Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48503 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47094 * 299.99676 * 3 2 1 6 6 H 1.48502 * 109.47144 * 59.99778 * 3 2 1 7 7 C 1.38812 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00026 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99897 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.06136 * 322.60771 * 10 9 7 12 12 C 1.53726 * 109.91588 * 201.40948 * 10 9 7 13 13 C 1.54109 * 106.67332 * 241.53118 * 12 10 9 14 14 C 1.54451 * 104.73133 * 336.58750 * 13 12 10 15 15 H 1.08999 * 113.74577 * 272.41834 * 14 13 12 16 16 C 1.54889 * 108.83566 * 143.49696 * 14 13 12 17 17 N 1.47359 * 105.01385 * 288.83418 * 16 14 13 18 18 C 1.34768 * 125.70351 * 155.08976 * 17 16 14 19 19 O 1.21284 * 119.99867 * 183.93023 * 18 17 16 20 20 C 1.50700 * 120.00339 * 3.92855 * 18 17 16 21 21 C 1.53003 * 109.54252 * 290.64275 * 20 18 17 22 22 F 1.39904 * 109.47063 * 294.48181 * 21 20 18 23 23 C 1.53198 * 109.61332 * 50.85682 * 20 18 17 24 24 C 1.53095 * 109.14848 * 62.94679 * 23 20 18 25 25 O 1.42896 * 109.42619 * 57.60128 * 24 23 20 26 26 C 1.42905 * 114.09765 * 298.83387 * 25 24 23 27 27 C 1.53096 * 109.41152 * 61.16166 * 26 25 24 28 28 C 1.47037 * 108.59305 * 334.82112 * 17 16 14 29 29 C 1.53914 * 109.91344 * 83.79968 * 10 9 7 30 30 H 1.09004 * 113.49556 * 264.65583 * 29 10 9 31 31 H 0.97006 * 119.99933 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00374 * 359.97438 * 9 7 2 33 33 H 1.09000 * 110.01734 * 122.22107 * 12 10 9 34 34 H 1.09002 * 110.05600 * 0.85538 * 12 10 9 35 35 H 1.09004 * 110.37824 * 217.78024 * 13 12 10 36 36 H 1.08995 * 110.48132 * 95.45399 * 13 12 10 37 37 H 1.09003 * 110.45272 * 169.91467 * 16 14 13 38 38 H 1.09004 * 110.28959 * 47.66481 * 16 14 13 39 39 H 1.09004 * 109.46825 * 54.47691 * 21 20 18 40 40 H 1.08994 * 109.47533 * 174.47493 * 21 20 18 41 41 H 1.08994 * 109.54257 * 303.03587 * 23 20 18 42 42 H 1.09000 * 109.52106 * 182.83740 * 23 20 18 43 43 H 1.09002 * 109.47576 * 297.60822 * 24 23 20 44 44 H 1.09000 * 109.47776 * 177.59256 * 24 23 20 45 45 H 1.08998 * 109.48279 * 181.13984 * 26 25 24 46 46 H 1.08994 * 109.48438 * 301.16556 * 26 25 24 47 47 H 1.08996 * 109.52427 * 62.29325 * 27 26 25 48 48 H 1.08999 * 109.52347 * 182.41976 * 27 26 25 49 49 H 1.08994 * 109.82543 * 122.04835 * 28 17 16 50 50 H 1.09000 * 109.83002 * 242.92832 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9493 -3.5739 -0.6212 12 6 1.1544 -4.7831 -0.5270 13 6 1.0083 -5.8053 0.6169 14 6 2.2512 -5.5803 1.5058 15 1 3.1224 -6.1577 1.1965 16 6 1.8471 -5.7729 2.9886 17 7 1.0155 -4.6004 3.3130 18 6 0.0772 -4.5447 4.2788 19 8 -0.5986 -3.5463 4.4108 20 6 -0.1324 -5.7229 5.1948 21 6 -0.7478 -6.8809 4.4065 22 9 -2.0318 -6.5245 3.9803 23 6 1.2119 -6.1616 5.7841 24 6 1.7821 -5.0241 6.6356 25 8 0.8457 -4.6811 7.6590 26 6 -0.4136 -4.2186 7.1664 27 6 -1.0722 -5.3236 6.3365 28 6 1.3852 -3.4995 2.4112 29 6 2.4554 -4.0327 1.4392 30 1 3.4654 -3.7216 1.7064 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3880 0.0005 33 1 1.6157 -5.2564 -1.3938 34 1 0.1771 -4.3828 -0.7969 35 1 1.0039 -6.8206 0.2204 36 1 0.0968 -5.6157 1.1837 37 1 2.7320 -5.7968 3.6245 38 1 1.2703 -6.6902 3.1070 39 1 -0.1253 -7.1014 3.5393 40 1 -0.8083 -7.7628 5.0440 41 1 1.9055 -6.3948 4.9763 42 1 1.0661 -7.0445 6.4065 43 1 1.9657 -4.1546 6.0045 44 1 2.7181 -5.3459 7.0922 45 1 -1.0595 -3.9603 8.0056 46 1 -0.2588 -3.3384 6.5425 47 1 -1.2642 -6.1896 6.9699 48 1 -2.0128 -4.9581 5.9243 49 1 0.5095 -3.1696 1.8523 50 1 1.7897 -2.6683 2.9888 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026361666.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -103.529773 kcal Electronic energy + Delta-G solvation = -32911.504983 eV Core-core repulsion = 28660.593031 eV Total energy + Delta-G solvation = -4250.911952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -47.80779 -41.11843 -39.51970 -37.73343 -35.36727 -34.51727 -33.27184 -31.25976 -30.92321 -29.29212 -28.48596 -27.99656 -25.55730 -24.61757 -23.75324 -23.12261 -22.88466 -21.28971 -19.89074 -18.85810 -18.71348 -17.42664 -16.81216 -16.73362 -16.46904 -16.01003 -15.89329 -15.57834 -15.28625 -14.99541 -14.79925 -14.42492 -14.14029 -13.85454 -13.61861 -13.54394 -13.34826 -13.04844 -12.91280 -12.52461 -12.48066 -12.32199 -12.08103 -11.65586 -11.49861 -11.42940 -11.33672 -11.06291 -10.90819 -10.73477 -10.71224 -10.60901 -10.46785 -10.37065 -10.29085 -10.20542 -9.90589 -9.72290 -9.63515 -9.35400 -8.89862 -8.31603 -6.97373 -5.77494 -3.07571 2.71857 3.10302 3.43131 3.48165 3.51234 3.75696 4.06349 4.08176 4.35261 4.42232 4.54468 4.58359 4.69873 4.75146 4.79871 4.89270 5.01354 5.06395 5.21604 5.29471 5.36300 5.37980 5.41091 5.44417 5.51601 5.54431 5.56915 5.59650 5.66666 5.76604 5.78463 5.85362 5.92282 5.93752 5.99462 6.03480 6.07351 6.27422 6.30720 6.49173 6.53607 6.67520 6.80678 6.82278 6.97682 7.08006 7.69986 7.74690 8.34440 8.40035 9.51381 10.07335 10.40765 11.44496 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.004057 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.330458 B = 6900.750416 C = 7815.954823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.181 3.819 11 H 0.052 0.948 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.108 4.108 15 H 0.101 0.899 16 C 0.095 3.905 17 N -0.612 5.612 18 C 0.533 3.467 19 O -0.522 6.522 20 C -0.109 4.109 21 C 0.070 3.930 22 F -0.206 7.206 23 C -0.156 4.156 24 C 0.061 3.939 25 O -0.384 6.384 26 C 0.053 3.947 27 C -0.129 4.129 28 C 0.129 3.871 29 C -0.116 4.116 30 H 0.082 0.918 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.787 -19.604 10.275 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.070 3.930 11 H 0.070 0.930 12 C -0.166 4.166 13 C -0.152 4.152 14 C -0.127 4.127 15 H 0.119 0.881 16 C -0.028 4.028 17 N -0.346 5.346 18 C 0.320 3.680 19 O -0.397 6.397 20 C -0.113 4.113 21 C 0.015 3.985 22 F -0.187 7.187 23 C -0.194 4.194 24 C -0.016 4.016 25 O -0.302 6.302 26 C -0.023 4.023 27 C -0.167 4.167 28 C 0.008 3.992 29 C -0.139 4.139 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.220 0.780 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.456 -18.860 10.555 21.887 hybrid contribution 0.076 0.956 -0.313 1.008 sum 3.531 -17.905 10.242 20.927 Atomic orbital electron populations 1.69665 1.05107 1.25674 1.57009 1.24741 0.95423 0.97683 1.02624 0.86181 0.78773 0.84380 0.77200 1.20580 1.21886 1.21866 1.19230 0.90952 0.84051 1.43380 0.91147 1.42652 1.05663 0.99758 1.87839 1.20691 0.94324 0.86411 0.91590 0.93041 1.22364 1.00988 0.96062 0.97186 1.22241 0.97409 0.98631 0.96962 1.23273 0.98583 0.97914 0.92910 0.88084 1.22621 0.94541 0.88973 0.96641 1.48599 1.36840 1.14889 1.34302 1.19741 0.79387 0.88574 0.80343 1.90733 1.45303 1.33209 1.70461 1.21513 0.98255 0.95248 0.96288 1.22193 0.80492 0.96379 0.99465 1.92818 1.40777 1.93545 1.91537 1.22510 0.95302 1.00402 1.01159 1.22517 0.92409 0.96224 0.90457 1.87892 1.24400 1.85585 1.32357 1.22751 0.84500 0.96395 0.98672 1.21999 0.99194 1.00170 0.95312 1.21965 0.99750 0.87358 0.90121 1.23583 0.98186 0.92536 0.99562 0.89990 0.93454 0.78005 0.92077 0.91295 0.92267 0.91643 0.91318 0.90944 0.89724 0.89729 0.88893 0.89705 0.92944 0.88428 0.88682 0.91038 0.90495 0.89186 0.88950 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.25 -6.56 9.95 -15.06 -0.15 -6.71 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.08 3.53 -52.60 -0.19 -17.26 16 10 C 0.18 3.30 3.25 -67.07 -0.22 3.08 16 11 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 12 C -0.13 -1.96 6.55 -25.77 -0.17 -2.13 16 13 C -0.11 -1.45 5.86 -25.39 -0.15 -1.60 16 14 C -0.11 -1.24 4.27 -87.12 -0.37 -1.61 16 15 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 16 C 0.10 1.00 4.13 -2.58 -0.01 0.99 16 17 N -0.61 -9.16 2.81 -170.72 -0.48 -9.64 16 18 C 0.53 8.59 4.96 -10.99 -0.05 8.53 16 19 O -0.52 -10.89 14.59 5.55 0.08 -10.81 16 20 C -0.11 -1.28 0.36 -155.47 -0.06 -1.33 16 21 C 0.07 0.70 6.23 37.16 0.23 0.93 16 22 F -0.21 -2.86 16.54 2.25 0.04 -2.83 16 23 C -0.16 -1.40 4.67 -26.58 -0.12 -1.53 16 24 C 0.06 0.66 6.62 37.21 0.25 0.91 16 25 O -0.38 -4.96 10.77 -35.23 -0.38 -5.34 16 26 C 0.05 0.69 6.56 37.21 0.24 0.94 16 27 C -0.13 -1.56 4.33 -26.59 -0.12 -1.67 16 28 C 0.13 2.40 5.41 -3.18 -0.02 2.38 16 29 C -0.12 -1.83 3.95 -87.83 -0.35 -2.18 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 32 H 0.38 10.05 6.86 -40.82 -0.28 9.77 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.20 7.57 -51.93 -0.39 0.80 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.96 7.30 -51.93 -0.38 0.58 16 37 H 0.07 0.60 6.88 -51.93 -0.36 0.25 16 38 H 0.07 0.61 4.51 -51.93 -0.23 0.38 16 39 H 0.08 0.75 5.04 -51.93 -0.26 0.49 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.70 4.12 -51.93 -0.21 0.48 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.68 7.38 -51.93 -0.38 0.30 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.07 1.14 6.17 -51.93 -0.32 0.82 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 1.24 7.55 -51.93 -0.39 0.85 16 49 H 0.09 2.10 6.17 -51.93 -0.32 1.78 16 50 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -32.99 369.98 -8.54 -41.53 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.73 Total: 10.07 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.16 Total: -1.32 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.06 Total: -54.25 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.30 Total: -16.15 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.99 -8.54 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361666.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.999 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds