Wall clock time and date at job start Sat Apr 11 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48498 * 109.47120 * 266.65801 * 3 2 1 5 5 H 1.48497 * 109.47304 * 26.66046 * 3 2 1 6 6 H 1.48500 * 109.46833 * 146.66380 * 3 2 1 7 7 C 1.38817 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00026 * 347.08673 * 7 2 1 9 9 N 1.36932 * 120.00080 * 167.08899 * 7 2 1 10 10 C 1.47423 * 125.64961 * 138.10929 * 9 7 2 11 11 C 1.54906 * 104.83441 * 204.14766 * 10 9 7 12 12 C 1.55151 * 101.58293 * 322.99158 * 11 10 9 13 13 C 1.47017 * 125.64912 * 318.13472 * 9 7 2 14 14 H 1.09002 * 110.01409 * 59.42794 * 13 9 7 15 15 C 1.53005 * 109.88444 * 298.33601 * 13 9 7 16 16 C 1.53037 * 109.45872 * 68.39721 * 15 13 9 17 17 C 1.53193 * 109.31280 * 178.61703 * 16 15 13 18 18 N 1.46922 * 108.77634 * 54.64035 * 17 16 15 19 19 C 1.34769 * 120.63590 * 126.36754 * 18 17 16 20 20 O 1.21281 * 120.00071 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.00365 * 179.97438 * 19 18 17 22 22 F 1.39899 * 110.45343 * 54.29833 * 21 19 18 23 23 C 1.54505 * 110.51241 * 176.90509 * 21 19 18 24 24 C 1.54479 * 104.06514 * 118.78381 * 23 21 19 25 25 O 1.44427 * 104.80325 * 23.97707 * 24 23 21 26 26 C 1.44426 * 105.27437 * 319.49222 * 25 24 23 27 27 C 1.46933 * 118.73518 * 306.63972 * 18 17 16 28 28 C 1.52763 * 109.00548 * 53.31157 * 27 18 17 29 29 H 0.97001 * 119.99671 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.36993 * 85.30557 * 10 9 7 31 31 H 1.09005 * 110.45874 * 323.03534 * 10 9 7 32 32 H 1.08998 * 111.01029 * 204.91282 * 11 10 9 33 33 H 1.09007 * 111.00010 * 81.06254 * 11 10 9 34 34 H 1.08993 * 110.72041 * 277.13788 * 12 11 10 35 35 H 1.09008 * 110.87473 * 153.93140 * 12 11 10 36 36 H 1.08989 * 109.46248 * 188.37457 * 15 13 9 37 37 H 1.09001 * 109.49883 * 58.66258 * 16 15 13 38 38 H 1.09005 * 109.52777 * 298.58754 * 16 15 13 39 39 H 1.08995 * 109.58456 * 294.84992 * 17 16 15 40 40 H 1.09004 * 109.70284 * 174.49534 * 17 16 15 41 41 H 1.09005 * 110.50930 * 237.42691 * 23 21 19 42 42 H 1.09001 * 110.51106 * 0.13653 * 23 21 19 43 43 H 1.08998 * 110.37454 * 142.80427 * 24 23 21 44 44 H 1.08999 * 110.37003 * 265.03619 * 24 23 21 45 45 H 1.09006 * 110.37196 * 281.68078 * 26 25 24 46 46 H 1.09001 * 110.37778 * 159.34176 * 26 25 24 47 47 H 1.08995 * 109.58494 * 173.14375 * 27 18 17 48 48 H 1.09001 * 109.58824 * 293.57273 * 27 18 17 49 49 H 1.09007 * 109.56370 * 185.55147 * 28 27 18 50 50 H 1.09001 * 109.38768 * 65.51773 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5684 2.0055 -1.3977 5 1 1.4143 2.6720 0.6282 6 1 3.5107 1.4614 0.7694 7 6 2.0103 -1.2022 -0.0005 8 1 1.4907 -2.1258 0.2081 9 7 3.3536 -1.2172 -0.2655 10 6 4.3610 -2.0237 0.4472 11 6 5.6958 -1.2656 0.2387 12 6 5.5374 -0.7502 -1.2161 13 6 4.0302 -0.4311 -1.3075 14 1 3.8656 0.6330 -1.1380 15 6 3.4974 -0.8267 -2.6861 16 6 2.0442 -0.3664 -2.8224 17 6 1.5251 -0.7334 -4.2161 18 7 1.7246 -2.1730 -4.4312 19 6 0.6954 -2.9616 -4.7987 20 8 -0.4084 -2.4843 -4.9554 21 6 0.9163 -4.4365 -5.0161 22 9 1.5030 -5.0148 -3.8853 23 6 -0.4173 -5.1397 -5.3536 24 6 -0.1877 -5.7222 -6.7659 25 8 1.2453 -5.8638 -6.8781 26 6 1.7941 -4.6772 -6.2643 27 6 3.0665 -2.7377 -4.2321 28 6 3.5695 -2.3472 -2.8436 29 1 -0.4850 0.8401 -0.0004 30 1 4.4211 -3.0231 0.0162 31 1 4.1202 -2.0831 1.5086 32 1 6.5465 -1.9418 0.3232 33 1 5.7872 -0.4357 0.9395 34 1 5.8116 -1.5252 -1.9317 35 1 6.1324 0.1490 -1.3765 36 1 4.1024 -0.3527 -3.4590 37 1 1.9905 0.7138 -2.6868 38 1 1.4336 -0.8588 -2.0654 39 1 2.0754 -0.1714 -4.9706 40 1 0.4633 -0.4971 -4.2868 41 1 -0.6196 -5.9380 -4.6395 42 1 -1.2361 -4.4203 -5.3657 43 1 -0.6734 -6.6935 -6.8593 44 1 -0.5635 -5.0361 -7.5249 45 1 1.7240 -3.8300 -6.9465 46 1 2.8307 -4.8457 -5.9724 47 1 3.0211 -3.8238 -4.3108 48 1 3.7451 -2.3424 -4.9880 49 1 4.6015 -2.6769 -2.7232 50 1 2.9454 -2.8215 -2.0861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004518950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:54 Heat of formation + Delta-G solvation = -107.495029 kcal Electronic energy + Delta-G solvation = -33117.820011 eV Core-core repulsion = 28866.736113 eV Total energy + Delta-G solvation = -4251.083898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -49.23605 -41.56405 -40.41762 -39.52347 -37.79871 -34.78227 -34.11685 -32.98788 -32.04196 -31.69817 -30.41233 -29.36799 -26.55162 -25.84851 -24.52276 -24.27865 -23.44305 -21.87819 -21.63136 -21.16127 -20.21667 -19.06297 -18.33901 -18.10866 -17.58317 -17.36125 -16.96389 -16.66089 -16.45835 -16.08365 -15.82276 -15.34791 -15.28721 -15.18560 -15.08710 -14.93721 -14.71391 -14.29066 -14.06989 -13.76987 -13.68166 -13.55170 -13.39260 -13.10241 -12.99442 -12.87119 -12.72473 -12.50188 -12.37009 -12.14935 -12.11974 -12.02293 -11.94947 -11.82032 -11.63634 -11.47257 -11.15271 -10.99826 -10.90509 -10.76388 -10.30992 -9.72568 -8.56039 -8.16379 -5.58249 1.15164 1.25696 1.36054 1.45719 1.72840 2.40105 2.65367 2.76391 3.13041 3.15606 3.31708 3.45261 3.51831 3.81652 3.90961 3.94466 4.00299 4.04740 4.15402 4.20583 4.24888 4.32222 4.39549 4.44072 4.44968 4.53853 4.58787 4.69361 4.69685 4.73114 4.79327 4.82887 4.83867 4.86132 4.97273 5.05504 5.11025 5.16796 5.26185 5.35626 5.38464 5.47973 5.50326 5.54092 5.65323 5.83707 6.05752 6.21075 6.21178 6.81042 6.94750 7.59493 8.29609 9.03085 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.004259 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.775967 B = 6573.296915 C = 7285.924633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.939 3.061 4 H -0.258 1.258 5 H -0.321 1.321 6 H -0.270 1.270 7 C -0.221 4.221 8 H 0.029 0.971 9 N -0.613 5.613 10 C 0.121 3.879 11 C -0.125 4.125 12 C -0.119 4.119 13 C 0.136 3.864 14 H 0.010 0.990 15 C -0.080 4.080 16 C -0.149 4.149 17 C 0.119 3.881 18 N -0.587 5.587 19 C 0.497 3.503 20 O -0.565 6.565 21 C 0.069 3.931 22 F -0.187 7.187 23 C -0.175 4.175 24 C 0.051 3.949 25 O -0.373 6.373 26 C 0.043 3.957 27 C 0.091 3.909 28 C -0.107 4.107 29 H 0.259 0.741 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.135 0.865 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.097 0.903 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.651 -7.987 -14.797 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.185 1.185 5 H -0.251 1.251 6 H -0.195 1.195 7 C -0.351 4.351 8 H 0.046 0.954 9 N -0.339 5.339 10 C -0.003 4.003 11 C -0.163 4.163 12 C -0.156 4.156 13 C 0.031 3.969 14 H 0.027 0.973 15 C -0.100 4.100 16 C -0.187 4.187 17 C -0.003 4.003 18 N -0.318 5.318 19 C 0.283 3.717 20 O -0.444 6.444 21 C 0.047 3.953 22 F -0.168 7.168 23 C -0.214 4.214 24 C -0.025 4.025 25 O -0.291 6.291 26 C -0.035 4.035 27 C -0.029 4.029 28 C -0.145 4.145 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.144 0.856 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.153 0.847 47 H 0.117 0.883 48 H 0.125 0.875 49 H 0.116 0.884 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.015 -7.842 -14.912 20.130 hybrid contribution -0.924 1.434 1.173 2.071 sum 10.091 -6.408 -13.739 18.211 Atomic orbital electron populations 1.69932 1.07513 1.26977 1.55112 1.25904 0.95210 1.00246 0.97928 0.86107 0.77977 0.80478 0.78447 1.18466 1.25079 1.19509 1.17992 0.82694 0.91340 1.43043 0.95381 1.44668 1.02389 1.51432 1.35457 1.21894 0.89000 0.94448 0.94999 1.22700 0.97089 0.99895 0.96590 1.22658 0.93051 1.02368 0.97548 1.21473 0.93265 0.93388 0.88798 0.97288 1.21391 0.94664 0.96459 0.97506 1.22339 0.99263 0.99993 0.97090 1.21618 1.01207 0.79856 0.97610 1.48177 1.10211 1.08786 1.64601 1.20871 0.84358 0.88988 0.77526 1.90670 1.24763 1.75746 1.53237 1.22604 0.97353 0.89181 0.86120 1.92897 1.85076 1.85196 1.53619 1.23597 0.95654 1.01567 1.00539 1.23613 0.81415 1.03668 0.93791 1.89169 1.19985 1.40217 1.79733 1.24133 0.98891 0.90312 0.90121 1.22313 0.81688 1.00241 0.98707 1.21636 1.01976 0.95335 0.95560 0.93159 0.94680 0.95348 0.88115 0.92857 0.88340 0.90011 0.89623 0.93833 0.89984 0.88883 0.92444 0.88201 0.88252 0.85610 0.90238 0.88805 0.84736 0.88333 0.87456 0.88438 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.71 13.97 21.65 0.30 -59.40 16 2 C 0.00 0.23 3.56 84.86 0.30 0.53 16 3 Si 0.94 46.74 23.31 68.60 1.60 48.33 16 4 H -0.26 -11.90 5.62 99.48 0.56 -11.34 16 5 H -0.32 -16.64 7.11 99.48 0.71 -15.93 16 6 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.22 -12.32 8.18 84.04 0.69 -11.63 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 N -0.61 -27.33 1.59 -668.25 -1.07 -28.40 16 10 C 0.12 4.45 7.23 86.85 0.63 5.08 16 11 C -0.12 -3.45 7.08 31.98 0.23 -3.23 16 12 C -0.12 -3.13 6.30 31.78 0.20 -2.93 16 13 C 0.14 5.05 2.10 45.34 0.10 5.14 16 14 H 0.01 0.41 3.60 -2.39 -0.01 0.40 16 15 C -0.08 -2.67 1.91 -10.77 -0.02 -2.69 16 16 C -0.15 -6.17 3.85 30.67 0.12 -6.06 16 17 C 0.12 4.22 6.44 86.36 0.56 4.78 16 18 N -0.59 -18.80 2.98 -819.74 -2.44 -21.24 16 19 C 0.50 17.04 6.73 87.66 0.59 17.63 16 20 O -0.56 -23.45 14.70 -3.03 -0.04 -23.49 16 21 C 0.07 1.89 1.17 -10.52 -0.01 1.87 16 22 F -0.19 -5.75 14.80 44.97 0.67 -5.09 16 23 C -0.18 -4.29 6.52 31.61 0.21 -4.08 16 24 C 0.05 0.93 7.63 72.48 0.55 1.48 16 25 O -0.37 -7.81 11.65 -148.98 -1.74 -9.55 16 26 C 0.04 0.84 6.09 72.49 0.44 1.29 16 27 C 0.09 2.23 5.60 86.22 0.48 2.71 16 28 C -0.11 -3.18 4.90 30.53 0.15 -3.03 16 29 H 0.26 15.74 8.31 -92.71 -0.77 14.96 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.10 2.06 6.15 -2.39 -0.01 2.04 16 35 H 0.08 1.86 8.14 -2.38 -0.02 1.85 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.92 5.70 -2.39 -0.01 1.90 16 38 H 0.08 4.33 4.56 -2.38 -0.01 4.32 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.06 2.37 7.00 -2.38 -0.02 2.35 16 41 H 0.10 2.33 8.06 -2.38 -0.02 2.31 16 42 H 0.10 2.78 6.51 -2.39 -0.02 2.77 16 43 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.64 7.87 -2.38 -0.02 1.62 16 46 H 0.13 2.06 7.05 -2.39 -0.02 2.04 16 47 H 0.10 2.20 3.75 -2.39 -0.01 2.19 16 48 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.10 2.26 6.40 -2.38 -0.02 2.25 16 50 H 0.04 1.63 7.25 -2.39 -0.02 1.61 16 Total: -1.00 -75.07 359.83 3.29 -71.77 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.81 Total: 20.20 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.20 Total: 6.86 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -3.20 Total: -109.04 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.78 Total: -33.04 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.67 Total: -5.09 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.60 Total: 48.33 kcal Total: -75.07 3.29 -71.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004518950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.722 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds