Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36936 * 119.99605 * 2 1 4 4 H 1.07993 * 119.99929 * 156.16311 * 3 2 1 5 5 C 1.38816 * 120.00032 * 336.15725 * 3 2 1 6 6 N 1.31620 * 119.99879 * 330.47341 * 5 3 2 7 7 Si 1.86793 * 120.00000 * 150.47371 * 5 3 2 8 8 H 1.48496 * 109.47073 * 179.97438 * 7 5 3 9 9 H 1.48504 * 109.46912 * 60.00004 * 7 5 3 10 10 H 1.48503 * 109.47258 * 300.00221 * 7 5 3 11 11 C 1.46499 * 120.00091 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45725 * 60.07097 * 11 2 1 13 13 C 1.53190 * 109.31292 * 178.61066 * 12 11 2 14 14 N 1.46928 * 108.77230 * 54.63519 * 13 12 11 15 15 C 1.34783 * 120.63257 * 126.41453 * 14 13 12 16 16 O 1.21274 * 120.00287 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.99615 * 359.97430 * 15 14 13 18 18 H 1.08996 * 115.54072 * 325.80353 * 17 15 14 19 19 C 1.52962 * 117.47860 * 111.39250 * 17 15 14 20 20 H 1.09001 * 118.97328 * 356.70862 * 19 17 15 21 21 C 1.50934 * 118.99236 * 202.09174 * 19 17 15 22 22 C 1.37611 * 130.73278 * 115.30461 * 21 19 17 23 23 C 1.38017 * 120.73540 * 179.50478 * 22 21 19 24 24 C 1.38252 * 119.88441 * 359.66499 * 23 22 21 25 25 C 1.38016 * 119.88042 * 0.02562 * 24 23 22 26 26 C 1.38783 * 120.30677 * 359.97438 * 25 24 23 27 27 C 1.50979 * 129.71512 * 179.97438 * 26 25 24 28 28 C 1.53039 * 117.47909 * 180.21050 * 17 15 14 29 29 H 1.08997 * 119.41534 * 4.10350 * 28 17 15 30 30 C 1.46925 * 118.74137 * 306.38838 * 14 13 12 31 31 C 1.53033 * 109.46174 * 300.00336 * 11 2 1 32 32 H 1.09002 * 109.47211 * 93.04151 * 1 2 3 33 33 H 1.08998 * 109.46888 * 213.04098 * 1 2 3 34 34 H 1.09000 * 109.47094 * 333.03572 * 1 2 3 35 35 H 0.96999 * 120.00122 * 354.60102 * 6 5 3 36 36 H 1.09000 * 109.45473 * 180.02562 * 11 2 1 37 37 H 1.09007 * 109.49865 * 298.56507 * 12 11 2 38 38 H 1.08997 * 109.49886 * 58.65883 * 12 11 2 39 39 H 1.08990 * 109.58836 * 294.85090 * 13 12 11 40 40 H 1.09001 * 109.58593 * 174.41900 * 13 12 11 41 41 H 1.08000 * 119.42767 * 359.13906 * 22 21 19 42 42 H 1.07997 * 120.05681 * 179.68332 * 23 22 21 43 43 H 1.08002 * 120.05827 * 180.02562 * 24 23 22 44 44 H 1.07992 * 119.84450 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.92095 * 60.96682 * 27 26 25 46 46 H 1.08998 * 110.08548 * 299.74641 * 27 26 25 47 47 H 1.08992 * 109.58885 * 293.82657 * 30 14 13 48 48 H 1.08995 * 109.70753 * 173.46642 * 30 14 13 49 49 H 1.09004 * 109.49622 * 301.33395 * 31 11 2 50 50 H 1.08998 * 109.50512 * 61.43376 * 31 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1605 1.2259 0.3780 5 6 1.5444 2.3368 -0.4860 6 7 0.6318 2.2517 -1.4306 7 14 2.0250 4.0061 0.2008 8 1 1.2399 5.0664 -0.4808 9 1 3.4736 4.2378 -0.0299 10 1 1.7441 4.0412 1.6586 11 6 2.1976 -1.2687 0.0006 12 6 1.8290 -2.0707 -1.2497 13 6 2.6227 -3.3809 -1.2633 14 7 2.3851 -4.0909 0.0009 15 6 1.9589 -5.3696 0.0008 16 8 1.7669 -5.9448 1.0511 17 6 1.7211 -6.0845 -1.3043 18 1 1.3454 -5.4643 -2.1182 19 6 2.6728 -7.2255 -1.6678 20 1 3.5117 -7.4441 -1.0070 21 6 2.8130 -7.6281 -3.1157 22 6 3.8934 -7.5623 -3.9654 23 6 3.7935 -8.0044 -5.2690 24 6 2.5990 -8.5264 -5.7297 25 6 1.5107 -8.6031 -4.8845 26 6 1.6095 -8.1590 -3.5733 27 6 0.5690 -8.1417 -2.4796 28 6 1.2329 -7.5334 -1.2372 29 1 1.0091 -7.9784 -0.2677 30 6 2.6214 -3.3807 1.2652 31 6 1.8277 -2.0705 1.2505 32 1 -0.3634 -0.0545 -1.0262 33 1 -0.3633 -0.8615 0.5603 34 1 -0.3633 0.9159 0.4660 35 1 0.4382 1.3950 -1.8422 36 1 3.2692 -1.0692 0.0009 37 1 0.7617 -2.2920 -1.2384 38 1 2.0711 -1.4894 -2.1393 39 1 3.6857 -3.1632 -1.3659 40 1 2.2921 -3.9997 -2.0976 41 1 4.8267 -7.1542 -3.6065 42 1 4.6469 -7.9430 -5.9280 43 1 2.5178 -8.8736 -6.7492 44 1 0.5781 -9.0113 -5.2448 45 1 0.2397 -9.1582 -2.2642 46 1 -0.2823 -7.5320 -2.7823 47 1 3.6843 -3.1629 1.3688 48 1 2.2918 -3.9982 2.1008 49 1 2.0690 -1.4890 2.1403 50 1 0.7605 -2.2918 1.2383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985690747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = 29.144902 kcal Electronic energy + Delta-G solvation = -29491.624294 eV Core-core repulsion = 25677.234773 eV Total energy + Delta-G solvation = -3814.389521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 6.13 seconds Orbital eigenvalues (eV) -42.14962 -40.84998 -39.19764 -37.78404 -36.93262 -34.09015 -32.86314 -32.24142 -31.57609 -31.25304 -28.73478 -28.19686 -26.77986 -25.45928 -24.16503 -23.70219 -22.97777 -21.94818 -21.40613 -20.89455 -19.86323 -19.41664 -18.54193 -17.41447 -17.04138 -16.56242 -16.48459 -16.11093 -15.96122 -15.79771 -15.46827 -15.35155 -15.17723 -14.73347 -14.58597 -14.46589 -14.24566 -13.83037 -13.76378 -13.53488 -13.52754 -13.42089 -13.18865 -12.84059 -12.78095 -12.49756 -12.38737 -12.28810 -12.23530 -11.91521 -11.83916 -11.74547 -11.68423 -11.65874 -11.32208 -11.07408 -10.91798 -10.42577 -9.79722 -9.71057 -9.40791 -8.97551 -8.25503 -5.35166 0.30478 0.46539 1.33809 1.58713 1.65714 1.81162 1.84542 2.49891 2.65493 2.88988 3.14905 3.19914 3.45503 3.47028 3.65226 3.67377 3.83899 3.86946 3.98419 4.06558 4.07707 4.15868 4.20509 4.22494 4.27015 4.32481 4.45025 4.55653 4.57824 4.65274 4.67439 4.72949 4.74615 4.78331 4.83079 4.85023 4.87520 4.92567 4.97247 5.04256 5.08763 5.09999 5.24869 5.26836 5.36793 5.51609 5.53860 5.61594 5.69157 5.84714 6.08524 6.28790 6.39803 7.01460 7.06362 7.79523 8.20159 9.00470 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.002450 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.965042 B =11426.598524 C =12256.296272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.613 5.613 3 C -0.361 4.361 4 H 0.053 0.947 5 C -0.072 4.072 6 N -0.939 5.939 7 Si 1.108 2.892 8 H -0.294 1.294 9 H -0.275 1.275 10 H -0.283 1.283 11 C 0.175 3.825 12 C -0.137 4.137 13 C 0.120 3.880 14 N -0.601 5.601 15 C 0.547 3.453 16 O -0.578 6.578 17 C -0.155 4.155 18 H 0.132 0.868 19 C -0.089 4.089 20 H 0.116 0.884 21 C -0.087 4.087 22 C -0.109 4.109 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.103 4.103 27 C -0.051 4.051 28 C -0.120 4.120 29 H 0.127 0.873 30 C 0.122 3.878 31 C -0.131 4.131 32 H -0.006 1.006 33 H 0.040 0.960 34 H 0.022 0.978 35 H 0.256 0.744 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.140 0.860 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.069 0.931 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 -24.333 -6.637 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.336 5.336 3 C -0.491 4.491 4 H 0.071 0.929 5 C -0.270 4.270 6 N -0.581 5.581 7 Si 0.933 3.067 8 H -0.220 1.220 9 H -0.200 1.200 10 H -0.210 1.210 11 C 0.069 3.931 12 C -0.177 4.177 13 C -0.003 4.003 14 N -0.332 5.332 15 C 0.336 3.664 16 O -0.458 6.458 17 C -0.176 4.176 18 H 0.149 0.851 19 C -0.108 4.108 20 H 0.134 0.866 21 C -0.087 4.087 22 C -0.127 4.127 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.103 4.103 27 C -0.088 4.088 28 C -0.138 4.138 29 H 0.145 0.855 30 C -0.001 4.001 31 C -0.171 4.171 32 H 0.012 0.988 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.124 0.876 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.087 0.913 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.193 -22.983 -6.132 24.154 hybrid contribution 0.195 -1.019 0.100 1.042 sum 4.388 -24.002 -6.032 25.135 Atomic orbital electron populations 1.20694 0.84205 0.98033 0.96614 1.44199 1.01138 1.01907 1.86346 1.20165 1.00968 0.88381 1.39551 0.92891 1.27015 0.98990 1.05343 0.95602 1.70908 1.37852 1.27454 1.21844 0.82941 0.75958 0.72231 0.75521 1.22025 1.20050 1.20995 1.20495 0.95329 0.84611 0.92714 1.22321 0.99832 0.95970 0.99577 1.21841 1.00757 0.92405 0.85274 1.48115 1.65202 1.11674 1.08195 1.19810 0.75444 0.81276 0.89860 1.90648 1.53783 1.66975 1.34440 1.22134 1.06629 0.92089 0.96728 0.85053 1.21296 0.95253 1.00012 0.94217 0.86571 1.19763 0.95019 1.00772 0.93188 1.20607 0.98306 0.99946 0.93840 1.21338 0.99010 0.98853 0.95310 1.21413 0.92690 0.98883 1.00633 1.20941 1.00144 1.00442 0.91947 1.21093 0.95056 0.98815 0.95360 1.20328 0.96579 1.02582 0.89285 1.22998 0.96290 0.93852 1.00663 0.85487 1.21552 1.00290 0.92061 0.86167 1.22237 0.99758 0.95575 0.99551 0.98754 0.94172 0.95947 0.93373 0.92323 0.93190 0.92227 0.89740 0.87906 0.85437 0.83753 0.83468 0.84231 0.87603 0.88777 0.89963 0.89686 0.91284 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.23 8.09 127.77 1.03 8.26 16 2 N -0.61 -29.98 2.68 -702.62 -1.88 -31.87 16 3 C -0.36 -19.85 9.39 84.03 0.79 -19.06 16 4 H 0.05 2.91 7.95 -2.91 -0.02 2.88 16 5 C -0.07 -4.07 4.61 84.86 0.39 -3.68 16 6 N -0.94 -56.83 12.74 21.65 0.28 -56.55 16 7 Si 1.11 50.72 30.01 68.60 2.06 52.78 16 8 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 C 0.18 6.78 2.56 45.02 0.12 6.89 16 12 C -0.14 -4.57 5.34 30.67 0.16 -4.41 16 13 C 0.12 3.01 6.35 86.36 0.55 3.56 16 14 N -0.60 -16.43 2.97 -818.92 -2.43 -18.86 16 15 C 0.55 15.38 7.48 87.66 0.66 16.04 16 16 O -0.58 -19.77 15.75 -3.01 -0.05 -19.82 16 17 C -0.16 -3.42 4.70 -11.54 -0.05 -3.48 16 18 H 0.13 2.71 6.56 -2.39 -0.02 2.70 16 19 C -0.09 -1.79 6.54 -11.34 -0.07 -1.86 16 20 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 21 C -0.09 -1.64 6.00 -19.69 -0.12 -1.76 16 22 C -0.11 -1.83 9.97 22.07 0.22 -1.61 16 23 C -0.13 -1.78 10.05 22.22 0.22 -1.55 16 24 C -0.12 -1.54 10.05 22.22 0.22 -1.31 16 25 C -0.12 -1.67 10.04 22.35 0.22 -1.45 16 26 C -0.10 -1.76 6.15 -19.40 -0.12 -1.88 16 27 C -0.05 -0.78 6.57 30.08 0.20 -0.59 16 28 C -0.12 -2.35 6.56 -10.49 -0.07 -2.42 16 29 H 0.13 2.70 7.79 -2.39 -0.02 2.68 16 30 C 0.12 3.48 6.43 86.36 0.56 4.03 16 31 C -0.13 -4.42 5.30 30.67 0.16 -4.26 16 32 H -0.01 -0.28 6.87 -2.39 -0.02 -0.30 16 33 H 0.04 1.69 6.47 -2.39 -0.02 1.68 16 34 H 0.02 1.17 7.27 -2.39 -0.02 1.15 16 35 H 0.26 15.72 6.37 -92.71 -0.59 15.13 16 36 H 0.06 2.33 7.87 -2.39 -0.02 2.31 16 37 H 0.05 1.75 7.72 -2.38 -0.02 1.73 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.10 2.17 5.51 -2.39 -0.01 2.16 16 41 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 44 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.08 2.52 7.01 -2.39 -0.02 2.50 16 49 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 50 H 0.05 1.78 6.74 -2.39 -0.02 1.77 16 Total: -1.00 -69.17 390.98 4.15 -65.02 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 1.11 Total: 19.83 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.07 Total: -10.53 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -4.04 Total: -107.28 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.06 Total: 52.78 kcal Total: -69.17 4.15 -65.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985690747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.164 kcal (2) G-P(sol) polarization free energy of solvation -69.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.14 seconds