Wall clock time and date at job start Sat Apr 11 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99757 * 2 1 4 4 H 1.48500 * 109.46869 * 239.99525 * 3 2 1 5 5 H 1.48500 * 109.47383 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47103 * 120.00003 * 3 2 1 7 7 C 1.38814 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00047 * 198.74130 * 7 2 1 9 9 N 1.36933 * 119.99686 * 18.74642 * 7 2 1 10 10 C 1.47168 * 121.07908 * 204.81703 * 9 7 2 11 11 C 1.53278 * 108.57853 * 231.21852 * 10 9 7 12 12 O 1.43120 * 109.21899 * 307.00189 * 11 10 9 13 13 C 1.41880 * 114.36774 * 60.89603 * 12 11 10 14 14 C 1.54378 * 110.70658 * 63.26540 * 13 12 11 15 15 C 1.54461 * 102.87040 * 83.68631 * 14 13 12 16 16 N 1.47077 * 107.29626 * 21.50052 * 15 14 13 17 17 C 1.34774 * 125.63088 * 180.94514 * 16 15 14 18 18 O 1.21280 * 119.99815 * 184.22656 * 17 16 15 19 19 C 1.50697 * 120.00101 * 3.95675 * 17 16 15 20 20 C 1.53000 * 109.47262 * 214.10415 * 19 17 16 21 21 C 1.52999 * 109.47143 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.47185 * 59.99962 * 21 20 19 23 23 F 1.39900 * 109.46969 * 60.00034 * 22 21 20 24 24 C 1.53000 * 109.47111 * 300.00057 * 22 21 20 25 25 C 1.52999 * 109.47143 * 59.99917 * 24 22 21 26 26 C 1.47579 * 108.73942 * 1.21559 * 16 15 14 27 27 C 1.47337 * 121.08587 * 24.81422 * 9 7 2 28 28 H 0.96997 * 119.99972 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.61798 * 111.49172 * 10 9 7 30 30 H 1.08999 * 109.76515 * 351.03537 * 10 9 7 31 31 H 1.08999 * 109.51212 * 187.07348 * 11 10 9 32 32 H 1.09011 * 109.51381 * 66.92256 * 11 10 9 33 33 H 1.09005 * 110.73418 * 325.34133 * 14 13 12 34 34 H 1.09003 * 110.73656 * 202.03409 * 14 13 12 35 35 H 1.09001 * 109.87608 * 262.07385 * 15 14 13 36 36 H 1.08997 * 109.87484 * 140.92495 * 15 14 13 37 37 H 1.09001 * 109.47023 * 334.10712 * 19 17 16 38 38 H 1.09001 * 109.47344 * 300.00100 * 20 19 17 39 39 H 1.08996 * 109.46997 * 59.99884 * 20 19 17 40 40 H 1.09001 * 109.47005 * 300.00213 * 21 20 19 41 41 H 1.08992 * 109.47065 * 180.02562 * 21 20 19 42 42 H 1.09005 * 109.47243 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47344 * 299.99912 * 24 22 21 44 44 H 1.09005 * 109.47182 * 179.97438 * 24 22 21 45 45 H 1.09005 * 109.46851 * 179.97438 * 25 24 22 46 46 H 1.09005 * 109.47050 * 60.00279 * 25 24 22 47 47 H 1.09001 * 110.38144 * 95.28292 * 26 16 15 48 48 H 1.09003 * 110.37350 * 217.62972 * 26 16 15 49 49 H 1.09001 * 109.67491 * 11.10433 * 27 9 7 50 50 H 1.09003 * 109.67906 * 250.55997 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2022 0.0005 8 1 3.0473 -1.2268 0.3010 9 7 1.3801 -2.3567 -0.3801 10 6 1.8476 -3.6692 0.0938 11 6 2.0264 -4.5907 -1.1179 12 8 0.8173 -4.6017 -1.8838 13 6 0.4375 -3.3345 -2.3964 14 6 1.4957 -2.8079 -3.3895 15 6 1.0996 -3.4991 -4.7128 16 7 -0.3139 -3.8884 -4.5968 17 6 -1.0299 -4.5352 -5.5377 18 8 -2.2130 -4.7392 -5.3658 19 6 -0.3618 -4.9997 -6.8061 20 6 -1.3504 -4.8997 -7.9695 21 6 -0.6722 -5.3719 -9.2571 22 6 -0.2227 -6.8252 -9.0934 23 9 -1.3358 -7.6307 -8.8302 24 6 0.7659 -6.9252 -7.9300 25 6 0.0877 -6.4530 -6.6424 26 6 -0.8207 -3.4480 -3.2826 27 6 0.2118 -2.3255 -1.2773 28 1 -0.4850 0.8400 0.0004 29 1 1.1104 -4.0969 0.7732 30 1 2.8002 -3.5563 0.6114 31 1 2.2506 -5.6013 -0.7768 32 1 2.8458 -4.2241 -1.7364 33 1 2.4972 -3.1086 -3.0817 34 1 1.4294 -1.7241 -3.4853 35 1 1.7164 -4.3843 -4.8675 36 1 1.2262 -2.8065 -5.5449 37 1 0.5053 -4.3718 -7.0110 38 1 -2.2174 -5.5276 -7.7646 39 1 -1.6709 -3.8644 -8.0858 40 1 0.1951 -4.7442 -9.4622 41 1 -1.3763 -5.3001 -10.0860 42 1 0.2601 -7.1617 -10.0109 43 1 1.6332 -6.2976 -8.1351 44 1 1.0858 -7.9607 -7.8131 45 1 0.7920 -6.5248 -5.8135 46 1 -0.7795 -7.0807 -6.4372 47 1 -1.3141 -2.4801 -3.3709 48 1 -1.5073 -4.1889 -2.8729 49 1 0.1005 -1.3270 -1.7002 50 1 -0.6864 -2.5907 -0.7197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972533139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:23 Heat of formation + Delta-G solvation = -132.006413 kcal Electronic energy + Delta-G solvation = -31686.246106 eV Core-core repulsion = 27434.099315 eV Total energy + Delta-G solvation = -4252.146791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.54478 -41.72753 -40.45597 -38.13378 -37.41578 -36.26307 -33.29249 -33.08891 -31.87247 -31.50992 -30.88131 -29.10656 -27.51957 -25.37422 -24.67311 -23.78482 -23.61064 -22.90098 -20.89783 -20.54823 -19.88397 -18.91274 -18.37604 -17.63938 -17.39692 -16.90176 -16.59921 -16.33439 -16.24202 -16.21593 -16.10974 -15.76743 -15.24850 -15.17665 -14.65549 -14.55157 -14.40864 -14.24599 -14.14136 -13.70531 -13.62740 -13.42943 -13.20757 -13.10439 -12.95875 -12.79661 -12.73402 -12.61780 -12.48898 -12.21572 -12.19031 -12.03162 -11.92583 -11.81683 -11.68472 -11.43341 -11.15751 -11.02862 -10.82386 -10.65239 -10.45450 -9.70233 -8.75121 -7.89613 -5.34153 1.48761 1.50319 1.54951 1.57599 1.89845 2.49173 2.71251 3.22984 3.32060 3.46513 3.57837 3.59181 3.65843 3.84827 3.91949 3.98990 4.02823 4.11593 4.17817 4.22401 4.29550 4.31972 4.36361 4.38300 4.48700 4.50222 4.56710 4.65192 4.69038 4.74652 4.75837 4.87827 4.91466 4.99343 5.02788 5.04062 5.04323 5.12160 5.15380 5.17836 5.23316 5.25261 5.29511 5.45352 5.48992 5.62532 6.28477 6.40268 6.50704 7.05880 7.09712 7.75556 8.30416 9.16905 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020735 B = 0.002771 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.053644 B =10100.931017 C =10497.934005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.259 4.259 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.102 3.898 11 C 0.053 3.947 12 O -0.383 6.383 13 C 0.095 3.905 14 C -0.137 4.137 15 C 0.109 3.891 16 N -0.611 5.611 17 C 0.524 3.476 18 O -0.592 6.592 19 C -0.090 4.090 20 C -0.106 4.106 21 C -0.137 4.137 22 C 0.078 3.922 23 F -0.237 7.237 24 C -0.135 4.135 25 C -0.107 4.107 26 C 0.125 3.875 27 C 0.174 3.826 28 H 0.250 0.750 29 H 0.009 0.991 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.071 0.929 50 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 -11.259 -19.927 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.388 4.388 8 H 0.094 0.906 9 N -0.332 5.332 10 C -0.023 4.023 11 C -0.024 4.024 12 O -0.302 6.302 13 C 0.053 3.947 14 C -0.175 4.175 15 C -0.013 4.013 16 N -0.343 5.343 17 C 0.315 3.685 18 O -0.473 6.473 19 C -0.111 4.111 20 C -0.144 4.144 21 C -0.175 4.175 22 C 0.043 3.957 23 F -0.218 7.218 24 C -0.173 4.173 25 C -0.145 4.145 26 C 0.002 3.998 27 C 0.048 3.952 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.141 0.859 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges 7.157 -11.453 -19.898 24.049 hybrid contribution -0.532 1.284 1.199 1.836 sum 6.625 -10.168 -18.700 22.293 Atomic orbital electron populations 1.70206 1.06814 1.26046 1.55302 1.25765 0.95900 1.01536 1.01318 0.85346 0.77511 0.79065 0.78573 1.19670 1.22591 1.20313 1.19484 0.93648 0.85531 1.40160 0.90577 1.44342 1.34031 1.01814 1.53014 1.21795 0.98527 0.86506 0.95516 1.23179 0.86309 1.00811 0.92061 1.87650 1.43708 1.28842 1.70045 1.22372 0.94064 0.85065 0.93212 1.22934 1.00092 1.00790 0.93681 1.22266 0.80213 1.00458 0.98344 1.48695 1.13314 1.56565 1.15743 1.21152 0.86080 0.76089 0.85164 1.90666 1.17829 1.58568 1.80246 1.21363 1.00132 0.99195 0.90408 1.21363 0.97573 1.01799 0.93683 1.22146 1.02991 0.95434 0.96883 1.21957 0.83573 0.89801 1.00400 1.92773 1.57135 1.76042 1.95871 1.22142 0.98713 1.03980 0.92449 1.21391 1.00557 0.92822 0.99713 1.21898 0.95456 0.99725 0.82754 1.20850 0.88003 0.97091 0.89268 0.94085 0.97255 0.90570 0.86580 0.91700 0.88650 0.90691 0.88934 0.88508 0.85884 0.93482 0.91450 0.86908 0.89999 0.86873 0.86683 0.89720 0.90488 0.93782 0.90656 0.92172 0.91039 0.99451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.26 11.19 21.65 0.24 -54.02 16 2 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 3 Si 0.97 42.77 29.59 68.60 2.03 44.80 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.26 -13.40 9.66 84.03 0.81 -12.59 16 8 H 0.08 3.76 7.89 -2.91 -0.02 3.74 16 9 N -0.61 -29.21 2.98 -698.86 -2.08 -31.30 16 10 C 0.10 4.03 6.71 86.35 0.58 4.61 16 11 C 0.05 1.69 6.78 72.08 0.49 2.17 16 12 O -0.38 -14.07 10.29 -148.95 -1.53 -15.60 16 13 C 0.09 3.53 0.84 -10.09 -0.01 3.52 16 14 C -0.14 -4.10 5.86 31.56 0.19 -3.92 16 15 C 0.11 2.47 5.99 86.77 0.52 2.99 16 16 N -0.61 -18.36 3.33 -812.17 -2.71 -21.07 16 17 C 0.52 16.14 6.86 87.66 0.60 16.74 16 18 O -0.59 -23.94 16.55 -3.03 -0.05 -23.99 16 19 C -0.09 -1.80 2.21 -11.54 -0.03 -1.83 16 20 C -0.11 -2.12 4.73 30.59 0.14 -1.98 16 21 C -0.14 -1.62 5.72 30.59 0.17 -1.44 16 22 C 0.08 0.98 4.12 30.59 0.13 1.10 16 23 F -0.24 -5.13 16.04 44.97 0.72 -4.40 16 24 C -0.14 -1.49 5.72 30.59 0.17 -1.31 16 25 C -0.11 -1.98 5.06 30.59 0.15 -1.82 16 26 C 0.13 4.62 6.08 86.62 0.53 5.14 16 27 C 0.17 8.28 4.09 86.01 0.35 8.63 16 28 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 2.77 7.96 -2.39 -0.02 2.75 16 31 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.06 1.85 6.22 -2.38 -0.01 1.84 16 33 H 0.10 2.70 6.07 -2.38 -0.01 2.69 16 34 H 0.07 2.45 7.83 -2.39 -0.02 2.43 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 1.65 7.96 -2.39 -0.02 1.63 16 37 H 0.12 1.64 7.00 -2.39 -0.02 1.62 16 38 H 0.05 1.27 7.51 -2.39 -0.02 1.25 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.11 0.75 8.14 -2.38 -0.02 0.74 16 43 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.04 1.10 7.80 -2.38 -0.02 1.08 16 47 H 0.08 2.86 8.00 -2.39 -0.02 2.84 16 48 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 49 H 0.07 3.74 5.94 -2.39 -0.01 3.72 16 50 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 Total: -1.00 -73.33 382.82 2.77 -70.56 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.92 Total: 17.24 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 5.22 Total: 17.77 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -4.55 Total: -106.39 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -1.58 Total: -39.59 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.72 Total: -4.40 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.33 2.77 -70.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972533139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.445 kcal (2) G-P(sol) polarization free energy of solvation -73.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds