Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48503 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47094 * 299.99676 * 3 2 1 6 6 H 1.48502 * 109.47144 * 59.99778 * 3 2 1 7 7 C 1.38812 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00026 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99897 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.06136 * 322.60771 * 10 9 7 12 12 C 1.53726 * 109.91588 * 201.40948 * 10 9 7 13 13 C 1.54109 * 106.67332 * 241.53118 * 12 10 9 14 14 C 1.54451 * 104.73133 * 336.58750 * 13 12 10 15 15 H 1.08999 * 113.74577 * 272.41834 * 14 13 12 16 16 C 1.54889 * 108.83566 * 143.49696 * 14 13 12 17 17 N 1.47359 * 105.01385 * 288.83418 * 16 14 13 18 18 C 1.34768 * 125.70351 * 155.08976 * 17 16 14 19 19 O 1.21284 * 119.99867 * 183.93023 * 18 17 16 20 20 C 1.50700 * 120.00339 * 3.92855 * 18 17 16 21 21 C 1.53003 * 109.54252 * 290.64275 * 20 18 17 22 22 F 1.39904 * 109.47063 * 294.48181 * 21 20 18 23 23 C 1.53198 * 109.61332 * 50.85682 * 20 18 17 24 24 C 1.53095 * 109.14848 * 62.94679 * 23 20 18 25 25 O 1.42896 * 109.42619 * 57.60128 * 24 23 20 26 26 C 1.42905 * 114.09765 * 298.83387 * 25 24 23 27 27 C 1.53096 * 109.41152 * 61.16166 * 26 25 24 28 28 C 1.47037 * 108.59305 * 334.82112 * 17 16 14 29 29 C 1.53914 * 109.91344 * 83.79968 * 10 9 7 30 30 H 1.09004 * 113.49556 * 264.65583 * 29 10 9 31 31 H 0.97006 * 119.99933 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00374 * 359.97438 * 9 7 2 33 33 H 1.09000 * 110.01734 * 122.22107 * 12 10 9 34 34 H 1.09002 * 110.05600 * 0.85538 * 12 10 9 35 35 H 1.09004 * 110.37824 * 217.78024 * 13 12 10 36 36 H 1.08995 * 110.48132 * 95.45399 * 13 12 10 37 37 H 1.09003 * 110.45272 * 169.91467 * 16 14 13 38 38 H 1.09004 * 110.28959 * 47.66481 * 16 14 13 39 39 H 1.09004 * 109.46825 * 54.47691 * 21 20 18 40 40 H 1.08994 * 109.47533 * 174.47493 * 21 20 18 41 41 H 1.08994 * 109.54257 * 303.03587 * 23 20 18 42 42 H 1.09000 * 109.52106 * 182.83740 * 23 20 18 43 43 H 1.09002 * 109.47576 * 297.60822 * 24 23 20 44 44 H 1.09000 * 109.47776 * 177.59256 * 24 23 20 45 45 H 1.08998 * 109.48279 * 181.13984 * 26 25 24 46 46 H 1.08994 * 109.48438 * 301.16556 * 26 25 24 47 47 H 1.08996 * 109.52427 * 62.29325 * 27 26 25 48 48 H 1.08999 * 109.52347 * 182.41976 * 27 26 25 49 49 H 1.08994 * 109.82543 * 122.04835 * 28 17 16 50 50 H 1.09000 * 109.83002 * 242.92832 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9493 -3.5739 -0.6212 12 6 1.1544 -4.7831 -0.5270 13 6 1.0083 -5.8053 0.6169 14 6 2.2512 -5.5803 1.5058 15 1 3.1224 -6.1577 1.1965 16 6 1.8471 -5.7729 2.9886 17 7 1.0155 -4.6004 3.3130 18 6 0.0772 -4.5447 4.2788 19 8 -0.5986 -3.5463 4.4108 20 6 -0.1324 -5.7229 5.1948 21 6 -0.7478 -6.8809 4.4065 22 9 -2.0318 -6.5245 3.9803 23 6 1.2119 -6.1616 5.7841 24 6 1.7821 -5.0241 6.6356 25 8 0.8457 -4.6811 7.6590 26 6 -0.4136 -4.2186 7.1664 27 6 -1.0722 -5.3236 6.3365 28 6 1.3852 -3.4995 2.4112 29 6 2.4554 -4.0327 1.4392 30 1 3.4654 -3.7216 1.7064 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3880 0.0005 33 1 1.6157 -5.2564 -1.3938 34 1 0.1771 -4.3828 -0.7969 35 1 1.0039 -6.8206 0.2204 36 1 0.0968 -5.6157 1.1837 37 1 2.7320 -5.7968 3.6245 38 1 1.2703 -6.6902 3.1070 39 1 -0.1253 -7.1014 3.5393 40 1 -0.8083 -7.7628 5.0440 41 1 1.9055 -6.3948 4.9763 42 1 1.0661 -7.0445 6.4065 43 1 1.9657 -4.1546 6.0045 44 1 2.7181 -5.3459 7.0922 45 1 -1.0595 -3.9603 8.0056 46 1 -0.2588 -3.3384 6.5425 47 1 -1.2642 -6.1896 6.9699 48 1 -2.0128 -4.9581 5.9243 49 1 0.5095 -3.1696 1.8523 50 1 1.7897 -2.6683 2.9888 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026361666.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -126.573079 kcal Electronic energy + Delta-G solvation = -32912.504216 eV Core-core repulsion = 28660.593031 eV Total energy + Delta-G solvation = -4251.911184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -48.72972 -42.24258 -40.66667 -38.93862 -36.80550 -35.67506 -34.86391 -32.68988 -32.18704 -30.51156 -29.89777 -28.91870 -27.04236 -25.82478 -25.01737 -24.53937 -23.88259 -22.36022 -21.03365 -20.22116 -19.88072 -19.34394 -17.88920 -17.75113 -17.43243 -17.09422 -16.96161 -16.71248 -16.52323 -16.48331 -15.97657 -15.62657 -15.46492 -15.09137 -14.95846 -14.68883 -14.65471 -14.51223 -14.12236 -13.71399 -13.58984 -13.37180 -13.23498 -13.12868 -12.96895 -12.60353 -12.50673 -12.40802 -12.25578 -12.20913 -12.05987 -11.87775 -11.66759 -11.60523 -11.54089 -11.44696 -11.40113 -11.37320 -10.90102 -10.73749 -10.47516 -9.62030 -8.98624 -7.96161 -5.23757 1.41196 1.42918 1.51986 1.52241 1.93220 2.53123 2.84321 3.16262 3.22538 3.35539 3.38435 3.49068 3.59676 3.76727 3.82792 3.89884 3.92863 4.14844 4.22608 4.23722 4.29842 4.33135 4.39003 4.40579 4.42191 4.50577 4.55872 4.62898 4.67524 4.71631 4.74735 4.75375 4.79109 4.85999 4.92396 4.99064 5.02047 5.07281 5.12266 5.17156 5.26394 5.32218 5.45124 5.47262 5.56131 5.58002 6.12835 6.25751 6.56076 7.11948 7.31047 8.09497 8.29485 9.27772 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.004057 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.330458 B = 6900.750416 C = 7815.954823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.294 1.294 6 H -0.303 1.303 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.168 3.832 11 H 0.055 0.945 12 C -0.124 4.124 13 C -0.109 4.109 14 C -0.084 4.084 15 H 0.150 0.850 16 C 0.087 3.913 17 N -0.610 5.610 18 C 0.521 3.479 19 O -0.589 6.589 20 C -0.103 4.103 21 C 0.063 3.937 22 F -0.233 7.233 23 C -0.146 4.146 24 C 0.052 3.948 25 O -0.391 6.391 26 C 0.055 3.945 27 C -0.127 4.127 28 C 0.141 3.859 29 C -0.113 4.113 30 H 0.090 0.910 31 H 0.247 0.753 32 H 0.367 0.633 33 H 0.087 0.913 34 H 0.036 0.964 35 H 0.100 0.900 36 H 0.038 0.962 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.133 0.867 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.017 0.983 44 H 0.129 0.871 45 H 0.107 0.893 46 H 0.027 0.973 47 H 0.112 0.888 48 H 0.061 0.939 49 H 0.040 0.960 50 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.896 -24.870 11.100 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.221 1.221 6 H -0.231 1.231 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.371 5.371 10 C 0.060 3.940 11 H 0.073 0.927 12 C -0.163 4.163 13 C -0.147 4.147 14 C -0.103 4.103 15 H 0.167 0.833 16 C -0.033 4.033 17 N -0.342 5.342 18 C 0.311 3.689 19 O -0.469 6.469 20 C -0.107 4.107 21 C 0.008 3.992 22 F -0.214 7.214 23 C -0.183 4.183 24 C -0.025 4.025 25 O -0.310 6.310 26 C -0.021 4.021 27 C -0.165 4.165 28 C 0.018 3.982 29 C -0.134 4.134 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.199 0.801 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.151 0.849 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.036 0.964 44 H 0.147 0.853 45 H 0.126 0.874 46 H 0.046 0.954 47 H 0.130 0.870 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 6.653 -24.217 11.370 27.569 hybrid contribution -0.856 2.583 -0.569 2.780 sum 5.797 -21.634 10.801 24.866 Atomic orbital electron populations 1.69846 1.06832 1.25600 1.60143 1.25529 0.96148 1.01117 1.04347 0.85179 0.78652 0.80389 0.76261 1.18336 1.22105 1.23140 1.19655 0.91434 0.85154 1.39840 0.90182 1.42873 1.05045 1.01244 1.87913 1.21080 0.94472 0.85085 0.93395 0.92700 1.22315 0.98745 0.95837 0.99356 1.22226 0.96959 0.99715 0.95753 1.23381 0.99491 0.94066 0.93341 0.83277 1.23059 0.95576 0.88149 0.96535 1.48643 1.37030 1.15310 1.33232 1.20821 0.78312 0.89258 0.80538 1.90704 1.47821 1.36188 1.72207 1.21585 1.00259 0.93712 0.95149 1.22583 0.79146 0.96644 1.00788 1.92773 1.42860 1.93870 1.91926 1.22567 0.93408 1.00434 1.01854 1.22756 0.93435 0.95926 0.90370 1.87877 1.24336 1.85551 1.33198 1.22636 0.85336 0.95526 0.98645 1.21985 0.97956 1.00767 0.95764 1.21500 0.98313 0.88097 0.90315 1.23428 0.97082 0.96591 0.96332 0.89182 0.94465 0.80070 0.89408 0.94543 0.88106 0.94326 0.87944 0.87381 0.87986 0.84917 0.86558 0.85850 0.96427 0.85324 0.87447 0.95424 0.87009 0.92012 0.94165 0.96633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.05 13.06 21.65 0.28 -62.77 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 3 Si 0.97 48.03 29.55 68.60 2.03 50.06 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 7 C -0.23 -12.72 9.95 84.03 0.84 -11.88 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.73 -36.74 3.53 -320.32 -1.13 -37.87 16 10 C 0.17 6.12 3.25 45.54 0.15 6.26 16 11 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 12 C -0.12 -3.69 6.55 31.21 0.20 -3.48 16 13 C -0.11 -2.40 5.86 31.46 0.18 -2.22 16 14 C -0.08 -1.53 4.27 -8.53 -0.04 -1.57 16 15 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 16 C 0.09 1.44 4.13 86.86 0.36 1.79 16 17 N -0.61 -18.15 2.81 -812.43 -2.28 -20.43 16 18 C 0.52 17.34 4.96 87.66 0.43 17.77 16 19 O -0.59 -27.22 14.59 -3.04 -0.04 -27.26 16 20 C -0.10 -2.19 0.36 -52.80 -0.02 -2.21 16 21 C 0.06 1.00 6.23 71.98 0.45 1.45 16 22 F -0.23 -6.20 16.54 44.97 0.74 -5.46 16 23 C -0.15 -1.91 4.67 30.69 0.14 -1.77 16 24 C 0.05 1.00 6.62 72.01 0.48 1.48 16 25 O -0.39 -9.64 10.77 -148.98 -1.60 -11.24 16 26 C 0.06 1.49 6.56 72.01 0.47 1.96 16 27 C -0.13 -2.97 4.33 30.68 0.13 -2.83 16 28 C 0.14 5.56 5.41 86.65 0.47 6.03 16 29 C -0.11 -3.42 3.95 -8.99 -0.04 -3.46 16 30 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 31 H 0.25 15.66 8.31 -92.70 -0.77 14.89 16 32 H 0.37 20.85 6.86 -92.71 -0.64 20.22 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.04 1.31 7.57 -2.39 -0.02 1.29 16 35 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.04 1.07 7.30 -2.39 -0.02 1.06 16 37 H 0.10 1.13 6.88 -2.39 -0.02 1.11 16 38 H 0.11 1.10 4.51 -2.39 -0.01 1.09 16 39 H 0.10 1.25 5.04 -2.38 -0.01 1.23 16 40 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.12 0.98 4.12 -2.39 -0.01 0.97 16 42 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.02 0.46 7.38 -2.39 -0.02 0.44 16 44 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.03 0.98 6.17 -2.39 -0.01 0.97 16 47 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.06 1.79 7.55 -2.39 -0.02 1.78 16 49 H 0.04 2.02 6.17 -2.39 -0.01 2.00 16 50 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -85.46 369.98 3.01 -82.45 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.33 Total: 29.44 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 4.68 Total: 3.07 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -3.13 Total: -121.07 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.65 Total: -38.51 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.74 Total: -5.46 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -85.46 3.01 -82.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361666.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.121 kcal (2) G-P(sol) polarization free energy of solvation -85.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds