Wall clock time and date at job start Sat Apr 11 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86809 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47029 * 274.98477 * 3 2 1 5 5 H 1.48502 * 109.46747 * 34.98326 * 3 2 1 6 6 H 1.48503 * 109.47093 * 154.98027 * 3 2 1 7 7 C 1.38810 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99782 * 187.77133 * 7 2 1 9 9 N 1.36929 * 119.99812 * 7.76812 * 7 2 1 10 10 C 1.48155 * 126.40640 * 356.34806 * 9 7 2 11 11 C 1.55293 * 107.04458 * 175.11952 * 10 9 7 12 12 C 1.53744 * 101.83640 * 337.50571 * 11 10 9 13 13 H 1.08993 * 111.98040 * 280.77584 * 12 11 10 14 14 C 1.52245 * 114.75448 * 152.77894 * 12 11 10 15 15 N 1.47711 * 106.35851 * 190.39769 * 14 12 11 16 16 C 1.34782 * 119.68558 * 232.03579 * 15 14 12 17 17 O 1.21280 * 119.99741 * 355.11503 * 16 15 14 18 18 C 1.50698 * 120.00144 * 175.11108 * 16 15 14 19 19 C 1.53008 * 109.54236 * 299.25677 * 18 16 15 20 20 F 1.39903 * 109.47260 * 293.72420 * 19 18 16 21 21 C 1.53180 * 109.54395 * 179.08445 * 18 16 15 22 22 C 1.53279 * 109.05941 * 297.02787 * 21 18 16 23 23 O 1.42905 * 109.46222 * 302.44602 * 22 21 18 24 24 C 1.42904 * 114.09729 * 61.15854 * 23 22 21 25 25 C 1.53096 * 109.41387 * 298.84212 * 24 23 22 26 26 C 1.46598 * 120.63122 * 52.06093 * 15 14 12 27 27 C 1.53952 * 110.58160 * 312.17953 * 26 15 14 28 28 C 1.45473 * 126.40350 * 176.38236 * 9 7 2 29 29 H 1.09004 * 109.27058 * 93.74852 * 28 9 7 30 30 H 0.97000 * 120.00059 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.91853 * 294.46119 * 10 9 7 32 32 H 1.09000 * 109.92448 * 55.76833 * 10 9 7 33 33 H 1.08995 * 110.95679 * 95.64330 * 11 10 9 34 34 H 1.08997 * 110.95541 * 219.37657 * 11 10 9 35 35 H 1.08995 * 110.06740 * 309.61272 * 14 12 11 36 36 H 1.08998 * 110.06286 * 71.07823 * 14 12 11 37 37 H 1.09006 * 109.46813 * 53.71830 * 19 18 16 38 38 H 1.08997 * 109.47241 * 173.72067 * 19 18 16 39 39 H 1.08999 * 109.52312 * 57.02083 * 21 18 16 40 40 H 1.09001 * 109.52037 * 177.20461 * 21 18 16 41 41 H 1.09003 * 109.45478 * 182.44942 * 22 21 18 42 42 H 1.08995 * 109.47087 * 62.45179 * 22 21 18 43 43 H 1.08996 * 109.47945 * 178.86124 * 24 23 22 44 44 H 1.09003 * 109.48659 * 58.83516 * 24 23 22 45 45 H 1.08989 * 109.52278 * 297.70005 * 25 24 23 46 46 H 1.09001 * 109.51555 * 177.51219 * 25 24 23 47 47 H 1.09002 * 109.24866 * 72.46235 * 26 15 14 48 48 H 1.09004 * 109.25565 * 191.92653 * 26 15 14 49 49 H 1.09006 * 109.87968 * 291.58922 * 27 26 15 50 50 H 1.08994 * 109.87822 * 170.51004 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5041 2.6200 0.8027 6 1 3.5964 1.4122 0.5921 7 6 2.0103 -1.2021 -0.0005 8 1 3.0829 -1.2063 0.1259 9 7 1.3351 -2.3824 -0.1614 10 6 -0.1332 -2.5478 -0.2695 11 6 -0.4017 -4.0487 -0.5644 12 6 0.9409 -4.4973 -1.1642 13 1 1.0389 -4.2047 -2.2095 14 6 1.2633 -5.9729 -0.9730 15 7 2.6727 -6.1469 -1.3793 16 6 2.9960 -7.0996 -2.2762 17 8 2.1471 -7.8665 -2.6788 18 6 4.4123 -7.2117 -2.7789 19 6 4.8099 -5.9127 -3.4828 20 9 4.0441 -5.7579 -4.6434 21 6 4.5155 -8.3804 -3.7637 22 6 4.1914 -9.6853 -3.0277 23 8 5.0855 -9.8444 -1.9244 24 6 4.9990 -8.8039 -0.9486 25 6 5.3561 -7.4650 -1.5994 26 6 3.7232 -5.2937 -0.8160 27 6 3.3061 -3.8128 -0.8725 28 6 1.9253 -3.7086 -0.2572 29 1 1.9459 -4.1656 0.7322 30 1 -0.4850 0.8400 0.0004 31 1 -0.6092 -2.2629 0.6688 32 1 -0.5171 -1.9347 -1.0849 33 1 -0.6199 -4.5935 0.3541 34 1 -1.2097 -4.1656 -1.2866 35 1 1.1387 -6.2504 0.0737 36 1 0.6132 -6.5821 -1.6010 37 1 4.6330 -5.0691 -2.8156 38 1 5.8666 -5.9515 -3.7472 39 1 3.8067 -8.2337 -4.5787 40 1 5.5278 -8.4305 -4.1647 41 1 4.3052 -10.5261 -3.7121 42 1 3.1652 -9.6509 -2.6619 43 1 5.6948 -9.0097 -0.1352 44 1 3.9835 -8.7577 -0.5554 45 1 6.3853 -7.4967 -1.9567 46 1 5.2480 -6.6642 -0.8678 47 1 3.8994 -5.5782 0.2214 48 1 4.6417 -5.4299 -1.3869 49 1 3.2766 -3.4753 -1.9086 50 1 4.0118 -3.2070 -0.3043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036822898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:07 Heat of formation + Delta-G solvation = -81.122032 kcal Electronic energy + Delta-G solvation = -32786.404469 eV Core-core repulsion = 28536.464190 eV Total energy + Delta-G solvation = -4249.940279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -47.82542 -41.33623 -39.20103 -37.87468 -35.88617 -34.72645 -32.68992 -31.70080 -31.33536 -29.67500 -28.52624 -27.83346 -25.41012 -24.21070 -24.00500 -23.05046 -22.42840 -21.55003 -20.17162 -19.72471 -18.76195 -17.02918 -16.90198 -16.60794 -16.38777 -16.11207 -15.68533 -15.60270 -15.44425 -14.91179 -14.81474 -14.48542 -14.23726 -13.93875 -13.81876 -13.76780 -13.28048 -13.12206 -12.87398 -12.60887 -12.40498 -12.33399 -11.80967 -11.73827 -11.58089 -11.49111 -11.40687 -11.27328 -10.99687 -10.87323 -10.81744 -10.77773 -10.59806 -10.21095 -10.12446 -9.98341 -9.77142 -9.65865 -9.53341 -9.41222 -8.65097 -8.60824 -6.89935 -5.78432 -3.10074 2.48030 2.89114 3.35675 3.40532 3.43286 3.66756 3.95293 3.99735 4.28709 4.43411 4.50725 4.57476 4.69369 4.81664 4.89568 4.96447 4.98992 5.08423 5.17007 5.25030 5.29570 5.29823 5.35120 5.42776 5.47733 5.50942 5.53423 5.57770 5.68617 5.72678 5.80097 5.83356 5.90330 5.96099 6.05218 6.09307 6.15280 6.26982 6.40283 6.53838 6.56335 6.74603 6.98585 6.99255 7.35208 7.49331 7.56850 7.75365 8.08511 8.18218 9.13123 9.77280 10.45478 11.34732 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.003345 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.150831 B = 8369.469082 C = 8838.725429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.127 3.873 15 N -0.602 5.602 16 C 0.525 3.475 17 O -0.535 6.535 18 C -0.113 4.113 19 C 0.060 3.940 20 F -0.206 7.206 21 C -0.127 4.127 22 C 0.051 3.949 23 O -0.384 6.384 24 C 0.063 3.937 25 C -0.164 4.164 26 C 0.087 3.913 27 C -0.134 4.134 28 C 0.169 3.831 29 H 0.019 0.981 30 H 0.253 0.747 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.069 0.931 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.653 -16.213 -3.367 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.334 5.334 16 C 0.312 3.688 17 O -0.412 6.412 18 C -0.117 4.117 19 C 0.005 3.995 20 F -0.187 7.187 21 C -0.165 4.165 22 C -0.025 4.025 23 O -0.302 6.302 24 C -0.014 4.014 25 C -0.202 4.202 26 C -0.036 4.036 27 C -0.173 4.173 28 C 0.061 3.939 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.087 0.913 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.241 -16.502 -3.535 19.741 hybrid contribution 0.263 1.418 -0.084 1.444 sum 10.504 -15.084 -3.619 18.734 Atomic orbital electron populations 1.69953 1.04952 1.25136 1.56417 1.24801 0.95630 0.97639 1.02114 0.86175 0.78707 0.83827 0.77516 1.21639 1.21774 1.20640 1.18971 0.91138 0.82521 1.43115 0.90364 1.44192 1.01878 1.00506 1.85298 1.21528 0.84019 0.88714 1.00472 1.22696 0.95428 0.99829 0.99420 1.22639 0.97881 0.93287 1.00642 0.90175 1.21642 0.80457 0.97192 1.00193 1.48258 1.08931 1.33712 1.42524 1.20195 0.89551 0.80493 0.78595 1.90625 1.50652 1.41897 1.58061 1.21525 0.94296 0.97895 0.97951 1.22456 0.95382 0.97210 0.84455 1.92807 1.78071 1.96672 1.51171 1.22018 1.03115 0.93449 0.97918 1.22853 0.94752 0.96697 0.88207 1.87901 1.62275 1.46554 1.33519 1.22514 1.01474 0.86289 0.91157 1.22728 0.99700 1.00489 0.97236 1.22481 0.90385 0.91640 0.99055 1.21967 0.99710 0.93140 1.02457 1.20602 0.90854 0.87856 0.94621 0.96364 0.93696 0.94221 0.92886 0.92275 0.92024 0.91276 0.89239 0.88699 0.89581 0.89421 0.90464 0.88915 0.90510 0.88300 0.93106 0.89336 0.88226 0.91120 0.88702 0.91256 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.49 55.49 0.58 -25.78 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.44 29.56 -169.99 -5.03 16.41 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.23 -6.04 9.85 -15.06 -0.15 -6.19 16 8 H 0.08 1.96 7.27 -52.48 -0.38 1.58 16 9 N -0.59 -14.30 3.35 -163.09 -0.55 -14.85 16 10 C 0.18 4.16 5.45 -1.92 -0.01 4.15 16 11 C -0.13 -2.44 6.54 -25.13 -0.16 -2.61 16 12 C -0.12 -2.14 2.86 -89.36 -0.26 -2.39 16 13 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 14 C 0.13 1.86 5.94 -3.76 -0.02 1.84 16 15 N -0.60 -8.04 3.00 -172.49 -0.52 -8.56 16 16 C 0.52 7.19 5.00 -10.98 -0.05 7.13 16 17 O -0.54 -8.85 13.26 5.56 0.07 -8.77 16 18 C -0.11 -1.20 0.36 -155.48 -0.06 -1.25 16 19 C 0.06 0.61 6.02 37.16 0.22 0.83 16 20 F -0.21 -2.83 16.53 2.25 0.04 -2.79 16 21 C -0.13 -1.35 4.35 -26.49 -0.12 -1.47 16 22 C 0.05 0.57 6.56 37.30 0.24 0.81 16 23 O -0.38 -4.38 10.77 -35.23 -0.38 -4.75 16 24 C 0.06 0.59 6.62 37.21 0.25 0.84 16 25 C -0.16 -1.35 4.54 -26.59 -0.12 -1.47 16 26 C 0.09 1.00 3.83 -3.49 -0.01 0.99 16 27 C -0.13 -2.05 5.30 -26.98 -0.14 -2.19 16 28 C 0.17 3.18 2.57 -67.98 -0.17 3.01 16 29 H 0.02 0.36 7.92 -51.93 -0.41 -0.05 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 1.02 7.78 -51.93 -0.40 0.62 16 32 H 0.05 1.39 7.24 -51.93 -0.38 1.02 16 33 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.09 1.37 7.04 -51.93 -0.37 1.01 16 37 H 0.10 0.95 4.59 -51.93 -0.24 0.72 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.05 7.65 -51.93 -0.40 0.66 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.02 5.84 -51.93 -0.30 0.71 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.55 7.38 -51.93 -0.38 0.17 16 45 H 0.09 0.59 8.14 -51.94 -0.42 0.17 16 46 H 0.10 0.71 4.40 -51.93 -0.23 0.49 16 47 H 0.07 0.73 7.99 -51.93 -0.41 0.31 16 48 H 0.10 0.86 2.54 -51.93 -0.13 0.73 16 49 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 50 H 0.08 1.21 7.64 -51.93 -0.40 0.81 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -31.71 364.09 -8.72 -40.43 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.77 Total: 1.39 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.66 Total: 1.79 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.48 Total: -49.18 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.31 Total: -13.53 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.71 -8.72 -40.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.691 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds