Wall clock time and date at job start Sat Apr 11 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99757 * 2 1 4 4 H 1.48500 * 109.46869 * 239.99525 * 3 2 1 5 5 H 1.48500 * 109.47383 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47103 * 120.00003 * 3 2 1 7 7 C 1.38814 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00047 * 198.74130 * 7 2 1 9 9 N 1.36933 * 119.99686 * 18.74642 * 7 2 1 10 10 C 1.47168 * 121.07908 * 204.81703 * 9 7 2 11 11 C 1.53278 * 108.57853 * 231.21852 * 10 9 7 12 12 O 1.43120 * 109.21899 * 307.00189 * 11 10 9 13 13 C 1.41880 * 114.36774 * 60.89603 * 12 11 10 14 14 C 1.54378 * 110.70658 * 63.26540 * 13 12 11 15 15 C 1.54461 * 102.87040 * 83.68631 * 14 13 12 16 16 N 1.47077 * 107.29626 * 21.50052 * 15 14 13 17 17 C 1.34774 * 125.63088 * 180.94514 * 16 15 14 18 18 O 1.21280 * 119.99815 * 184.22656 * 17 16 15 19 19 C 1.50697 * 120.00101 * 3.95675 * 17 16 15 20 20 C 1.53000 * 109.47262 * 214.10415 * 19 17 16 21 21 C 1.52999 * 109.47143 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.47185 * 59.99962 * 21 20 19 23 23 F 1.39900 * 109.46969 * 60.00034 * 22 21 20 24 24 C 1.53000 * 109.47111 * 300.00057 * 22 21 20 25 25 C 1.52999 * 109.47143 * 59.99917 * 24 22 21 26 26 C 1.47579 * 108.73942 * 1.21559 * 16 15 14 27 27 C 1.47337 * 121.08587 * 24.81422 * 9 7 2 28 28 H 0.96997 * 119.99972 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.61798 * 111.49172 * 10 9 7 30 30 H 1.08999 * 109.76515 * 351.03537 * 10 9 7 31 31 H 1.08999 * 109.51212 * 187.07348 * 11 10 9 32 32 H 1.09011 * 109.51381 * 66.92256 * 11 10 9 33 33 H 1.09005 * 110.73418 * 325.34133 * 14 13 12 34 34 H 1.09003 * 110.73656 * 202.03409 * 14 13 12 35 35 H 1.09001 * 109.87608 * 262.07385 * 15 14 13 36 36 H 1.08997 * 109.87484 * 140.92495 * 15 14 13 37 37 H 1.09001 * 109.47023 * 334.10712 * 19 17 16 38 38 H 1.09001 * 109.47344 * 300.00100 * 20 19 17 39 39 H 1.08996 * 109.46997 * 59.99884 * 20 19 17 40 40 H 1.09001 * 109.47005 * 300.00213 * 21 20 19 41 41 H 1.08992 * 109.47065 * 180.02562 * 21 20 19 42 42 H 1.09005 * 109.47243 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47344 * 299.99912 * 24 22 21 44 44 H 1.09005 * 109.47182 * 179.97438 * 24 22 21 45 45 H 1.09005 * 109.46851 * 179.97438 * 25 24 22 46 46 H 1.09005 * 109.47050 * 60.00279 * 25 24 22 47 47 H 1.09001 * 110.38144 * 95.28292 * 26 16 15 48 48 H 1.09003 * 110.37350 * 217.62972 * 26 16 15 49 49 H 1.09001 * 109.67491 * 11.10433 * 27 9 7 50 50 H 1.09003 * 109.67906 * 250.55997 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2022 0.0005 8 1 3.0473 -1.2268 0.3010 9 7 1.3801 -2.3567 -0.3801 10 6 1.8476 -3.6692 0.0938 11 6 2.0264 -4.5907 -1.1179 12 8 0.8173 -4.6017 -1.8838 13 6 0.4375 -3.3345 -2.3964 14 6 1.4957 -2.8079 -3.3895 15 6 1.0996 -3.4991 -4.7128 16 7 -0.3139 -3.8884 -4.5968 17 6 -1.0299 -4.5352 -5.5377 18 8 -2.2130 -4.7392 -5.3658 19 6 -0.3618 -4.9997 -6.8061 20 6 -1.3504 -4.8997 -7.9695 21 6 -0.6722 -5.3719 -9.2571 22 6 -0.2227 -6.8252 -9.0934 23 9 -1.3358 -7.6307 -8.8302 24 6 0.7659 -6.9252 -7.9300 25 6 0.0877 -6.4530 -6.6424 26 6 -0.8207 -3.4480 -3.2826 27 6 0.2118 -2.3255 -1.2773 28 1 -0.4850 0.8400 0.0004 29 1 1.1104 -4.0969 0.7732 30 1 2.8002 -3.5563 0.6114 31 1 2.2506 -5.6013 -0.7768 32 1 2.8458 -4.2241 -1.7364 33 1 2.4972 -3.1086 -3.0817 34 1 1.4294 -1.7241 -3.4853 35 1 1.7164 -4.3843 -4.8675 36 1 1.2262 -2.8065 -5.5449 37 1 0.5053 -4.3718 -7.0110 38 1 -2.2174 -5.5276 -7.7646 39 1 -1.6709 -3.8644 -8.0858 40 1 0.1951 -4.7442 -9.4622 41 1 -1.3763 -5.3001 -10.0860 42 1 0.2601 -7.1617 -10.0109 43 1 1.6332 -6.2976 -8.1351 44 1 1.0858 -7.9607 -7.8131 45 1 0.7920 -6.5248 -5.8135 46 1 -0.7795 -7.0807 -6.4372 47 1 -1.3141 -2.4801 -3.3709 48 1 -1.5073 -4.1889 -2.8729 49 1 0.1005 -1.3270 -1.7002 50 1 -0.6864 -2.5907 -0.7197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972533139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:24 Heat of formation + Delta-G solvation = -113.034882 kcal Electronic energy + Delta-G solvation = -31685.423439 eV Core-core repulsion = 27434.099315 eV Total energy + Delta-G solvation = -4251.324124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -47.84225 -40.42958 -39.13222 -37.17246 -36.04705 -34.49404 -31.86293 -31.32388 -31.18549 -30.57621 -29.55049 -27.49059 -25.88549 -23.92561 -23.33138 -23.08932 -22.46365 -21.34547 -20.08465 -19.19253 -18.62018 -17.24131 -17.06267 -16.71629 -16.17033 -15.69352 -15.58815 -15.37320 -15.08402 -14.93871 -14.42206 -14.30633 -13.94153 -13.67070 -13.48759 -13.40034 -13.22616 -12.94481 -12.76430 -12.57101 -12.51687 -12.30487 -12.26350 -12.09573 -11.89130 -11.39836 -11.36848 -11.11919 -10.96624 -10.91535 -10.87710 -10.76016 -10.68561 -10.35369 -10.35022 -10.31745 -9.97636 -9.59841 -9.53798 -9.09127 -8.57487 -8.43003 -6.81820 -5.89776 -3.30761 2.74737 3.10399 3.30900 3.37674 3.38193 4.12652 4.20758 4.21674 4.36068 4.38656 4.48436 4.68700 4.79008 4.84607 4.86791 4.99715 5.06482 5.10709 5.13584 5.24562 5.30183 5.38586 5.44290 5.51272 5.55051 5.61966 5.65835 5.68065 5.77107 5.83221 5.85095 5.89295 5.96392 6.00026 6.04671 6.12409 6.17572 6.25484 6.28728 6.42630 6.48303 6.61070 6.74797 7.00518 7.38030 7.66248 7.70341 7.89022 8.25892 8.31698 9.04923 9.68679 10.25919 11.18758 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020735 B = 0.002771 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.053644 B =10100.931017 C =10497.934005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.374 6.374 13 C 0.086 3.914 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.611 5.611 17 C 0.532 3.468 18 O -0.543 6.543 19 C -0.101 4.101 20 C -0.105 4.105 21 C -0.144 4.144 22 C 0.090 3.910 23 F -0.211 7.211 24 C -0.142 4.142 25 C -0.108 4.108 26 C 0.123 3.877 27 C 0.163 3.837 28 H 0.256 0.744 29 H 0.026 0.974 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -10.676 -17.241 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.316 5.316 10 C -0.017 4.017 11 C -0.031 4.031 12 O -0.293 6.293 13 C 0.044 3.956 14 C -0.182 4.182 15 C -0.019 4.019 16 N -0.344 5.344 17 C 0.321 3.679 18 O -0.421 6.421 19 C -0.122 4.122 20 C -0.143 4.143 21 C -0.182 4.182 22 C 0.054 3.946 23 F -0.192 7.192 24 C -0.180 4.180 25 C -0.146 4.146 26 C 0.001 3.999 27 C 0.037 3.963 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.115 0.885 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.300 -10.841 -17.202 20.599 hybrid contribution 0.700 1.143 0.228 1.360 sum 4.000 -9.698 -16.974 19.954 Atomic orbital electron populations 1.70029 1.05224 1.25883 1.53411 1.24999 0.95277 0.98411 1.00885 0.86370 0.78946 0.83311 0.78177 1.20986 1.21561 1.20853 1.19115 0.93264 0.84683 1.41289 0.91337 1.44075 1.34179 1.00838 1.52516 1.21582 0.98631 0.87569 0.93958 1.23097 0.86657 0.99760 0.93631 1.87648 1.42585 1.29194 1.69834 1.22710 0.92540 0.86091 0.94241 1.23035 1.00811 1.01330 0.93046 1.22097 0.81802 0.98824 0.99151 1.48605 1.12155 1.56748 1.16923 1.20182 0.86495 0.77145 0.84128 1.90690 1.15399 1.56837 1.79141 1.21295 0.99479 0.98248 0.93189 1.21378 0.98395 1.02556 0.91977 1.22140 1.01970 0.95152 0.98931 1.21575 0.84190 0.90018 0.98817 1.92815 1.55539 1.75224 1.95622 1.22124 0.98296 1.02964 0.94631 1.21402 1.01528 0.94081 0.97588 1.22145 0.95960 1.00762 0.81046 1.21131 0.89569 0.97148 0.88502 0.93363 0.95577 0.91915 0.89977 0.93483 0.89544 0.89432 0.91772 0.91793 0.89333 0.89925 0.91172 0.90065 0.90453 0.90020 0.89915 0.90382 0.90811 0.90457 0.89725 0.89896 0.88511 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.07 11.19 55.49 0.62 -24.45 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.58 9.66 -15.06 -0.15 -6.72 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.05 2.98 -172.25 -0.51 -14.56 16 10 C 0.11 2.19 6.71 -3.53 -0.02 2.16 16 11 C 0.05 0.79 6.78 37.30 0.25 1.04 16 12 O -0.37 -7.04 10.29 -35.22 -0.36 -7.40 16 13 C 0.09 1.59 0.84 -89.54 -0.08 1.52 16 14 C -0.14 -2.30 5.86 -25.24 -0.15 -2.45 16 15 C 0.10 1.37 5.99 -2.96 -0.02 1.35 16 16 N -0.61 -9.47 3.33 -170.64 -0.57 -10.04 16 17 C 0.53 8.26 6.86 -10.99 -0.08 8.19 16 18 O -0.54 -10.46 16.55 5.56 0.09 -10.37 16 19 C -0.10 -1.12 2.21 -91.77 -0.20 -1.33 16 20 C -0.11 -1.11 4.73 -26.73 -0.13 -1.24 16 21 C -0.14 -1.09 5.72 -26.73 -0.15 -1.24 16 22 C 0.09 0.71 4.12 -26.73 -0.11 0.60 16 23 F -0.21 -2.37 16.04 2.25 0.04 -2.33 16 24 C -0.14 -1.06 5.72 -26.73 -0.15 -1.22 16 25 C -0.11 -1.12 5.06 -26.73 -0.14 -1.25 16 26 C 0.12 2.18 6.08 -2.76 -0.02 2.16 16 27 C 0.16 3.69 4.09 -3.91 -0.02 3.68 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.76 6.22 -51.92 -0.32 0.44 16 33 H 0.09 1.37 6.07 -51.93 -0.32 1.06 16 34 H 0.09 1.48 7.83 -51.93 -0.41 1.07 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.71 7.96 -51.93 -0.41 0.30 16 37 H 0.09 0.82 7.00 -51.93 -0.36 0.46 16 38 H 0.08 1.07 7.51 -51.93 -0.39 0.68 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.96 7.80 -51.93 -0.41 0.55 16 47 H 0.08 1.49 8.00 -51.93 -0.42 1.07 16 48 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 49 H 0.10 2.39 5.94 -51.93 -0.31 2.08 16 50 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -31.17 382.82 -9.56 -40.73 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.37 Total: 1.75 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.23 Total: 5.24 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.46 Total: -49.05 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.27 Total: -17.77 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.17 -9.56 -40.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972533139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.302 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds