Wall clock time and date at job start Sat Apr 11 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 120.00263 * 2 1 4 4 H 1.08000 * 120.00136 * 203.79975 * 3 2 1 5 5 C 1.38817 * 119.99704 * 23.79969 * 3 2 1 6 6 N 1.31626 * 119.99847 * 10.98489 * 5 3 2 7 7 Si 1.86796 * 119.99897 * 190.98819 * 5 3 2 8 8 H 1.48498 * 109.47354 * 89.99843 * 7 5 3 9 9 H 1.48497 * 109.47352 * 209.99709 * 7 5 3 10 10 H 1.48503 * 109.47280 * 330.00073 * 7 5 3 11 11 C 1.46497 * 120.00148 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.89203 * 182.43156 * 11 2 1 13 13 C 1.55156 * 111.00519 * 58.54866 * 11 2 1 14 14 C 1.54326 * 103.10608 * 206.29849 * 13 11 2 15 15 N 1.47480 * 107.03268 * 22.23957 * 14 13 11 16 16 C 1.34777 * 125.59147 * 181.00452 * 15 14 13 17 17 O 1.21285 * 119.99929 * 180.02562 * 16 15 14 18 18 C 1.50693 * 119.99966 * 0.02562 * 16 15 14 19 19 C 1.54889 * 129.09059 * 299.93430 * 18 16 15 20 20 C 1.57162 * 77.91705 * 180.16607 * 19 18 16 21 21 C 1.50710 * 129.25119 * 179.20016 * 20 19 18 22 22 C 1.38236 * 119.99833 * 241.01222 * 21 20 19 23 23 C 1.38232 * 119.99965 * 179.74130 * 22 21 20 24 24 C 1.38231 * 119.99770 * 0.55389 * 23 22 21 25 25 C 1.38239 * 120.00129 * 359.69803 * 24 23 22 26 26 C 1.38227 * 119.99814 * 0.02562 * 25 24 23 27 27 C 1.54409 * 83.73214 * 42.47548 * 20 19 18 28 28 C 1.54885 * 83.77642 * 317.35825 * 20 19 18 29 29 C 1.47423 * 108.76126 * 1.02631 * 15 14 13 30 30 H 1.08998 * 109.47466 * 274.82453 * 1 2 3 31 31 H 1.09003 * 109.46932 * 34.82499 * 1 2 3 32 32 H 1.09003 * 109.46881 * 154.81989 * 1 2 3 33 33 H 0.96998 * 119.99425 * 180.02562 * 6 5 3 34 34 H 1.09007 * 110.71871 * 324.75505 * 13 11 2 35 35 H 1.09001 * 110.72124 * 87.84272 * 13 11 2 36 36 H 1.08998 * 109.88311 * 141.69671 * 14 13 11 37 37 H 1.08994 * 109.88287 * 262.86329 * 14 13 11 38 38 H 1.09003 * 114.98227 * 291.96247 * 19 18 16 39 39 H 1.09005 * 114.97687 * 67.13533 * 19 18 16 40 40 H 1.08002 * 119.99873 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.99679 * 180.27400 * 23 22 21 42 42 H 1.07999 * 119.99726 * 179.72741 * 24 23 22 43 43 H 1.08004 * 119.99692 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00194 * 179.97438 * 26 25 24 45 45 H 1.09001 * 114.93510 * 205.05816 * 27 20 19 46 46 H 1.09003 * 114.98449 * 70.03299 * 27 20 19 47 47 H 1.09004 * 116.12553 * 290.12202 * 28 20 19 48 48 H 1.09004 * 113.83576 * 154.95820 * 28 20 19 49 49 H 1.08997 * 110.37366 * 217.05241 * 29 15 14 50 50 H 1.09005 * 110.36704 * 94.72941 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1608 1.2256 -0.3774 5 6 1.5442 2.3370 0.4851 6 7 0.4051 2.2555 1.1397 7 14 2.3458 4.0014 0.2090 8 1 1.8567 4.5807 -1.0678 9 1 1.9979 4.9106 1.3304 10 1 3.8202 3.8362 0.1449 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0966 0.0437 13 6 1.8211 -2.1288 -1.2347 14 6 2.0915 -3.5699 -0.7532 15 7 2.0433 -3.5491 0.7206 16 6 2.2484 -4.6093 1.5272 17 8 2.1837 -4.4769 2.7310 18 6 2.5580 -5.9592 0.9332 19 6 1.7066 -6.8194 -0.0333 20 6 2.9785 -7.7189 0.1740 21 6 3.2893 -9.0777 -0.3992 22 6 3.4852 -10.1552 0.4443 23 6 3.7650 -11.4026 -0.0816 24 6 3.8601 -11.5701 -1.4505 25 6 3.6694 -10.4914 -2.2937 26 6 3.3840 -9.2452 -1.7680 27 6 2.8261 -7.2992 1.6521 28 6 3.7422 -6.3794 0.0276 29 6 1.7337 -2.1782 1.1657 30 1 -0.3634 0.0864 1.0240 31 1 -0.3633 0.8436 -0.5869 32 1 -0.3633 -0.9300 -0.4373 33 1 -0.0182 3.0599 1.4783 34 1 0.7693 -1.9982 -1.4895 35 1 2.4560 -1.8808 -2.0853 36 1 1.3255 -4.2406 -1.1424 37 1 3.0764 -3.8942 -1.0889 38 1 0.7892 -7.2225 0.3958 39 1 1.5794 -6.4006 -1.0317 40 1 3.4160 -10.0233 1.5140 41 1 3.9136 -12.2454 0.5772 42 1 4.0831 -12.5437 -1.8611 43 1 3.7433 -10.6224 -3.3632 44 1 3.2353 -8.4024 -2.4267 45 1 3.7459 -7.3313 2.2361 46 1 1.9642 -7.7258 2.1653 47 1 3.7421 -5.9330 -0.9669 48 1 4.7179 -6.3732 0.5135 49 1 2.2856 -1.9407 2.0751 50 1 0.6621 -2.0660 1.3310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980500335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:41 Heat of formation + Delta-G solvation = 106.359048 kcal Electronic energy + Delta-G solvation = -29093.698056 eV Core-core repulsion = 25282.656792 eV Total energy + Delta-G solvation = -3811.041265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.21808 -40.66330 -39.59073 -38.74476 -36.56003 -33.49216 -32.19905 -31.73915 -31.30182 -29.70309 -28.08247 -26.84375 -26.77804 -26.73782 -24.95652 -23.97706 -23.19238 -22.82220 -20.96638 -20.20075 -19.32122 -18.95795 -18.17182 -17.56949 -17.34008 -16.68286 -16.42199 -15.80957 -15.78281 -15.49369 -15.40028 -15.14645 -15.02783 -14.78150 -14.42749 -14.23725 -14.19814 -14.05500 -13.83992 -13.48749 -13.31380 -13.12274 -12.78523 -12.56009 -12.47457 -12.43111 -12.39327 -12.21481 -12.18394 -12.07776 -12.00306 -11.88006 -11.82726 -11.41251 -11.35434 -11.17439 -10.88974 -10.65455 -9.76365 -9.72060 -9.54032 -8.80232 -7.84525 -5.35964 0.42140 0.56217 1.38171 1.47541 1.47991 1.57127 1.82729 2.50248 2.80351 3.15783 3.19271 3.27355 3.35507 3.46065 3.48723 3.55808 3.62103 3.82845 3.92209 4.13464 4.19213 4.19980 4.23889 4.31454 4.36825 4.42859 4.54140 4.60187 4.63467 4.67885 4.76340 4.76724 4.79108 4.84143 4.89842 4.93890 4.94802 5.00989 5.08430 5.18331 5.21087 5.22383 5.25183 5.30432 5.43053 5.63868 5.66007 5.68937 5.71106 5.74775 6.15662 6.30785 6.49900 7.05468 7.12681 7.82483 8.26867 9.18074 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028901 B = 0.002046 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.600094 B =13684.481189 C =14096.112209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.601 5.601 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.972 3.028 8 H -0.283 1.283 9 H -0.299 1.299 10 H -0.267 1.267 11 C 0.167 3.833 12 H 0.074 0.926 13 C -0.140 4.140 14 C 0.108 3.892 15 N -0.606 5.606 16 C 0.578 3.422 17 O -0.592 6.592 18 C -0.175 4.175 19 C -0.083 4.083 20 C -0.064 4.064 21 C -0.037 4.037 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.113 4.113 27 C -0.093 4.093 28 C -0.080 4.080 29 C 0.097 3.903 30 H -0.002 1.002 31 H 0.019 0.981 32 H 0.035 0.965 33 H 0.248 0.752 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.041 0.959 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -28.689 -10.563 31.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.322 5.322 3 C -0.395 4.395 4 H 0.094 0.906 5 C -0.249 4.249 6 N -0.585 5.585 7 Si 0.801 3.199 8 H -0.210 1.210 9 H -0.226 1.226 10 H -0.192 1.192 11 C 0.058 3.942 12 H 0.092 0.908 13 C -0.179 4.179 14 C -0.014 4.014 15 N -0.338 5.338 16 C 0.368 3.632 17 O -0.473 6.473 18 C -0.178 4.178 19 C -0.120 4.120 20 C -0.064 4.064 21 C -0.037 4.037 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.131 4.131 27 C -0.130 4.130 28 C -0.117 4.117 29 C -0.028 4.028 30 H 0.017 0.983 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.155 0.845 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.124 0.876 48 H 0.094 0.906 49 H 0.060 0.940 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.456 -28.512 -9.835 30.844 hybrid contribution -0.118 1.594 0.973 1.871 sum 6.338 -26.918 -8.862 29.039 Atomic orbital electron populations 1.20503 0.82659 0.96140 0.97379 1.44033 1.02061 1.00867 1.85215 1.19595 0.99235 0.86461 1.34233 0.90576 1.25901 0.98541 1.02238 0.98213 1.70247 1.20080 1.27827 1.40352 0.85187 0.78496 0.79538 0.76726 1.20957 1.22572 1.19168 1.21603 0.95742 0.84597 0.92277 0.90758 1.23084 1.03040 0.92971 0.98841 1.22394 1.03510 0.98019 0.77442 1.48549 1.68399 1.07949 1.08890 1.18948 0.75467 0.83889 0.84920 1.90675 1.54384 1.85548 1.16742 1.23607 1.02847 0.90864 1.00454 1.24612 0.95921 0.92744 0.98724 1.22537 0.97135 0.91412 0.95363 1.18339 1.00973 0.90758 0.93626 1.21160 0.99941 0.92799 1.00105 1.21395 0.99794 0.97256 0.96116 1.21514 0.99418 0.99952 0.93578 1.21449 0.99284 0.92479 1.01073 1.21165 0.99343 0.98507 0.94066 1.23850 1.01828 0.91534 0.95817 1.24140 0.95405 0.92826 0.99372 1.22705 0.99399 0.81436 0.99286 0.98331 0.96181 0.94695 0.94269 0.90876 0.88405 0.89053 0.88751 0.90490 0.87739 0.85894 0.84425 0.84111 0.83915 0.84527 0.90734 0.90635 0.87619 0.90595 0.94046 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.66 7.59 127.77 0.97 9.63 16 2 N -0.60 -29.21 2.96 -695.03 -2.06 -31.27 16 3 C -0.27 -14.23 9.61 84.03 0.81 -13.43 16 4 H 0.08 3.91 7.85 -2.91 -0.02 3.89 16 5 C -0.05 -2.99 5.14 84.86 0.44 -2.55 16 6 N -0.94 -55.81 10.65 21.65 0.23 -55.58 16 7 Si 0.97 44.78 29.57 68.60 2.03 46.81 16 8 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 9 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 C 0.17 6.46 3.54 46.38 0.16 6.63 16 12 H 0.07 2.92 7.96 -2.39 -0.02 2.90 16 13 C -0.14 -3.89 6.48 31.78 0.21 -3.68 16 14 C 0.11 2.42 6.34 86.64 0.55 2.96 16 15 N -0.61 -19.22 3.34 -810.63 -2.71 -21.92 16 16 C 0.58 19.30 7.96 87.65 0.70 19.99 16 17 O -0.59 -25.67 17.35 -3.04 -0.05 -25.72 16 18 C -0.17 -4.02 2.59 -63.69 -0.17 -4.18 16 19 C -0.08 -1.39 7.70 31.90 0.25 -1.14 16 20 C -0.06 -1.04 3.24 -62.87 -0.20 -1.24 16 21 C -0.04 -0.56 5.88 -19.86 -0.12 -0.68 16 22 C -0.12 -1.80 9.66 22.27 0.22 -1.59 16 23 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 24 C -0.13 -1.36 10.05 22.27 0.22 -1.13 16 25 C -0.13 -1.35 10.05 22.27 0.22 -1.13 16 26 C -0.11 -1.43 9.74 22.27 0.22 -1.21 16 27 C -0.09 -1.93 7.33 30.60 0.22 -1.70 16 28 C -0.08 -1.34 7.56 31.07 0.23 -1.11 16 29 C 0.10 3.87 6.47 86.86 0.56 4.43 16 30 H 0.00 -0.09 7.35 -2.39 -0.02 -0.11 16 31 H 0.02 1.04 7.32 -2.39 -0.02 1.02 16 32 H 0.03 1.42 6.34 -2.39 -0.02 1.41 16 33 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.07 2.13 6.36 -2.38 -0.02 2.11 16 35 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.09 1.60 7.20 -2.39 -0.02 1.58 16 37 H 0.09 1.62 7.06 -2.39 -0.02 1.60 16 38 H 0.08 1.35 7.91 -2.39 -0.02 1.33 16 39 H 0.10 1.31 7.17 -2.38 -0.02 1.29 16 40 H 0.12 1.70 7.75 -2.91 -0.02 1.68 16 41 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 44 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 45 H 0.07 1.58 7.94 -2.39 -0.02 1.56 16 46 H 0.08 1.59 7.91 -2.39 -0.02 1.57 16 47 H 0.11 1.31 7.08 -2.38 -0.02 1.29 16 48 H 0.08 1.33 7.93 -2.38 -0.02 1.32 16 49 H 0.04 1.88 8.04 -2.39 -0.02 1.86 16 50 H 0.05 2.17 7.06 -2.38 -0.02 2.16 16 Total: -1.00 -72.02 397.05 4.09 -67.93 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.93 Total: 12.21 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.71 Total: 7.54 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -4.53 Total: -108.78 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.02 4.09 -67.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980500335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.291 kcal (2) G-P(sol) polarization free energy of solvation -72.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds