Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00397 * 2 1 4 4 H 1.48495 * 109.47403 * 270.00108 * 3 2 1 5 5 H 1.48500 * 109.47026 * 30.00480 * 3 2 1 6 6 H 1.48506 * 109.46984 * 150.00106 * 3 2 1 7 7 C 1.38819 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00120 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00047 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.54359 * 36.18024 * 10 9 7 12 12 C 1.55942 * 110.49069 * 273.55162 * 10 9 7 13 13 C 1.56415 * 105.84827 * 233.75359 * 12 10 9 14 14 C 1.51107 * 101.53858 * 335.06678 * 13 12 10 15 15 H 1.09000 * 109.64688 * 290.69467 * 14 13 12 16 16 C 1.50337 * 125.60226 * 156.00989 * 14 13 12 17 17 N 1.49216 * 104.86424 * 215.57674 * 16 14 13 18 18 C 1.34769 * 126.06316 * 187.10494 * 17 16 14 19 19 O 1.21285 * 120.00459 * 175.36533 * 18 17 16 20 20 C 1.50701 * 119.99990 * 355.36045 * 18 17 16 21 21 C 1.52999 * 109.54213 * 305.99144 * 20 18 17 22 22 F 1.39895 * 109.47259 * 306.20590 * 21 20 18 23 23 C 1.53172 * 109.54723 * 185.72298 * 20 18 17 24 24 C 1.53101 * 109.16315 * 297.11672 * 23 20 18 25 25 O 1.42903 * 109.41000 * 302.38633 * 24 23 20 26 26 C 1.42906 * 114.09557 * 61.16440 * 25 24 23 27 27 C 1.53094 * 109.41218 * 298.83333 * 26 25 24 28 28 C 1.49699 * 107.88042 * 7.06487 * 17 16 14 29 29 C 1.50297 * 110.49455 * 158.80933 * 10 9 7 30 30 H 1.08998 * 110.00010 * 38.17090 * 29 10 9 31 31 H 0.96999 * 119.99813 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99359 * 0.02562 * 9 7 2 33 33 H 1.08994 * 110.18866 * 352.86576 * 12 10 9 34 34 H 1.09000 * 110.18655 * 114.63860 * 12 10 9 35 35 H 1.08996 * 110.99922 * 93.09183 * 13 12 10 36 36 H 1.09000 * 110.99747 * 216.93900 * 13 12 10 37 37 H 1.08998 * 110.36384 * 334.42764 * 16 14 13 38 38 H 1.09001 * 110.35919 * 96.73074 * 16 14 13 39 39 H 1.08998 * 109.47183 * 66.21302 * 21 20 18 40 40 H 1.09000 * 109.47133 * 186.20745 * 21 20 18 41 41 H 1.08999 * 109.52695 * 57.01883 * 23 20 18 42 42 H 1.09000 * 109.52357 * 177.20955 * 23 20 18 43 43 H 1.08999 * 109.47965 * 182.41017 * 24 23 20 44 44 H 1.08997 * 109.48043 * 62.37252 * 24 23 20 45 45 H 1.08999 * 109.47702 * 178.85500 * 26 25 24 46 46 H 1.08995 * 109.49234 * 58.82650 * 26 25 24 47 47 H 1.09002 * 109.52391 * 297.70285 * 27 26 25 48 48 H 1.09004 * 109.57169 * 177.54615 * 27 26 25 49 49 H 1.08996 * 110.84859 * 266.94067 * 28 17 16 50 50 H 1.08999 * 110.84214 * 143.32931 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4711 -0.0022 11 1 3.5895 -3.2138 -0.6050 12 6 4.3071 -2.9900 1.4553 13 6 5.8428 -3.2386 1.6183 14 6 6.2652 -3.4696 0.1860 15 1 5.8617 -4.4188 -0.1666 16 6 7.6497 -3.2629 -0.3624 17 7 7.4400 -2.7508 -1.7481 18 6 8.3992 -2.5495 -2.6732 19 8 8.0962 -2.2078 -3.7967 20 6 9.8485 -2.7489 -2.3115 21 6 10.1889 -1.9082 -1.0793 22 9 9.8284 -0.5762 -1.3095 23 6 10.7335 -2.3213 -3.4863 24 6 10.4392 -3.2200 -4.6903 25 8 10.6653 -4.5845 -4.3310 26 6 9.8321 -5.0538 -3.2690 27 6 10.1020 -4.2288 -2.0079 28 6 5.9752 -2.5010 -1.9291 29 6 5.5117 -2.2702 -0.5115 30 1 5.9078 -1.3216 -0.1490 31 1 -0.4850 0.8400 0.0004 32 1 3.8645 -0.3623 -0.0007 33 1 3.9697 -2.2396 2.1701 34 1 3.7581 -3.9205 1.6000 35 1 6.3384 -2.3617 2.0348 36 1 6.0330 -4.1204 2.2301 37 1 8.1888 -2.5284 0.2359 38 1 8.1934 -4.2073 -0.3853 39 1 9.6415 -2.2890 -0.2171 40 1 11.2598 -1.9662 -0.8844 41 1 10.5195 -1.2843 -3.7450 42 1 11.7824 -2.4189 -3.2066 43 1 11.0965 -2.9480 -5.5162 44 1 9.4005 -3.0914 -4.9946 45 1 10.0520 -6.1029 -3.0710 46 1 8.7854 -4.9495 -3.5546 47 1 11.1382 -4.3650 -1.6984 48 1 9.4370 -4.5557 -1.2085 49 1 5.4835 -3.3727 -2.3608 50 1 5.8055 -1.6156 -2.5417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026361670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -90.085592 kcal Electronic energy + Delta-G solvation = -32127.647529 eV Core-core repulsion = 27877.318560 eV Total energy + Delta-G solvation = -4250.328968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -47.97956 -41.31396 -39.92811 -38.01421 -35.71436 -34.84861 -33.51033 -31.50412 -31.24510 -29.81710 -28.94474 -28.12975 -25.80750 -24.60271 -23.95590 -23.06002 -22.62153 -21.45779 -20.46574 -19.51194 -18.88402 -17.62400 -17.05079 -16.81002 -16.68386 -16.46730 -16.14113 -15.80719 -15.37143 -15.01184 -14.89686 -14.76905 -14.42406 -14.18743 -13.94788 -13.80432 -13.54898 -13.28742 -12.82217 -12.78930 -12.62134 -12.38606 -12.19538 -12.04252 -11.86325 -11.70509 -11.58349 -11.34881 -11.24908 -10.97589 -10.87531 -10.83666 -10.73319 -10.53106 -10.43537 -10.11584 -9.94755 -9.89988 -9.61373 -9.48461 -8.97094 -8.79063 -7.31926 -5.80664 -3.16898 2.39106 2.63279 3.35631 3.39324 3.44398 3.59231 3.77372 3.86864 3.99049 4.17453 4.35825 4.48473 4.55014 4.56246 4.66708 4.71604 4.86589 4.87000 4.93503 5.05455 5.11200 5.16863 5.20308 5.25362 5.36012 5.38320 5.42670 5.46847 5.48860 5.51740 5.59434 5.62709 5.72036 5.72605 5.78074 5.87735 5.89506 5.96013 6.02064 6.09763 6.16624 6.28962 6.45615 6.64693 6.88739 6.92866 7.33233 7.95000 7.96080 8.38531 9.16112 9.88825 10.07598 11.37526 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.003166 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.566249 B = 8841.173938 C = 9235.294178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.202 3.798 11 H 0.063 0.937 12 C -0.142 4.142 13 C -0.098 4.098 14 C -0.128 4.128 15 H 0.086 0.914 16 C 0.107 3.893 17 N -0.620 5.620 18 C 0.542 3.458 19 O -0.530 6.530 20 C -0.109 4.109 21 C 0.062 3.938 22 F -0.207 7.207 23 C -0.128 4.128 24 C 0.047 3.953 25 O -0.383 6.383 26 C 0.061 3.939 27 C -0.151 4.151 28 C 0.129 3.871 29 C -0.122 4.122 30 H 0.080 0.920 31 H 0.260 0.740 32 H 0.361 0.639 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.159 -10.920 -0.337 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.092 3.908 11 H 0.081 0.919 12 C -0.183 4.183 13 C -0.137 4.137 14 C -0.147 4.147 15 H 0.104 0.896 16 C -0.014 4.014 17 N -0.355 5.355 18 C 0.330 3.670 19 O -0.406 6.406 20 C -0.113 4.113 21 C 0.007 3.993 22 F -0.188 7.188 23 C -0.166 4.166 24 C -0.029 4.029 25 O -0.302 6.302 26 C -0.016 4.016 27 C -0.188 4.188 28 C 0.008 3.992 29 C -0.142 4.142 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 24.913 -10.844 -1.136 27.194 hybrid contribution 0.347 1.583 0.342 1.657 sum 25.260 -9.260 -0.795 26.916 Atomic orbital electron populations 1.69694 1.05121 1.25884 1.57281 1.24665 0.95197 0.97180 1.01857 0.86591 0.79166 0.85089 0.77897 1.21014 1.21714 1.20384 1.19063 0.80509 0.94709 1.43297 0.89121 1.42855 1.04100 1.01748 1.89943 1.20048 0.88135 0.89561 0.93092 0.91882 1.23759 0.92953 1.01363 1.00242 1.21793 0.97494 1.01001 0.93362 1.22202 0.94096 1.00161 0.98264 0.89611 1.21718 0.98007 0.98820 0.82864 1.49819 1.07781 1.64850 1.13061 1.19803 0.86081 0.76907 0.84223 1.90650 1.82706 1.47219 1.20047 1.21513 0.93789 0.97866 0.98097 1.22314 1.02178 0.77533 0.97294 1.92822 1.93693 1.36312 1.95955 1.22038 0.98525 1.01670 0.94410 1.22920 1.03694 0.80402 0.95879 1.87903 1.61602 1.27501 1.53148 1.22518 0.94862 0.98114 0.86071 1.22394 1.04157 0.92062 1.00205 1.21545 0.78407 1.02003 0.97233 1.22536 0.98602 0.98733 0.94335 0.90173 0.93010 0.80533 0.90637 0.92157 0.91663 0.91824 0.90832 0.90381 0.89221 0.89656 0.89671 0.90357 0.88896 0.89849 0.88313 0.93042 0.89334 0.89301 0.90746 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.97 55.49 0.78 -28.18 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.03 27.73 -169.99 -4.71 17.31 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.25 -6.71 10.46 -15.05 -0.16 -6.87 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.74 -16.77 4.92 -53.20 -0.26 -17.03 16 10 C 0.20 3.52 3.39 -67.71 -0.23 3.29 16 11 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 12 C -0.14 -2.14 6.73 -23.32 -0.16 -2.29 16 13 C -0.10 -1.08 6.73 -25.85 -0.17 -1.25 16 14 C -0.13 -1.35 2.77 -90.22 -0.25 -1.60 16 15 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 16 C 0.11 0.97 5.08 -3.86 -0.02 0.95 16 17 N -0.62 -7.56 3.40 -171.56 -0.58 -8.14 16 18 C 0.54 7.08 4.94 -10.99 -0.05 7.03 16 19 O -0.53 -8.78 14.03 5.55 0.08 -8.70 16 20 C -0.11 -1.03 0.37 -155.48 -0.06 -1.09 16 21 C 0.06 0.51 6.02 37.16 0.22 0.74 16 22 F -0.21 -2.56 16.71 2.25 0.04 -2.52 16 23 C -0.13 -1.26 4.49 -26.59 -0.12 -1.38 16 24 C 0.05 0.51 6.55 37.21 0.24 0.75 16 25 O -0.38 -4.19 10.77 -35.23 -0.38 -4.57 16 26 C 0.06 0.54 6.62 37.21 0.25 0.79 16 27 C -0.15 -1.07 4.81 -26.59 -0.13 -1.19 16 28 C 0.13 1.83 6.80 -3.30 -0.02 1.81 16 29 C -0.12 -1.74 2.40 -90.33 -0.22 -1.96 16 30 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.36 8.18 5.50 -40.82 -0.22 7.95 16 33 H 0.07 1.31 7.98 -51.93 -0.41 0.89 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.61 5.83 -51.93 -0.30 0.31 16 38 H 0.08 0.51 5.33 -51.93 -0.28 0.23 16 39 H 0.09 0.61 4.53 -51.93 -0.24 0.38 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.10 5.60 -51.93 -0.29 0.81 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.54 7.38 -51.93 -0.38 0.16 16 47 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.50 4.77 -51.93 -0.25 0.26 16 49 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -33.43 372.81 -8.26 -41.70 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.87 Total: 6.68 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.97 Total: -2.17 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.07 Total: -53.34 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.30 Total: -13.27 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.43 -8.26 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.390 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds