 14 C 1.52995 * 109.54391 * 177.77818 * 13 12 11 15 15 C 1.53197 * 109.34113 * 300.96892 * 14 13 12 16 16 N 1.46931 * 108.76939 * 305.41381 * 15 14 13 17 17 C 1.34780 * 120.63755 * 233.65273 * 16 15 14 18 18 O 1.21284 * 119.99727 * 185.14351 * 17 16 15 19 19 C 1.50700 * 120.00190 * 5.14316 * 17 16 15 20 20 H 1.09002 * 110.43381 * 37.03399 * 19 17 16 21 21 C 1.54268 * 110.48520 * 274.49675 * 19 17 16 22 22 C 1.53870 * 106.59958 * 217.70880 * 21 19 17 23 23 C 1.54268 * 106.59962 * 0.02562 * 22 21 19 24 24 H 1.08995 * 110.48821 * 142.41471 * 23 22 21 25 25 F 1.39894 * 110.48315 * 264.93073 * 23 22 21 26 26 C 1.54887 * 104.19376 * 23.60738 * 23 22 21 27 27 C 1.46924 * 118.71974 * 53.67339 * 16 15 14 28 28 C 1.52984 * 109.56080 * 57.47787 * 13 12 11 29 29 C 1.47233 * 121.04156 * 25.63301 * 9 7 2 30 30 H 0.96994 * 120.00026 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.68832 * 110.86445 * 10 9 7 32 32 H 1.09007 * 109.68407 * 350.34975 * 10 9 7 33 33 H 1.08994 * 109.51252 * 67.55014 * 11 10 9 34 34 H 1.09001 * 109.51220 * 187.64905 * 11 10 9 35 35 H 1.08991 * 109.49213 * 60.92982 * 14 13 12 36 36 H 1.09002 * 109.49115 * 181.00791 * 14 13 12 37 37 H 1.08998 * 109.58525 * 185.62877 * 15 14 13 38 38 H 1.09000 * 109.70354 * 65.27104 * 15 14 13 39 39 H 1.09004 * 110.03249 * 336.99862 * 21 19 17 40 40 H 1.09000 * 110.03251 * 98.42272 * 21 19 17 41 41 H 1.09002 * 110.02957 * 119.28302 * 22 21 19 42 42 H 1.08993 * 110.03520 * 240.71578 * 22 21 19 43 43 H 1.09006 * 110.75769 * 203.74546 * 26 23 22 44 44 H 1.08997 * 110.76054 * 80.37849 * 26 23 22 45 45 H 1.09005 * 109.58227 * 186.55228 * 27 16 15 46 46 H 1.08996 * 109.58593 * 66.13408 * 27 16 15 47 47 H 1.09002 * 109.49061 * 178.99930 * 28 13 12 48 48 H 1.08996 * 109.49542 * 299.06963 * 28 13 12 49 49 H 1.08995 * 109.66233 * 9.77973 * 29 9 7 50 50 H 1.09006 * 109.69526 * 249.27487 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2022 0.0005 8 1 3.0611 -1.2189 0.2499 9 7 1.3629 -2.3667 -0.3151 10 6 1.8461 -3.6626 0.1877 11 6 1.9610 -4.6289 -0.9968 12 8 0.7223 -4.6485 -1.7103 13 6 0.3571 -3.3921 -2.2849 14 6 -0.9496 -3.5469 -3.0655 15 6 -0.7633 -4.5990 -4.1633 16 7 0.3923 -4.2217 -4.9886 17 6 0.2749 -4.1152 -6.3270 18 8 1.2554 -3.8948 -7.0061 19 6 -1.0745 -4.2700 -6.9799 20 1 -1.8516 -3.8270 -6.3571 21 6 -1.3784 -5.7591 -7.2447 22 6 -2.1086 -5.8249 -8.5975 23 6 -2.2224 -4.3735 -9.1079 24 1 -2.0867 -4.3375 -10.1888 25 9 -3.4592 -3.8250 -8.7522 26 6 -1.0714 -3.6268 -8.3891 27 6 1.6782 -3.9631 -4.3267 28 6 1.4655 -2.9181 -3.2268 29 6 0.1627 -2.3609 -1.1680 30 1 -0.4850 0.8400 -0.0004 31 1 1.1408 -4.0592 0.9180 32 1 2.8234 -3.5345 0.6532 33 1 2.7588 -4.2970 -1.6612 34 1 2.1862 -5.6301 -0.6293 35 1 -1.7424 -3.8643 -2.3883 36 1 -1.2180 -2.5924 -3.5183 37 1 -1.6579 -4.6412 -4.7846 38 1 -0.5863 -5.5748 -3.7109 39 1 -0.4492 -6.3269 -7.2939 40 1 -2.0174 -6.1558 -6.4558 41 1 -1.5338 -6.4245 -9.3033 42 1 -3.1020 -6.2534 -8.4652 43 1 -1.2830 -2.5593 -8.3267 44 1 -0.1215 -3.8045 -8.8932 45 1 2.3950 -3.5853 -5.0558 46 1 2.0544 -4.8862 -3.8859 47 1 1.1779 -1.9685 -3.6780 48 1 2.3901 -2.7886 -2.6644 49 1 0.0262 -1.3706 -1.6024 50 1 -0.7119 -2.6245 -0.5732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949455230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:04 Heat of formation + Delta-G solvation = -127.435014 kcal Electronic energy + Delta-G solvation = -31968.002271 eV Core-core repulsion = 27716.053710 eV Total energy + Delta-G solvation = -4251.948561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -48.54319 -41.75841 -40.50154 -37.87326 -37.30615 -36.17633 -33.75761 -33.19099 -32.44356 -30.21888 -29.78474 -29.38183 -28.23601 -25.45016 -24.74177 -24.46238 -23.00573 -21.94532 -21.55226 -20.46957 -19.82854 -18.83019 -18.63167 -17.49630 -17.21945 -17.12248 -16.56374 -16.43288 -16.17660 -15.92227 -15.76122 -15.64209 -15.35887 -15.29225 -15.04155 -14.62202 -14.61265 -14.42164 -14.10905 -13.85130 -13.46344 -13.24275 -13.18688 -12.93928 -12.80368 -12.72642 -12.50537 -12.39383 -12.28217 -12.23101 -12.18809 -12.09638 -11.77585 -11.72139 -11.67799 -11.65288 -11.51123 -11.04666 -10.75159 -10.68061 -10.44840 -9.65971 -8.70389 -7.89765 -5.36282 1.42841 1.44884 1.52505 1.54749 1.97620 2.45488 2.89329 3.21932 3.24546 3.36438 3.51417 3.56782 3.75845 3.84982 3.92020 3.99770 4.05056 4.13747 4.25467 4.29355 4.31602 4.36181 4.37444 4.44265 4.47469 4.52618 4.56898 4.65428 4.68793 4.75188 4.81268 4.85849 4.90385 4.95405 4.99183 5.04604 5.07978 5.11783 5.15033 5.21169 5.28656 5.33142 5.37842 5.51859 5.56648 5.63510 6.29530 6.41826 6.43912 7.07746 7.11630 7.77101 8.29845 9.14668 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.003098 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.089578 B = 9035.129142 C = 9706.215669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.963 3.037 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.104 3.896 11 C 0.053 3.947 12 O -0.378 6.378 13 C 0.107 3.893 14 C -0.116 4.116 15 C 0.119 3.881 16 N -0.605 5.605 17 C 0.520 3.480 18 O -0.584 6.584 19 C -0.116 4.116 20 H 0.110 0.890 21 C -0.108 4.108 22 C -0.141 4.141 23 C 0.083 3.917 24 H 0.113 0.887 25 F -0.224 7.224 26 C -0.134 4.134 27 C 0.128 3.872 28 C -0.134 4.134 29 C 0.165 3.835 30 H 0.250 0.750 31 H 0.016 0.984 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.063 0.937 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 -14.593 -15.827 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.336 5.336 10 C -0.021 4.021 11 C -0.025 4.025 12 O -0.297 6.297 13 C 0.066 3.934 14 C -0.155 4.155 15 C -0.003 4.003 16 N -0.336 5.336 17 C 0.310 3.690 18 O -0.465 6.465 19 C -0.137 4.137 20 H 0.128 0.872 21 C -0.146 4.146 22 C -0.179 4.179 23 C 0.047 3.953 24 H 0.131 0.869 25 F -0.205 7.205 26 C -0.172 4.172 27 C 0.005 3.995 28 C -0.173 4.173 29 C 0.040 3.960 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -4.195 -14.505 -16.136 22.098 hybrid contribution 0.588 1.890 0.888 2.170 sum -3.607 -12.614 -15.248 20.115 Atomic orbital electron populations 1.70151 1.06462 1.25723 1.55704 1.25712 0.96077 1.01190 1.01473 0.85324 0.78191 0.79873 0.77450 1.21471 1.22158 1.19307 1.19501 0.92421 0.85466 1.41331 0.91281 1.44340 1.31234 1.02105 1.55891 1.21782 0.98239 0.86724 0.95393 1.23042 0.86211 1.00356 0.92901 1.87773 1.40170 1.31185 1.70586 1.21913 0.94482 0.84752 0.92239 1.21853 0.95791 1.00424 0.97426 1.21849 0.88384 0.98052 0.91970 1.48221 1.11744 1.67533 1.06129 1.20999 0.91498 0.74992 0.81525 1.90638 1.41218 1.51267 1.63364 1.22279 0.93638 1.00034 0.97713 0.87198 1.22121 1.01325 0.92192 0.98928 1.22755 1.02905 0.95177 0.97038 1.22517 0.78420 0.93446 1.00942 0.86911 1.92797 1.45997 1.87603 1.94085 1.23027 0.99806 1.00190 0.94178 1.21371 0.85633 0.98552 0.93946 1.22143 1.00475 0.98107 0.96567 1.21225 0.87299 0.97541 0.89982 0.94126 0.96591 0.91494 0.93160 0.86533 0.89235 0.90908 0.86955 0.89464 0.91374 0.88797 0.88204 0.88946 0.90785 0.88845 0.90725 0.90530 0.93237 0.91083 0.91888 0.98596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.58 11.01 21.65 0.24 -54.34 16 2 C -0.05 -2.72 4.99 84.86 0.42 -2.29 16 3 Si 0.96 44.81 29.58 68.60 2.03 46.84 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.26 -13.89 9.67 84.04 0.81 -13.08 16 8 H 0.07 3.63 7.87 -2.91 -0.02 3.61 16 9 N -0.61 -30.08 2.56 -697.39 -1.79 -31.87 16 10 C 0.10 4.18 6.73 86.35 0.58 4.76 16 11 C 0.05 1.69 6.60 72.08 0.48 2.16 16 12 O -0.38 -12.82 9.00 -148.98 -1.34 -14.16 16 13 C 0.11 3.85 0.68 -10.72 -0.01 3.84 16 14 C -0.12 -3.36 5.10 30.66 0.16 -3.20 16 15 C 0.12 2.65 6.04 86.36 0.52 3.17 16 16 N -0.60 -16.10 2.97 -818.88 -2.43 -18.53 16 17 C 0.52 13.98 6.76 87.66 0.59 14.58 16 18 O -0.58 -19.86 15.19 -3.04 -0.05 -19.91 16 19 C -0.12 -2.22 2.25 -10.46 -0.02 -2.25 16 20 H 0.11 1.96 6.67 -2.39 -0.02 1.94 16 21 C -0.11 -1.49 6.15 31.32 0.19 -1.30 16 22 C -0.14 -1.54 6.61 31.32 0.21 -1.34 16 23 C 0.08 1.17 4.66 31.67 0.15 1.32 16 24 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 25 F -0.22 -4.30 17.17 44.97 0.77 -3.53 16 26 C -0.13 -2.50 5.93 31.89 0.19 -2.31 16 27 C 0.13 3.86 6.18 86.36 0.53 4.39 16 28 C -0.13 -4.79 4.33 30.65 0.13 -4.66 16 29 C 0.17 7.81 4.10 86.32 0.35 8.17 16 30 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 2.55 7.96 -2.38 -0.02 2.53 16 33 H 0.05 1.60 6.29 -2.39 -0.02 1.59 16 34 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.11 1.82 5.16 -2.39 -0.01 1.80 16 38 H 0.09 1.85 7.83 -2.39 -0.02 1.83 16 39 H 0.07 1.05 7.83 -2.38 -0.02 1.03 16 40 H 0.09 1.00 7.84 -2.39 -0.02 0.98 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 43 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.09 1.92 7.26 -2.39 -0.02 1.90 16 45 H 0.07 2.43 7.04 -2.38 -0.02 2.41 16 46 H 0.08 2.18 7.83 -2.39 -0.02 2.16 16 47 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.07 2.78 6.16 -2.39 -0.01 2.77 16 49 H 0.06 3.39 6.04 -2.39 -0.01 3.38 16 50 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 Total: -1.00 -68.69 377.06 3.66 -65.04 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.93 Total: 18.48 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.29 Total: 11.96 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -3.98 Total: -104.74 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.39 Total: -34.06 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.77 Total: -3.53 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.69 3.66 -65.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949455230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.395 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds