Wall clock time and date at job start Sat Apr 11 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48501 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47053 * 299.99997 * 3 2 1 6 6 H 1.48497 * 109.46852 * 60.00162 * 3 2 1 7 7 C 1.38814 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00189 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.47772 * 125.96175 * 0.04254 * 9 7 2 11 11 C 1.55097 * 104.91383 * 201.54244 * 10 9 7 12 12 C 1.56109 * 101.08534 * 322.94407 * 11 10 9 13 13 H 1.09001 * 112.18685 * 157.73126 * 12 11 10 14 14 C 1.53609 * 106.54803 * 281.23230 * 12 11 10 15 15 N 1.46687 * 108.85640 * 160.21285 * 14 12 11 16 16 C 1.34782 * 120.97522 * 121.14907 * 15 14 12 17 17 O 1.21283 * 120.00162 * 5.09118 * 16 15 14 18 18 C 1.50702 * 120.00119 * 185.08494 * 16 15 14 19 19 C 1.52994 * 109.54654 * 297.22774 * 18 16 15 20 20 F 1.39900 * 109.46851 * 304.83336 * 19 18 16 21 21 C 1.53181 * 109.54320 * 176.95449 * 18 16 15 22 22 C 1.53090 * 109.16544 * 297.11895 * 21 18 16 23 23 O 1.42903 * 109.41402 * 302.38886 * 22 21 18 24 24 C 1.42909 * 114.09893 * 61.15835 * 23 22 21 25 25 C 1.53089 * 109.41426 * 298.84402 * 24 23 22 26 26 C 1.46532 * 118.05131 * 300.88642 * 15 14 12 27 27 C 1.51784 * 110.13263 * 54.03828 * 26 15 14 28 28 C 1.46252 * 125.96080 * 180.02562 * 9 7 2 29 29 H 1.08998 * 105.49826 * 71.52297 * 28 9 7 30 30 H 0.96998 * 120.00370 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.35231 * 320.40297 * 10 9 7 32 32 H 1.09002 * 110.34892 * 82.57706 * 10 9 7 33 33 H 1.09003 * 111.09717 * 80.90190 * 11 10 9 34 34 H 1.08998 * 111.09932 * 204.94716 * 11 10 9 35 35 H 1.08996 * 109.68180 * 40.39075 * 14 12 11 36 36 H 1.08996 * 109.64167 * 280.01311 * 14 12 11 37 37 H 1.08999 * 109.47042 * 64.83008 * 19 18 16 38 38 H 1.08993 * 109.47391 * 184.83367 * 19 18 16 39 39 H 1.09000 * 109.51929 * 57.02431 * 21 18 16 40 40 H 1.09002 * 109.51968 * 177.20561 * 21 18 16 41 41 H 1.08995 * 109.48043 * 182.40858 * 22 21 18 42 42 H 1.08994 * 109.48288 * 62.37212 * 22 21 18 43 43 H 1.08988 * 109.48052 * 178.85739 * 24 23 22 44 44 H 1.09003 * 109.47545 * 58.82202 * 24 23 22 45 45 H 1.09003 * 109.52301 * 297.70163 * 25 24 23 46 46 H 1.09001 * 109.57423 * 177.54304 * 25 24 23 47 47 H 1.08998 * 109.36345 * 174.24302 * 26 15 14 48 48 H 1.09001 * 109.35341 * 293.83620 * 26 15 14 49 49 H 1.08990 * 108.36333 * 79.85471 * 27 26 15 50 50 H 1.09003 * 108.35901 * 197.13055 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1441 -2.5416 -0.0009 11 6 -0.3965 -3.9695 0.5496 12 6 0.7955 -4.7514 -0.0866 13 1 1.0308 -5.6624 0.4637 14 6 0.4062 -5.0309 -1.5461 15 7 1.6218 -5.3228 -2.3134 16 6 1.7693 -6.4965 -2.9593 17 8 0.8540 -7.2917 -2.9887 18 6 3.0714 -6.8207 -3.6452 19 6 3.3254 -5.8102 -4.7655 20 9 2.2300 -5.7936 -5.6356 21 6 3.0031 -8.2337 -4.2328 22 6 2.8266 -9.2430 -3.0954 23 8 3.9074 -9.1098 -2.1701 24 6 3.9923 -7.8235 -1.5533 25 6 4.2156 -6.7572 -2.6288 26 6 2.6686 -4.2986 -2.3620 27 6 3.0611 -3.8856 -0.9551 28 6 1.9214 -3.7237 -0.0005 29 1 2.3441 -3.8541 0.9957 30 1 -0.4850 0.8400 0.0004 31 1 -0.6032 -1.7977 0.6503 32 1 -0.5346 -2.4498 -1.0144 33 1 -0.3403 -3.9860 1.6380 34 1 -1.3529 -4.3605 0.2025 35 1 -0.0896 -4.1565 -1.9676 36 1 -0.2659 -5.8879 -1.5883 37 1 3.4629 -4.8181 -4.3356 38 1 4.2220 -6.0953 -5.3156 39 1 2.1569 -8.3034 -4.9163 40 1 3.9260 -8.4493 -4.7713 41 1 2.8202 -10.2535 -3.5038 42 1 1.8838 -9.0520 -2.5829 43 1 4.8256 -7.8115 -0.8509 44 1 3.0646 -7.6139 -1.0207 45 1 5.1630 -6.9430 -3.1348 46 1 4.2372 -5.7706 -2.1659 47 1 3.5416 -4.6982 -2.8780 48 1 2.2979 -3.4285 -2.9039 49 1 3.7409 -4.6370 -0.5537 50 1 3.5952 -2.9371 -1.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036822897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:59 Heat of formation + Delta-G solvation = -81.695502 kcal Electronic energy + Delta-G solvation = -33233.196485 eV Core-core repulsion = 28983.231338 eV Total energy + Delta-G solvation = -4249.965146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -47.82448 -41.21795 -39.14686 -37.82302 -35.72219 -34.58044 -32.78786 -31.89636 -31.22855 -29.46661 -28.35220 -27.57267 -25.79926 -24.32382 -23.93548 -23.22326 -22.60303 -21.64322 -20.20141 -19.30473 -18.17716 -16.95478 -16.83576 -16.63645 -16.25326 -16.06164 -15.80910 -15.69767 -15.36415 -15.02697 -14.63759 -14.44451 -14.30393 -14.02459 -13.74848 -13.60663 -13.08364 -12.97104 -12.87951 -12.51717 -12.32608 -12.10038 -11.90176 -11.67129 -11.59358 -11.50440 -11.26210 -11.16917 -11.06915 -10.87820 -10.68383 -10.63093 -10.50587 -10.21376 -10.18066 -10.00542 -9.72982 -9.67066 -9.57472 -9.35717 -8.70028 -8.33560 -6.88199 -5.74478 -3.13863 2.60224 3.06154 3.33586 3.38680 3.41833 3.74476 4.03481 4.05913 4.35516 4.40736 4.58460 4.64021 4.76605 4.87658 4.98413 5.04774 5.15835 5.17871 5.23163 5.32895 5.36249 5.37715 5.41442 5.45392 5.49332 5.56015 5.62082 5.65512 5.70245 5.78614 5.84867 5.87198 5.95628 6.05951 6.15372 6.19850 6.24293 6.35844 6.51819 6.58465 6.66102 6.84506 6.89545 7.06795 7.44559 7.55206 7.57355 7.78913 8.21596 8.26587 9.13291 9.75950 10.42292 11.31465 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.003713 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.555433 B = 7538.389426 C = 7874.435591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.156 3.844 11 C -0.143 4.143 12 C -0.106 4.106 13 H 0.075 0.925 14 C 0.121 3.879 15 N -0.596 5.596 16 C 0.528 3.472 17 O -0.539 6.539 18 C -0.112 4.112 19 C 0.060 3.940 20 F -0.207 7.207 21 C -0.127 4.127 22 C 0.052 3.948 23 O -0.384 6.384 24 C 0.063 3.937 25 C -0.161 4.161 26 C 0.093 3.907 27 C -0.137 4.137 28 C 0.173 3.827 29 H 0.009 0.991 30 H 0.252 0.748 31 H 0.098 0.902 32 H 0.015 0.985 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.051 0.949 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.019 -14.113 -6.147 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.031 3.969 11 C -0.182 4.182 12 C -0.126 4.126 13 H 0.094 0.906 14 C -0.001 4.001 15 N -0.327 5.327 16 C 0.315 3.685 17 O -0.417 6.417 18 C -0.115 4.115 19 C 0.005 3.995 20 F -0.188 7.188 21 C -0.165 4.165 22 C -0.024 4.024 23 O -0.303 6.303 24 C -0.014 4.014 25 C -0.198 4.198 26 C -0.029 4.029 27 C -0.177 4.177 28 C 0.065 3.935 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.070 0.930 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.591 -14.424 -6.128 17.413 hybrid contribution 0.309 1.323 -0.208 1.375 sum 7.900 -13.101 -6.336 16.559 Atomic orbital electron populations 1.69850 1.04897 1.24791 1.57096 1.24761 0.95653 0.97622 1.02303 0.86065 0.78637 0.83861 0.77291 1.20558 1.21797 1.21762 1.18998 0.90424 0.82262 1.43485 0.90413 1.44481 1.01773 0.99209 1.86269 1.21918 0.84665 0.91684 0.98593 1.23288 0.95994 0.98985 0.99925 1.22410 0.97487 0.97627 0.95066 0.90620 1.21807 0.85942 1.01844 0.90513 1.47896 1.19645 1.15458 1.49728 1.20055 0.88509 0.81308 0.78655 1.90620 1.41827 1.48241 1.61013 1.21513 0.95178 0.98203 0.96655 1.22468 0.87242 1.00603 0.89207 1.92808 1.56959 1.97809 1.71260 1.22004 1.03436 0.91906 0.99164 1.22785 0.90942 0.98894 0.89807 1.87897 1.51473 1.32069 1.58847 1.22510 1.02170 0.82687 0.94002 1.22627 0.97422 1.02404 0.97362 1.21936 0.90652 0.91287 0.99024 1.21295 0.99885 1.01929 0.94565 1.19403 0.91547 0.86785 0.95742 0.97336 0.93743 0.88367 0.96745 0.91900 0.92033 0.90323 0.89755 0.88848 0.89649 0.89590 0.90489 0.88947 0.90661 0.88295 0.92934 0.89513 0.88183 0.89244 0.90767 0.93022 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.64 10.18 55.49 0.56 -25.08 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.22 -5.71 9.59 -15.06 -0.14 -5.85 16 8 H 0.08 1.91 7.02 -52.48 -0.37 1.54 16 9 N -0.59 -13.76 3.32 -165.67 -0.55 -14.31 16 10 C 0.16 3.56 5.35 -2.24 -0.01 3.55 16 11 C -0.14 -2.58 6.46 -23.96 -0.15 -2.74 16 12 C -0.11 -1.78 3.70 -88.80 -0.33 -2.11 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.12 2.01 5.56 -3.62 -0.02 1.99 16 15 N -0.60 -8.98 2.93 -173.87 -0.51 -9.49 16 16 C 0.53 7.84 4.74 -10.98 -0.05 7.78 16 17 O -0.54 -9.49 13.40 5.55 0.07 -9.42 16 18 C -0.11 -1.27 0.36 -155.47 -0.06 -1.33 16 19 C 0.06 0.61 6.05 37.15 0.22 0.84 16 20 F -0.21 -2.86 16.69 2.25 0.04 -2.82 16 21 C -0.13 -1.40 4.45 -26.59 -0.12 -1.52 16 22 C 0.05 0.61 6.55 37.20 0.24 0.86 16 23 O -0.38 -4.73 10.77 -35.23 -0.38 -5.11 16 24 C 0.06 0.69 6.62 37.20 0.25 0.93 16 25 C -0.16 -1.53 4.58 -26.59 -0.12 -1.66 16 26 C 0.09 1.29 4.39 -4.64 -0.02 1.27 16 27 C -0.14 -2.11 5.47 -29.05 -0.16 -2.27 16 28 C 0.17 3.25 2.64 -69.94 -0.18 3.06 16 29 H 0.01 0.18 8.07 -51.93 -0.42 -0.24 16 30 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.10 2.57 6.09 -51.93 -0.32 2.25 16 32 H 0.01 0.36 7.10 -51.93 -0.37 -0.01 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.00 7.98 -51.93 -0.41 0.59 16 35 H 0.08 1.45 6.50 -51.93 -0.34 1.12 16 36 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 37 H 0.09 0.90 4.86 -51.93 -0.25 0.65 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.05 7.87 -51.93 -0.41 0.64 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.06 5.91 -51.93 -0.31 0.75 16 43 H 0.10 0.89 8.14 -51.94 -0.42 0.47 16 44 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.93 3.74 -51.93 -0.19 0.74 16 47 H 0.09 0.96 2.42 -51.93 -0.13 0.83 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.05 0.67 7.23 -51.93 -0.38 0.30 16 50 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -30.37 359.42 -8.62 -38.99 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.50 Total: 3.29 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.75 Total: 2.50 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.49 Total: -48.88 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.30 Total: -14.52 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.37 -8.62 -38.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.708 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds