Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48498 * 109.47120 * 266.65801 * 3 2 1 5 5 H 1.48497 * 109.47304 * 26.66046 * 3 2 1 6 6 H 1.48500 * 109.46833 * 146.66380 * 3 2 1 7 7 C 1.38817 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00026 * 347.08673 * 7 2 1 9 9 N 1.36932 * 120.00080 * 167.08899 * 7 2 1 10 10 C 1.47423 * 125.64961 * 138.10929 * 9 7 2 11 11 C 1.54906 * 104.83441 * 204.14766 * 10 9 7 12 12 C 1.55151 * 101.58293 * 322.99158 * 11 10 9 13 13 C 1.47017 * 125.64912 * 318.13472 * 9 7 2 14 14 H 1.09002 * 110.01409 * 59.42794 * 13 9 7 15 15 C 1.53005 * 109.88444 * 298.33601 * 13 9 7 16 16 C 1.53037 * 109.45872 * 68.39721 * 15 13 9 17 17 C 1.53193 * 109.31280 * 178.61703 * 16 15 13 18 18 N 1.46922 * 108.77634 * 54.64035 * 17 16 15 19 19 C 1.34769 * 120.63590 * 126.36754 * 18 17 16 20 20 O 1.21281 * 120.00071 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.00365 * 179.97438 * 19 18 17 22 22 F 1.39899 * 110.45343 * 54.29833 * 21 19 18 23 23 C 1.54505 * 110.51241 * 176.90509 * 21 19 18 24 24 C 1.54479 * 104.06514 * 118.78381 * 23 21 19 25 25 O 1.44427 * 104.80325 * 23.97707 * 24 23 21 26 26 C 1.44426 * 105.27437 * 319.49222 * 25 24 23 27 27 C 1.46933 * 118.73518 * 306.63972 * 18 17 16 28 28 C 1.52763 * 109.00548 * 53.31157 * 27 18 17 29 29 H 0.97001 * 119.99671 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.36993 * 85.30557 * 10 9 7 31 31 H 1.09005 * 110.45874 * 323.03534 * 10 9 7 32 32 H 1.08998 * 111.01029 * 204.91282 * 11 10 9 33 33 H 1.09007 * 111.00010 * 81.06254 * 11 10 9 34 34 H 1.08993 * 110.72041 * 277.13788 * 12 11 10 35 35 H 1.09008 * 110.87473 * 153.93140 * 12 11 10 36 36 H 1.08989 * 109.46248 * 188.37457 * 15 13 9 37 37 H 1.09001 * 109.49883 * 58.66258 * 16 15 13 38 38 H 1.09005 * 109.52777 * 298.58754 * 16 15 13 39 39 H 1.08995 * 109.58456 * 294.84992 * 17 16 15 40 40 H 1.09004 * 109.70284 * 174.49534 * 17 16 15 41 41 H 1.09005 * 110.50930 * 237.42691 * 23 21 19 42 42 H 1.09001 * 110.51106 * 0.13653 * 23 21 19 43 43 H 1.08998 * 110.37454 * 142.80427 * 24 23 21 44 44 H 1.08999 * 110.37003 * 265.03619 * 24 23 21 45 45 H 1.09006 * 110.37196 * 281.68078 * 26 25 24 46 46 H 1.09001 * 110.37778 * 159.34176 * 26 25 24 47 47 H 1.08995 * 109.58494 * 173.14375 * 27 18 17 48 48 H 1.09001 * 109.58824 * 293.57273 * 27 18 17 49 49 H 1.09007 * 109.56370 * 185.55147 * 28 27 18 50 50 H 1.09001 * 109.38768 * 65.51773 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5684 2.0055 -1.3977 5 1 1.4143 2.6720 0.6282 6 1 3.5107 1.4614 0.7694 7 6 2.0103 -1.2022 -0.0005 8 1 1.4907 -2.1258 0.2081 9 7 3.3536 -1.2172 -0.2655 10 6 4.3610 -2.0237 0.4472 11 6 5.6958 -1.2656 0.2387 12 6 5.5374 -0.7502 -1.2161 13 6 4.0302 -0.4311 -1.3075 14 1 3.8656 0.6330 -1.1380 15 6 3.4974 -0.8267 -2.6861 16 6 2.0442 -0.3664 -2.8224 17 6 1.5251 -0.7334 -4.2161 18 7 1.7246 -2.1730 -4.4312 19 6 0.6954 -2.9616 -4.7987 20 8 -0.4084 -2.4843 -4.9554 21 6 0.9163 -4.4365 -5.0161 22 9 1.5030 -5.0148 -3.8853 23 6 -0.4173 -5.1397 -5.3536 24 6 -0.1877 -5.7222 -6.7659 25 8 1.2453 -5.8638 -6.8781 26 6 1.7941 -4.6772 -6.2643 27 6 3.0665 -2.7377 -4.2321 28 6 3.5695 -2.3472 -2.8436 29 1 -0.4850 0.8401 -0.0004 30 1 4.4211 -3.0231 0.0162 31 1 4.1202 -2.0831 1.5086 32 1 6.5465 -1.9418 0.3232 33 1 5.7872 -0.4357 0.9395 34 1 5.8116 -1.5252 -1.9317 35 1 6.1324 0.1490 -1.3765 36 1 4.1024 -0.3527 -3.4590 37 1 1.9905 0.7138 -2.6868 38 1 1.4336 -0.8588 -2.0654 39 1 2.0754 -0.1714 -4.9706 40 1 0.4633 -0.4971 -4.2868 41 1 -0.6196 -5.9380 -4.6395 42 1 -1.2361 -4.4203 -5.3657 43 1 -0.6734 -6.6935 -6.8593 44 1 -0.5635 -5.0361 -7.5249 45 1 1.7240 -3.8300 -6.9465 46 1 2.8307 -4.8457 -5.9724 47 1 3.0211 -3.8238 -4.3108 48 1 3.7451 -2.3424 -4.9880 49 1 4.6015 -2.6769 -2.7232 50 1 2.9454 -2.8215 -2.0861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004518950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = -86.896910 kcal Electronic energy + Delta-G solvation = -33116.926810 eV Core-core repulsion = 28866.736113 eV Total energy + Delta-G solvation = -4250.190696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.05172 -40.27853 -39.16101 -38.30865 -36.39061 -32.97942 -32.54393 -31.92935 -30.71018 -29.96087 -29.38632 -28.00249 -25.03720 -24.25722 -23.43393 -22.99952 -22.26315 -20.39240 -20.26012 -19.65342 -18.86691 -17.77766 -17.05623 -16.56841 -16.28086 -15.89985 -15.67441 -15.54073 -15.12492 -14.77904 -14.68069 -14.09974 -13.98037 -13.67799 -13.40662 -13.32819 -13.32131 -12.97007 -12.78359 -12.58382 -12.26809 -12.05776 -11.96544 -11.91374 -11.64643 -11.42622 -11.41822 -11.14426 -11.08440 -10.71239 -10.59815 -10.48543 -10.42096 -10.31916 -10.10651 -10.02572 -9.79691 -9.61485 -9.57766 -9.24184 -8.41365 -8.28147 -6.69320 -6.01618 -3.49067 2.46833 2.96378 3.26372 3.42737 3.47519 3.56341 3.85091 4.16456 4.36810 4.46283 4.47547 4.84424 4.88497 4.98415 5.05766 5.19176 5.24224 5.30822 5.36700 5.40662 5.42795 5.46237 5.55047 5.58183 5.65306 5.71072 5.77151 5.79769 5.87730 5.93778 6.02378 6.16566 6.19372 6.21218 6.33706 6.36058 6.37786 6.40350 6.59711 6.68048 6.78424 6.83241 6.87139 6.95404 7.07951 7.50644 7.60908 8.02108 8.12556 8.34350 8.86691 9.63029 10.27872 11.12656 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.004259 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.775967 B = 6573.296915 C = 7285.924633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.047 3.953 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.306 1.306 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.129 3.871 11 C -0.136 4.136 12 C -0.129 4.129 13 C 0.149 3.851 14 H 0.034 0.966 15 C -0.082 4.082 16 C -0.153 4.153 17 C 0.114 3.886 18 N -0.585 5.585 19 C 0.507 3.493 20 O -0.525 6.525 21 C 0.073 3.927 22 F -0.176 7.176 23 C -0.172 4.172 24 C 0.046 3.954 25 O -0.364 6.364 26 C 0.035 3.965 27 C 0.092 3.908 28 C -0.115 4.115 29 H 0.265 0.735 30 H 0.025 0.975 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.134 0.866 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.238 -7.282 -12.169 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.155 4.155 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.234 1.234 6 H -0.199 1.199 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.325 5.325 10 C 0.004 3.996 11 C -0.175 4.175 12 C -0.167 4.167 13 C 0.043 3.957 14 H 0.051 0.949 15 C -0.103 4.103 16 C -0.190 4.190 17 C -0.008 4.008 18 N -0.317 5.317 19 C 0.291 3.709 20 O -0.401 6.401 21 C 0.051 3.949 22 F -0.156 7.156 23 C -0.210 4.210 24 C -0.031 4.031 25 O -0.283 6.283 26 C -0.043 4.043 27 C -0.030 4.030 28 C -0.153 4.153 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.132 0.868 47 H 0.104 0.896 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.526 -7.111 -12.278 15.617 hybrid contribution 0.493 1.318 0.285 1.436 sum 7.019 -5.792 -11.993 15.055 Atomic orbital electron populations 1.69788 1.05706 1.26813 1.51783 1.25518 0.95026 0.97621 0.97314 0.87000 0.79559 0.84235 0.77654 1.20500 1.23388 1.19926 1.18365 0.80552 0.93369 1.45096 0.90368 1.44601 1.03447 1.50897 1.33602 1.21742 0.87788 0.93836 0.96217 1.22753 0.98213 0.99979 0.96528 1.22635 0.96516 1.00365 0.97211 1.21255 0.90330 0.95255 0.88875 0.94919 1.21376 0.96486 0.95007 0.97419 1.22571 0.97694 1.01837 0.96935 1.21794 1.02578 0.78249 0.98165 1.48034 1.09035 1.09354 1.65236 1.20253 0.84882 0.87599 0.78179 1.90692 1.23242 1.74678 1.51511 1.22452 0.95601 0.91462 0.85339 1.92922 1.84827 1.85277 1.52594 1.23558 0.96859 1.01968 0.98574 1.23499 0.81944 1.02175 0.95438 1.89176 1.19234 1.39971 1.79894 1.24068 0.98645 0.89908 0.91683 1.22067 0.82684 0.99251 0.99005 1.21741 1.01019 0.97106 0.95474 0.92523 0.95743 0.93597 0.92055 0.91981 0.91251 0.92331 0.93373 0.91905 0.84814 0.92602 0.89375 0.88433 0.86542 0.88049 0.91368 0.90085 0.86846 0.89554 0.91853 0.91685 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.97 55.49 0.78 -25.56 16 2 C 0.05 1.27 3.56 -17.43 -0.06 1.21 16 3 Si 0.88 21.88 23.31 -169.99 -3.96 17.92 16 4 H -0.28 -6.53 5.62 56.52 0.32 -6.21 16 5 H -0.31 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.48 8.18 -15.06 -0.12 -6.60 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 N -0.60 -13.33 1.59 -162.57 -0.26 -13.58 16 10 C 0.13 2.46 7.23 -2.53 -0.02 2.44 16 11 C -0.14 -2.17 7.08 -24.59 -0.17 -2.34 16 12 C -0.13 -2.05 6.30 -24.90 -0.16 -2.21 16 13 C 0.15 2.94 2.10 -66.95 -0.14 2.80 16 14 H 0.03 0.74 3.60 -51.93 -0.19 0.55 16 15 C -0.08 -1.48 1.91 -90.58 -0.17 -1.66 16 16 C -0.15 -3.15 3.85 -26.61 -0.10 -3.25 16 17 C 0.11 2.03 6.44 -3.71 -0.02 2.00 16 18 N -0.58 -9.68 2.98 -173.03 -0.52 -10.20 16 19 C 0.51 8.64 6.73 -10.99 -0.07 8.57 16 20 O -0.52 -10.41 14.70 5.56 0.08 -10.33 16 21 C 0.07 1.03 1.17 -90.20 -0.11 0.93 16 22 F -0.18 -2.75 14.80 2.25 0.03 -2.72 16 23 C -0.17 -2.12 6.52 -25.16 -0.16 -2.28 16 24 C 0.05 0.46 7.63 37.93 0.29 0.75 16 25 O -0.36 -4.36 11.65 -35.23 -0.41 -4.77 16 26 C 0.03 0.39 6.09 37.93 0.23 0.62 16 27 C 0.09 1.29 5.60 -3.93 -0.02 1.27 16 28 C -0.12 -1.88 4.90 -26.83 -0.13 -2.01 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.97 6.15 -51.93 -0.32 0.65 16 35 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.05 0.77 8.14 -51.94 -0.42 0.35 16 37 H 0.06 1.37 5.70 -51.93 -0.30 1.07 16 38 H 0.13 3.34 4.56 -51.93 -0.24 3.11 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.73 7.00 -51.93 -0.36 1.36 16 41 H 0.10 1.13 8.06 -51.93 -0.42 0.71 16 42 H 0.12 1.56 6.51 -51.93 -0.34 1.22 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.84 7.87 -51.93 -0.41 0.44 16 46 H 0.11 1.11 7.05 -51.93 -0.37 0.75 16 47 H 0.09 1.11 3.75 -51.93 -0.19 0.92 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.93 6.40 -51.93 -0.33 0.60 16 50 H 0.09 1.79 7.25 -51.93 -0.38 1.41 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -30.70 359.83 -7.49 -38.20 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.71 Total: 5.38 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.95 Total: 0.23 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.00 Total: -49.34 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.33 Total: -15.10 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.03 Total: -2.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -3.96 Total: 17.92 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.70 -7.49 -38.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004518950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.702 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds