Wall clock time and date at job start Sat Apr 11 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00397 * 2 1 4 4 H 1.48495 * 109.47403 * 270.00108 * 3 2 1 5 5 H 1.48500 * 109.47026 * 30.00480 * 3 2 1 6 6 H 1.48506 * 109.46984 * 150.00106 * 3 2 1 7 7 C 1.38819 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00120 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00047 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.54359 * 36.18024 * 10 9 7 12 12 C 1.55942 * 110.49069 * 273.55162 * 10 9 7 13 13 C 1.56415 * 105.84827 * 233.75359 * 12 10 9 14 14 C 1.51107 * 101.53858 * 335.06678 * 13 12 10 15 15 H 1.09000 * 109.64688 * 290.69467 * 14 13 12 16 16 C 1.50337 * 125.60226 * 156.00989 * 14 13 12 17 17 N 1.49216 * 104.86424 * 215.57674 * 16 14 13 18 18 C 1.34769 * 126.06316 * 187.10494 * 17 16 14 19 19 O 1.21285 * 120.00459 * 175.36533 * 18 17 16 20 20 C 1.50701 * 119.99990 * 355.36045 * 18 17 16 21 21 C 1.52999 * 109.54213 * 305.99144 * 20 18 17 22 22 F 1.39895 * 109.47259 * 306.20590 * 21 20 18 23 23 C 1.53172 * 109.54723 * 185.72298 * 20 18 17 24 24 C 1.53101 * 109.16315 * 297.11672 * 23 20 18 25 25 O 1.42903 * 109.41000 * 302.38633 * 24 23 20 26 26 C 1.42906 * 114.09557 * 61.16440 * 25 24 23 27 27 C 1.53094 * 109.41218 * 298.83333 * 26 25 24 28 28 C 1.49699 * 107.88042 * 7.06487 * 17 16 14 29 29 C 1.50297 * 110.49455 * 158.80933 * 10 9 7 30 30 H 1.08998 * 110.00010 * 38.17090 * 29 10 9 31 31 H 0.96999 * 119.99813 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99359 * 0.02562 * 9 7 2 33 33 H 1.08994 * 110.18866 * 352.86576 * 12 10 9 34 34 H 1.09000 * 110.18655 * 114.63860 * 12 10 9 35 35 H 1.08996 * 110.99922 * 93.09183 * 13 12 10 36 36 H 1.09000 * 110.99747 * 216.93900 * 13 12 10 37 37 H 1.08998 * 110.36384 * 334.42764 * 16 14 13 38 38 H 1.09001 * 110.35919 * 96.73074 * 16 14 13 39 39 H 1.08998 * 109.47183 * 66.21302 * 21 20 18 40 40 H 1.09000 * 109.47133 * 186.20745 * 21 20 18 41 41 H 1.08999 * 109.52695 * 57.01883 * 23 20 18 42 42 H 1.09000 * 109.52357 * 177.20955 * 23 20 18 43 43 H 1.08999 * 109.47965 * 182.41017 * 24 23 20 44 44 H 1.08997 * 109.48043 * 62.37252 * 24 23 20 45 45 H 1.08999 * 109.47702 * 178.85500 * 26 25 24 46 46 H 1.08995 * 109.49234 * 58.82650 * 26 25 24 47 47 H 1.09002 * 109.52391 * 297.70285 * 27 26 25 48 48 H 1.09004 * 109.57169 * 177.54615 * 27 26 25 49 49 H 1.08996 * 110.84859 * 266.94067 * 28 17 16 50 50 H 1.08999 * 110.84214 * 143.32931 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4711 -0.0022 11 1 3.5895 -3.2138 -0.6050 12 6 4.3071 -2.9900 1.4553 13 6 5.8428 -3.2386 1.6183 14 6 6.2652 -3.4696 0.1860 15 1 5.8617 -4.4188 -0.1666 16 6 7.6497 -3.2629 -0.3624 17 7 7.4400 -2.7508 -1.7481 18 6 8.3992 -2.5495 -2.6732 19 8 8.0962 -2.2078 -3.7967 20 6 9.8485 -2.7489 -2.3115 21 6 10.1889 -1.9082 -1.0793 22 9 9.8284 -0.5762 -1.3095 23 6 10.7335 -2.3213 -3.4863 24 6 10.4392 -3.2200 -4.6903 25 8 10.6653 -4.5845 -4.3310 26 6 9.8321 -5.0538 -3.2690 27 6 10.1020 -4.2288 -2.0079 28 6 5.9752 -2.5010 -1.9291 29 6 5.5117 -2.2702 -0.5115 30 1 5.9078 -1.3216 -0.1490 31 1 -0.4850 0.8400 0.0004 32 1 3.8645 -0.3623 -0.0007 33 1 3.9697 -2.2396 2.1701 34 1 3.7581 -3.9205 1.6000 35 1 6.3384 -2.3617 2.0348 36 1 6.0330 -4.1204 2.2301 37 1 8.1888 -2.5284 0.2359 38 1 8.1934 -4.2073 -0.3853 39 1 9.6415 -2.2890 -0.2171 40 1 11.2598 -1.9662 -0.8844 41 1 10.5195 -1.2843 -3.7450 42 1 11.7824 -2.4189 -3.2066 43 1 11.0965 -2.9480 -5.5162 44 1 9.4005 -3.0914 -4.9946 45 1 10.0520 -6.1029 -3.0710 46 1 8.7854 -4.9495 -3.5546 47 1 11.1382 -4.3650 -1.6984 48 1 9.4370 -4.5557 -1.2085 49 1 5.4835 -3.3727 -2.3608 50 1 5.8055 -1.6156 -2.5417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026361670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:55 Heat of formation + Delta-G solvation = -113.444483 kcal Electronic energy + Delta-G solvation = -32128.660446 eV Core-core repulsion = 27877.318560 eV Total energy + Delta-G solvation = -4251.341886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 5.04 seconds Orbital eigenvalues (eV) -48.74417 -42.23239 -40.90667 -38.96402 -37.03097 -35.76349 -35.04654 -33.10733 -32.23015 -30.90785 -30.11305 -28.84180 -27.18853 -25.50945 -24.69030 -24.52374 -23.76522 -22.35447 -21.59164 -20.66429 -19.96789 -19.47547 -17.89817 -17.69073 -17.61319 -17.25975 -16.91956 -16.68229 -16.53519 -16.15719 -16.01664 -15.78408 -15.76398 -15.15987 -15.08474 -14.73320 -14.55947 -14.45745 -14.37730 -14.02210 -13.58982 -13.37931 -13.31625 -13.22187 -13.05588 -12.71953 -12.66371 -12.49595 -12.28763 -12.18417 -12.14220 -12.05041 -11.84141 -11.69859 -11.53474 -11.50946 -11.38508 -11.03639 -10.98074 -10.76207 -10.36848 -9.76955 -9.31284 -8.04464 -5.36623 1.33522 1.36863 1.43000 1.45266 1.69382 2.45098 2.87028 2.88683 3.15143 3.21860 3.27811 3.47303 3.52608 3.64570 3.82144 3.91201 3.92528 3.96614 4.10849 4.18110 4.20846 4.26281 4.32815 4.39659 4.43634 4.45846 4.53314 4.55245 4.61911 4.66063 4.69327 4.72926 4.74962 4.84028 4.88811 4.90398 4.95887 5.00239 5.04183 5.12540 5.18430 5.23026 5.33189 5.50786 5.53472 5.77845 6.18405 6.20957 6.40041 7.00050 7.06265 7.83794 8.00524 9.17278 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.003166 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.566249 B = 8841.173938 C = 9235.294178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.948 3.052 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.253 1.253 7 C -0.224 4.224 8 H 0.060 0.940 9 N -0.751 5.751 10 C 0.190 3.810 11 H 0.048 0.952 12 C -0.139 4.139 13 C -0.082 4.082 14 C -0.104 4.104 15 H 0.094 0.906 16 C 0.106 3.894 17 N -0.619 5.619 18 C 0.532 3.468 19 O -0.578 6.578 20 C -0.105 4.105 21 C 0.054 3.946 22 F -0.234 7.234 23 C -0.127 4.127 24 C 0.048 3.952 25 O -0.394 6.394 26 C 0.053 3.947 27 C -0.141 4.141 28 C 0.129 3.871 29 C -0.125 4.125 30 H 0.071 0.929 31 H 0.257 0.743 32 H 0.362 0.638 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.050 0.950 45 H 0.124 0.876 46 H 0.025 0.975 47 H 0.120 0.880 48 H 0.110 0.890 49 H 0.074 0.926 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.628 -12.568 1.995 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.776 3.224 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.178 1.178 7 C -0.355 4.355 8 H 0.078 0.922 9 N -0.393 5.393 10 C 0.082 3.918 11 H 0.066 0.934 12 C -0.180 4.180 13 C -0.120 4.120 14 C -0.124 4.124 15 H 0.112 0.888 16 C -0.014 4.014 17 N -0.353 5.353 18 C 0.322 3.678 19 O -0.458 6.458 20 C -0.108 4.108 21 C 0.000 4.000 22 F -0.215 7.215 23 C -0.165 4.165 24 C -0.028 4.028 25 O -0.313 6.313 26 C -0.024 4.024 27 C -0.178 4.178 28 C 0.007 3.993 29 C -0.145 4.145 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.195 0.805 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.068 0.932 45 H 0.142 0.858 46 H 0.043 0.957 47 H 0.138 0.862 48 H 0.128 0.872 49 H 0.092 0.908 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 29.452 -12.544 1.237 32.036 hybrid contribution -1.102 1.951 -0.471 2.290 sum 28.350 -10.593 0.766 30.274 Atomic orbital electron populations 1.69863 1.06997 1.26502 1.60082 1.25415 0.95994 1.00877 1.03092 0.85512 0.78755 0.80406 0.77702 1.21351 1.22124 1.17757 1.19046 0.82644 0.93361 1.40458 0.92154 1.42909 1.02489 1.03837 1.90090 1.20341 0.89250 0.87135 0.95116 0.93361 1.23581 0.96865 1.00558 0.96976 1.21706 0.93481 1.02922 0.93916 1.22185 0.94393 0.98381 0.97409 0.88750 1.22007 0.97403 1.01165 0.80786 1.49852 1.06424 1.64612 1.14430 1.20642 0.87737 0.75854 0.83573 1.90639 1.83672 1.49278 1.22212 1.21573 0.90456 1.00156 0.98623 1.22680 1.04828 0.75658 0.96857 1.92774 1.94088 1.38548 1.96106 1.22026 1.00178 1.00013 0.94253 1.22819 1.01931 0.81057 0.97015 1.87884 1.61882 1.27272 1.54246 1.22733 0.93243 0.99961 0.86436 1.22431 1.06563 0.89322 0.99525 1.21350 0.80581 1.00585 0.96820 1.22284 0.96931 1.00420 0.94904 0.91014 0.93431 0.80460 0.93100 0.91664 0.90872 0.88376 0.89004 0.86421 0.87094 0.86000 0.91861 0.87529 0.87961 0.93206 0.85770 0.95673 0.86217 0.87189 0.90800 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.51 13.97 21.65 0.30 -63.21 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.95 46.57 27.73 68.60 1.90 48.47 16 4 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 5 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.25 -11.22 6.52 99.48 0.65 -10.57 16 7 C -0.22 -12.64 10.46 84.03 0.88 -11.76 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 9 N -0.75 -34.31 4.92 -322.24 -1.59 -35.90 16 10 C 0.19 6.61 3.39 45.14 0.15 6.76 16 11 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 12 C -0.14 -3.96 6.73 32.80 0.22 -3.74 16 13 C -0.08 -1.44 6.73 31.17 0.21 -1.23 16 14 C -0.10 -1.80 2.77 -10.53 -0.03 -1.83 16 15 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 16 C 0.11 1.41 5.08 84.99 0.43 1.85 16 17 N -0.62 -14.01 3.40 -815.09 -2.77 -16.78 16 18 C 0.53 13.44 4.94 87.66 0.43 13.88 16 19 O -0.58 -20.06 14.03 -3.04 -0.04 -20.10 16 20 C -0.10 -1.67 0.37 -52.81 -0.02 -1.69 16 21 C 0.05 0.66 6.02 71.98 0.43 1.09 16 22 F -0.23 -5.25 16.71 44.97 0.75 -4.50 16 23 C -0.13 -2.26 4.49 30.69 0.14 -2.12 16 24 C 0.05 1.02 6.55 72.02 0.47 1.49 16 25 O -0.39 -7.93 10.77 -148.98 -1.60 -9.54 16 26 C 0.05 0.78 6.62 72.01 0.48 1.26 16 27 C -0.14 -1.31 4.81 30.69 0.15 -1.16 16 28 C 0.13 3.69 6.80 85.08 0.58 4.27 16 29 C -0.13 -3.45 2.40 -10.61 -0.03 -3.48 16 30 H 0.07 2.13 7.92 -2.39 -0.02 2.11 16 31 H 0.26 15.87 8.31 -92.71 -0.77 15.09 16 32 H 0.36 16.34 5.50 -92.71 -0.51 15.83 16 33 H 0.05 1.71 7.98 -2.39 -0.02 1.69 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 0.98 5.83 -2.39 -0.01 0.97 16 38 H 0.12 0.73 5.33 -2.39 -0.01 0.72 16 39 H 0.11 0.85 4.53 -2.39 -0.01 0.84 16 40 H 0.12 0.65 8.14 -2.39 -0.02 0.64 16 41 H 0.06 1.40 8.02 -2.39 -0.02 1.38 16 42 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 1.40 5.60 -2.39 -0.01 1.39 16 45 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.02 0.50 7.38 -2.39 -0.02 0.48 16 47 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.11 0.53 4.77 -2.39 -0.01 0.52 16 49 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 Total: -1.00 -80.11 372.81 2.31 -77.80 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.39 Total: 23.40 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 4.97 Total: 0.37 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.05 Total: -115.89 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.65 Total: -29.64 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.75 Total: -4.50 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.90 Total: 48.47 kcal Total: -80.11 2.31 -77.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.645 kcal (2) G-P(sol) polarization free energy of solvation -80.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.04 seconds