Wall clock time and date at job start Sat Apr 11 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86809 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47029 * 274.98477 * 3 2 1 5 5 H 1.48502 * 109.46747 * 34.98326 * 3 2 1 6 6 H 1.48503 * 109.47093 * 154.98027 * 3 2 1 7 7 C 1.38810 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99782 * 187.77133 * 7 2 1 9 9 N 1.36929 * 119.99812 * 7.76812 * 7 2 1 10 10 C 1.48155 * 126.40640 * 356.34806 * 9 7 2 11 11 C 1.55293 * 107.04458 * 175.11952 * 10 9 7 12 12 C 1.53744 * 101.83640 * 337.50571 * 11 10 9 13 13 H 1.08993 * 111.98040 * 280.77584 * 12 11 10 14 14 C 1.52245 * 114.75448 * 152.77894 * 12 11 10 15 15 N 1.47711 * 106.35851 * 190.39769 * 14 12 11 16 16 C 1.34782 * 119.68558 * 232.03579 * 15 14 12 17 17 O 1.21280 * 119.99741 * 355.11503 * 16 15 14 18 18 C 1.50698 * 120.00144 * 175.11108 * 16 15 14 19 19 C 1.53008 * 109.54236 * 299.25677 * 18 16 15 20 20 F 1.39903 * 109.47260 * 293.72420 * 19 18 16 21 21 C 1.53180 * 109.54395 * 179.08445 * 18 16 15 22 22 C 1.53279 * 109.05941 * 297.02787 * 21 18 16 23 23 O 1.42905 * 109.46222 * 302.44602 * 22 21 18 24 24 C 1.42904 * 114.09729 * 61.15854 * 23 22 21 25 25 C 1.53096 * 109.41387 * 298.84212 * 24 23 22 26 26 C 1.46598 * 120.63122 * 52.06093 * 15 14 12 27 27 C 1.53952 * 110.58160 * 312.17953 * 26 15 14 28 28 C 1.45473 * 126.40350 * 176.38236 * 9 7 2 29 29 H 1.09004 * 109.27058 * 93.74852 * 28 9 7 30 30 H 0.97000 * 120.00059 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.91853 * 294.46119 * 10 9 7 32 32 H 1.09000 * 109.92448 * 55.76833 * 10 9 7 33 33 H 1.08995 * 110.95679 * 95.64330 * 11 10 9 34 34 H 1.08997 * 110.95541 * 219.37657 * 11 10 9 35 35 H 1.08995 * 110.06740 * 309.61272 * 14 12 11 36 36 H 1.08998 * 110.06286 * 71.07823 * 14 12 11 37 37 H 1.09006 * 109.46813 * 53.71830 * 19 18 16 38 38 H 1.08997 * 109.47241 * 173.72067 * 19 18 16 39 39 H 1.08999 * 109.52312 * 57.02083 * 21 18 16 40 40 H 1.09001 * 109.52037 * 177.20461 * 21 18 16 41 41 H 1.09003 * 109.45478 * 182.44942 * 22 21 18 42 42 H 1.08995 * 109.47087 * 62.45179 * 22 21 18 43 43 H 1.08996 * 109.47945 * 178.86124 * 24 23 22 44 44 H 1.09003 * 109.48659 * 58.83516 * 24 23 22 45 45 H 1.08989 * 109.52278 * 297.70005 * 25 24 23 46 46 H 1.09001 * 109.51555 * 177.51219 * 25 24 23 47 47 H 1.09002 * 109.24866 * 72.46235 * 26 15 14 48 48 H 1.09004 * 109.25565 * 191.92653 * 26 15 14 49 49 H 1.09006 * 109.87968 * 291.58922 * 27 26 15 50 50 H 1.08994 * 109.87822 * 170.51004 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5041 2.6200 0.8027 6 1 3.5964 1.4122 0.5921 7 6 2.0103 -1.2021 -0.0005 8 1 3.0829 -1.2063 0.1259 9 7 1.3351 -2.3824 -0.1614 10 6 -0.1332 -2.5478 -0.2695 11 6 -0.4017 -4.0487 -0.5644 12 6 0.9409 -4.4973 -1.1642 13 1 1.0389 -4.2047 -2.2095 14 6 1.2633 -5.9729 -0.9730 15 7 2.6727 -6.1469 -1.3793 16 6 2.9960 -7.0996 -2.2762 17 8 2.1471 -7.8665 -2.6788 18 6 4.4123 -7.2117 -2.7789 19 6 4.8099 -5.9127 -3.4828 20 9 4.0441 -5.7579 -4.6434 21 6 4.5155 -8.3804 -3.7637 22 6 4.1914 -9.6853 -3.0277 23 8 5.0855 -9.8444 -1.9244 24 6 4.9990 -8.8039 -0.9486 25 6 5.3561 -7.4650 -1.5994 26 6 3.7232 -5.2937 -0.8160 27 6 3.3061 -3.8128 -0.8725 28 6 1.9253 -3.7086 -0.2572 29 1 1.9459 -4.1656 0.7322 30 1 -0.4850 0.8400 0.0004 31 1 -0.6092 -2.2629 0.6688 32 1 -0.5171 -1.9347 -1.0849 33 1 -0.6199 -4.5935 0.3541 34 1 -1.2097 -4.1656 -1.2866 35 1 1.1387 -6.2504 0.0737 36 1 0.6132 -6.5821 -1.6010 37 1 4.6330 -5.0691 -2.8156 38 1 5.8666 -5.9515 -3.7472 39 1 3.8067 -8.2337 -4.5787 40 1 5.5278 -8.4305 -4.1647 41 1 4.3052 -10.5261 -3.7121 42 1 3.1652 -9.6509 -2.6619 43 1 5.6948 -9.0097 -0.1352 44 1 3.9835 -8.7577 -0.5554 45 1 6.3853 -7.4967 -1.9567 46 1 5.2480 -6.6642 -0.8678 47 1 3.8994 -5.5782 0.2214 48 1 4.6417 -5.4299 -1.3869 49 1 3.2766 -3.4753 -1.9086 50 1 4.0118 -3.2070 -0.3043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036822898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:04 Heat of formation + Delta-G solvation = -101.406254 kcal Electronic energy + Delta-G solvation = -32787.284059 eV Core-core repulsion = 28536.464190 eV Total energy + Delta-G solvation = -4250.819869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -48.74654 -42.32857 -40.44303 -38.98665 -37.13993 -35.76803 -34.40383 -33.07307 -32.18393 -31.26139 -29.83942 -28.81333 -26.90137 -25.71276 -24.87663 -23.96251 -23.66941 -22.57703 -21.88621 -21.07726 -19.89945 -18.49166 -17.88040 -17.62617 -17.47130 -16.99483 -16.96481 -16.62996 -16.54354 -16.28179 -15.91890 -15.75612 -15.57747 -15.33776 -14.83909 -14.74154 -14.62188 -14.29801 -14.11887 -13.90573 -13.50287 -13.35896 -13.27269 -13.05646 -13.00211 -12.72296 -12.59584 -12.50791 -12.25407 -12.19896 -12.00653 -11.98769 -11.79616 -11.70478 -11.58554 -11.51410 -11.42756 -11.03153 -10.67943 -10.56923 -10.37857 -9.73605 -8.87723 -7.84354 -5.16840 1.45446 1.46852 1.48619 1.56795 1.85409 2.51062 2.92004 3.10367 3.21359 3.34752 3.43718 3.50565 3.68486 3.72352 3.84517 3.92298 3.97579 4.02549 4.14694 4.16142 4.20760 4.27796 4.35164 4.41955 4.44338 4.52349 4.58387 4.59236 4.65586 4.68071 4.73889 4.78181 4.79070 4.85515 4.89163 4.98107 5.03844 5.05344 5.05653 5.13426 5.20395 5.42937 5.52563 5.53944 5.65128 5.75000 6.20262 6.21650 6.30860 7.03899 7.08984 7.79972 8.49289 9.28656 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.003345 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.150831 B = 8369.469082 C = 8838.725429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.971 3.029 4 H -0.292 1.292 5 H -0.301 1.301 6 H -0.261 1.261 7 C -0.229 4.229 8 H 0.092 0.908 9 N -0.615 5.615 10 C 0.182 3.818 11 C -0.122 4.122 12 C -0.110 4.110 13 H 0.058 0.942 14 C 0.135 3.865 15 N -0.604 5.604 16 C 0.519 3.481 17 O -0.569 6.569 18 C -0.110 4.110 19 C 0.052 3.948 20 F -0.230 7.230 21 C -0.125 4.125 22 C 0.053 3.947 23 O -0.393 6.393 24 C 0.056 3.944 25 C -0.157 4.157 26 C 0.092 3.908 27 C -0.127 4.127 28 C 0.159 3.841 29 H 0.025 0.975 30 H 0.244 0.756 31 H 0.005 0.995 32 H 0.013 0.987 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.050 0.950 43 H 0.124 0.876 44 H 0.032 0.968 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.096 0.904 48 H 0.127 0.873 49 H 0.053 0.947 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.253 -17.587 -2.961 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.220 1.220 5 H -0.228 1.228 6 H -0.185 1.185 7 C -0.358 4.358 8 H 0.110 0.890 9 N -0.340 5.340 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.130 4.130 13 H 0.076 0.924 14 C 0.013 3.987 15 N -0.336 5.336 16 C 0.308 3.692 17 O -0.449 6.449 18 C -0.114 4.114 19 C -0.003 4.003 20 F -0.211 7.211 21 C -0.163 4.163 22 C -0.023 4.023 23 O -0.312 6.312 24 C -0.021 4.021 25 C -0.194 4.194 26 C -0.029 4.029 27 C -0.167 4.167 28 C 0.053 3.947 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.024 0.976 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.142 0.858 44 H 0.050 0.950 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.114 0.886 48 H 0.145 0.855 49 H 0.072 0.928 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.891 -17.907 -3.123 22.877 hybrid contribution -0.890 1.787 -0.194 2.005 sum 13.001 -16.120 -3.317 20.973 Atomic orbital electron populations 1.70179 1.06499 1.25067 1.58567 1.25630 0.96423 1.01010 1.03170 0.85152 0.78210 0.79626 0.76978 1.21988 1.22772 1.18495 1.19433 0.91902 0.83446 1.40978 0.89017 1.44483 1.02348 1.02005 1.85124 1.21276 0.84095 0.91672 0.97213 1.22568 0.96590 0.96051 1.00828 1.22450 0.96682 0.95014 0.98851 0.92372 1.21454 0.81621 0.94629 1.01012 1.48310 1.08617 1.34005 1.42645 1.20845 0.90797 0.79767 0.77834 1.90618 1.52081 1.43199 1.58986 1.21583 0.92586 0.98241 0.98952 1.22763 0.97168 0.96690 0.83632 1.92764 1.78983 1.96757 1.52606 1.21997 1.03818 0.93154 0.97285 1.22777 0.93385 0.97639 0.88516 1.87891 1.61968 1.47620 1.33764 1.22704 1.01206 0.86658 0.91488 1.22768 1.00331 1.00044 0.96291 1.22639 0.90679 0.88484 1.01108 1.21896 0.97486 0.96164 1.01105 1.20850 0.93199 0.85357 0.95337 0.95756 0.94680 0.97647 0.96890 0.90199 0.90832 0.89662 0.90036 0.88539 0.85590 0.91498 0.88081 0.87740 0.93219 0.85819 0.95000 0.86478 0.86730 0.88645 0.85533 0.92779 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.26 10.49 21.65 0.23 -57.03 16 2 C -0.07 -3.88 5.48 84.86 0.46 -3.41 16 3 Si 0.97 44.65 29.56 68.60 2.03 46.68 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.23 -12.10 9.85 84.03 0.83 -11.28 16 8 H 0.09 4.48 7.27 -2.91 -0.02 4.46 16 9 N -0.62 -30.01 3.35 -669.89 -2.24 -32.26 16 10 C 0.18 8.95 5.45 86.85 0.47 9.42 16 11 C -0.12 -4.43 6.54 31.63 0.21 -4.22 16 12 C -0.11 -3.72 2.86 -9.98 -0.03 -3.75 16 13 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 14 C 0.14 3.78 5.94 85.90 0.51 4.29 16 15 N -0.60 -14.82 3.00 -818.03 -2.45 -17.28 16 16 C 0.52 13.36 5.00 87.66 0.44 13.80 16 17 O -0.57 -18.72 13.26 -3.03 -0.04 -18.76 16 18 C -0.11 -2.00 0.36 -52.81 -0.02 -2.02 16 19 C 0.05 0.87 6.02 71.98 0.43 1.30 16 20 F -0.23 -5.95 16.53 44.97 0.74 -5.20 16 21 C -0.12 -2.38 4.35 30.75 0.13 -2.25 16 22 C 0.05 1.11 6.56 72.08 0.47 1.58 16 23 O -0.39 -7.95 10.77 -148.98 -1.60 -9.55 16 24 C 0.06 0.87 6.62 72.01 0.48 1.34 16 25 C -0.16 -1.85 4.54 30.68 0.14 -1.71 16 26 C 0.09 1.79 3.83 86.68 0.33 2.13 16 27 C -0.13 -3.63 5.30 30.43 0.16 -3.47 16 28 C 0.16 5.84 2.57 45.51 0.12 5.95 16 29 H 0.03 0.90 7.92 -2.38 -0.02 0.88 16 30 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.01 0.29 7.78 -2.39 -0.02 0.27 16 32 H 0.01 0.72 7.24 -2.39 -0.02 0.70 16 33 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 36 H 0.08 2.45 7.04 -2.39 -0.02 2.44 16 37 H 0.10 1.58 4.59 -2.38 -0.01 1.57 16 38 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.56 7.65 -2.39 -0.02 1.54 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 1.31 5.84 -2.39 -0.01 1.30 16 43 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.03 0.62 7.38 -2.39 -0.02 0.60 16 45 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.11 1.00 4.40 -2.39 -0.01 0.99 16 47 H 0.10 1.49 7.99 -2.39 -0.02 1.47 16 48 H 0.13 1.69 2.54 -2.39 -0.01 1.69 16 49 H 0.05 1.71 7.85 -2.38 -0.02 1.69 16 50 H 0.08 2.34 7.64 -2.39 -0.02 2.32 16 Total: -1.00 -73.55 364.09 2.75 -70.81 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.95 Total: 14.88 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.14 Total: 7.71 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -4.47 Total: -106.56 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -1.64 Total: -28.31 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.74 Total: -5.20 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -73.55 2.75 -70.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.598 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds