Wall clock time and date at job start Sat Apr 11 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00083 * 2 1 4 4 H 1.48501 * 109.46971 * 274.98130 * 3 2 1 5 5 H 1.48497 * 109.47463 * 34.98077 * 3 2 1 6 6 H 1.48498 * 109.47486 * 154.98329 * 3 2 1 7 7 C 1.38817 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99377 * 186.55036 * 7 2 1 9 9 N 1.36932 * 119.99910 * 6.82476 * 7 2 1 10 10 C 1.47017 * 125.65002 * 353.58689 * 9 7 2 11 11 C 1.54329 * 107.27114 * 181.02598 * 10 9 7 12 12 C 1.55155 * 102.94231 * 22.19247 * 11 10 9 13 13 H 1.08993 * 111.00885 * 82.57210 * 12 11 10 14 14 C 1.52998 * 111.00401 * 206.38845 * 12 11 10 15 15 C 1.53035 * 109.46144 * 300.02756 * 14 12 11 16 16 C 1.53194 * 109.31726 * 178.60235 * 15 14 12 17 17 N 1.46925 * 108.76214 * 54.65271 * 16 15 14 18 18 C 1.34776 * 120.63237 * 126.41284 * 17 16 15 19 19 O 1.21280 * 120.00538 * 179.97438 * 18 17 16 20 20 C 1.50705 * 119.99560 * 359.97079 * 18 17 16 21 21 F 1.39891 * 110.46007 * 310.70433 * 20 18 17 22 22 C 1.54505 * 110.50957 * 188.09668 * 20 18 17 23 23 C 1.54475 * 104.06696 * 241.35776 * 22 20 18 24 24 O 1.44422 * 104.80194 * 23.97938 * 23 22 20 25 25 C 1.44790 * 105.29684 * 319.45420 * 24 23 22 26 26 C 1.46934 * 118.74118 * 306.38191 * 17 16 15 27 27 C 1.53043 * 109.46033 * 179.97438 * 14 12 11 28 28 C 1.47425 * 125.64359 * 173.28073 * 9 7 2 29 29 H 0.97001 * 119.99507 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.88107 * 300.43958 * 10 9 7 31 31 H 1.08997 * 109.88462 * 61.60733 * 10 9 7 32 32 H 1.08997 * 110.71961 * 140.55889 * 11 10 9 33 33 H 1.09001 * 110.71873 * 263.65250 * 11 10 9 34 34 H 1.09006 * 109.46341 * 59.99835 * 14 12 11 35 35 H 1.09002 * 109.49730 * 298.56256 * 15 14 12 36 36 H 1.08999 * 109.50010 * 58.66348 * 15 14 12 37 37 H 1.09002 * 109.59664 * 294.86945 * 16 15 14 38 38 H 1.08994 * 109.58837 * 174.43556 * 16 15 14 39 39 H 1.09000 * 110.51526 * 0.02562 * 22 20 18 40 40 H 1.09002 * 110.51109 * 122.71424 * 22 20 18 41 41 H 1.09000 * 110.37584 * 142.81032 * 23 22 20 42 42 H 1.09002 * 110.37112 * 265.03984 * 23 22 20 43 43 H 1.08996 * 110.42293 * 281.77700 * 25 24 23 44 44 H 1.08996 * 110.48665 * 159.32640 * 25 24 23 45 45 H 1.08997 * 109.58543 * 293.82561 * 26 17 16 46 46 H 1.08999 * 109.58369 * 173.39385 * 26 17 16 47 47 H 1.08994 * 109.49896 * 301.33842 * 27 14 12 48 48 H 1.09001 * 109.49862 * 61.43478 * 27 14 12 49 49 H 1.09000 * 110.36877 * 274.74125 * 28 9 7 50 50 H 1.08998 * 110.37238 * 37.06918 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5044 2.6200 0.8026 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0849 -1.2052 0.1072 9 7 1.3328 -2.3839 -0.1399 10 6 -0.1293 -2.5355 -0.1660 11 6 -0.4312 -4.0416 -0.3151 12 6 0.8694 -4.7097 0.2039 13 1 0.8677 -4.7754 1.2918 14 6 1.0655 -6.0904 -0.4256 15 6 -0.1230 -6.9865 -0.0697 16 6 0.0597 -8.3565 -0.7303 17 7 1.3656 -8.9014 -0.3350 18 6 1.4600 -10.1290 0.2134 19 8 2.5439 -10.5678 0.5351 20 6 0.2186 -10.9563 0.4268 21 9 -0.7680 -10.2009 1.0693 22 6 0.5477 -12.2250 1.2450 23 6 0.1836 -13.3885 0.2963 24 8 0.2696 -12.8237 -1.0302 25 6 -0.3074 -11.5003 -0.9200 26 6 2.5669 -8.0829 -0.5493 27 6 2.3558 -6.7159 0.1091 28 6 1.9489 -3.7141 -0.2962 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5574 -2.1619 0.7642 31 1 -0.5436 -1.9888 -1.0131 32 1 -1.2838 -4.3268 0.3013 33 1 -0.6094 -4.2977 -1.3595 34 1 1.1325 -5.9895 -1.5089 35 1 -0.1757 -7.1082 1.0122 36 1 -1.0444 -6.5290 -0.4301 37 1 0.0221 -8.2477 -1.8142 38 1 -0.7319 -9.0295 -0.4009 39 1 1.6081 -12.2536 1.4955 40 1 -0.0602 -12.2649 2.1489 41 1 0.8960 -14.2060 0.4075 42 1 -0.8290 -13.7387 0.4965 43 1 -1.3956 -11.5598 -0.9061 44 1 0.0285 -10.8681 -1.7418 45 1 2.7337 -7.9519 -1.6185 46 1 3.4294 -8.5754 -0.1004 47 1 3.1991 -6.0658 -0.1241 48 1 2.2795 -6.8402 1.1893 49 1 2.1854 -3.9019 -1.3435 50 1 2.8474 -3.7904 0.3161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039152037.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:48 Heat of formation + Delta-G solvation = -120.624240 kcal Electronic energy + Delta-G solvation = -31127.424132 eV Core-core repulsion = 26875.770908 eV Total energy + Delta-G solvation = -4251.653223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.30096 -41.54436 -40.20955 -39.39323 -38.02210 -35.29554 -33.62405 -32.90894 -32.20256 -30.93337 -30.36154 -29.18542 -27.00655 -25.79636 -24.46640 -24.41066 -23.27891 -21.84982 -21.67871 -20.90700 -20.36731 -18.85375 -18.70323 -18.05587 -17.83064 -16.93650 -16.79321 -16.47623 -16.21357 -16.11818 -15.80806 -15.76890 -15.42827 -15.14367 -14.97204 -14.66129 -14.41382 -14.19485 -14.06196 -13.85272 -13.77876 -13.46853 -13.29769 -13.20209 -12.90996 -12.75681 -12.72799 -12.62272 -12.31563 -12.23087 -12.16789 -12.00065 -11.88212 -11.81748 -11.62166 -11.35485 -11.28125 -11.07723 -10.98113 -10.72725 -10.68859 -9.79383 -8.87034 -7.86576 -5.20481 1.16428 1.44051 1.46006 1.54873 1.68988 2.48931 2.70852 2.77146 3.06436 3.19457 3.31370 3.60501 3.67855 3.72460 3.80281 3.91360 3.98646 4.07074 4.14308 4.20162 4.27070 4.34894 4.41460 4.42626 4.44711 4.51117 4.58516 4.66423 4.74070 4.74738 4.78486 4.82512 4.88207 4.93535 4.97094 5.01386 5.03649 5.12014 5.16322 5.27339 5.41591 5.44729 5.48960 5.55123 5.59583 5.73518 5.79590 6.16171 6.21361 6.79712 7.11115 7.79753 8.44744 9.24374 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033958 B = 0.002198 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.344030 B =12733.986643 C =13146.706392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.632 5.632 10 C 0.181 3.819 11 C -0.120 4.120 12 C -0.078 4.078 13 H 0.062 0.938 14 C -0.064 4.064 15 C -0.122 4.122 16 C 0.088 3.912 17 N -0.595 5.595 18 C 0.502 3.498 19 O -0.559 6.559 20 C 0.070 3.930 21 F -0.178 7.178 22 C -0.173 4.173 23 C 0.046 3.954 24 O -0.382 6.382 25 C 0.036 3.964 26 C 0.113 3.887 27 C -0.123 4.123 28 C 0.137 3.863 29 H 0.246 0.754 30 H 0.000 1.000 31 H 0.006 0.994 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.027 0.973 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 -28.192 -1.666 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.372 4.372 8 H 0.097 0.903 9 N -0.358 5.358 10 C 0.056 3.944 11 C -0.158 4.158 12 C -0.098 4.098 13 H 0.080 0.920 14 C -0.083 4.083 15 C -0.160 4.160 16 C -0.034 4.034 17 N -0.327 5.327 18 C 0.288 3.712 19 O -0.438 6.438 20 C 0.048 3.952 21 F -0.158 7.158 22 C -0.211 4.211 23 C -0.030 4.030 24 O -0.301 6.301 25 C -0.041 4.041 26 C -0.009 4.009 27 C -0.161 4.161 28 C 0.012 3.988 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.025 0.975 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.111 0.889 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.073 0.927 49 H 0.044 0.956 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.021 -28.277 -1.660 28.486 hybrid contribution 0.349 1.887 0.566 2.001 sum -2.673 -26.390 -1.093 26.547 Atomic orbital electron populations 1.70214 1.06316 1.25199 1.58195 1.25690 0.96640 1.01068 1.02740 0.85081 0.77839 0.79259 0.77325 1.21328 1.22128 1.19279 1.19462 0.91532 0.84125 1.42083 0.90253 1.44852 1.02659 1.02634 1.85659 1.20941 0.83716 0.92677 0.97067 1.22750 0.97536 0.94210 1.01347 1.22248 0.94795 0.93648 0.99091 0.91973 1.21020 0.94728 0.92097 1.00462 1.21891 0.98982 0.94143 1.00968 1.22394 0.83640 0.96159 1.01179 1.48249 1.09926 1.14860 1.59650 1.20780 0.90584 0.82314 0.77499 1.90682 1.29762 1.71194 1.52117 1.22542 0.84602 0.91505 0.96551 1.92866 1.62496 1.77508 1.82980 1.23573 1.05687 0.91481 1.00314 1.23646 1.03722 0.95744 0.79840 1.89258 1.82551 1.28148 1.30169 1.24210 1.00803 0.84899 0.94213 1.21710 0.87151 0.90379 1.01653 1.21905 0.98719 0.95415 1.00071 1.21818 0.95236 0.84437 0.97296 0.94452 0.98195 0.97545 0.90337 0.90555 0.89878 0.92349 0.88789 0.88630 0.87279 0.88817 0.86711 0.87065 0.88916 0.86761 0.86933 0.89274 0.90280 0.90227 0.92727 0.95570 0.94773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.32 10.36 21.65 0.22 -58.10 16 2 C -0.07 -3.99 5.48 84.86 0.47 -3.52 16 3 Si 0.98 46.56 29.56 68.60 2.03 48.58 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.24 -13.93 10.26 84.04 0.86 -13.07 16 8 H 0.08 4.37 7.84 -2.91 -0.02 4.34 16 9 N -0.63 -32.98 3.39 -691.55 -2.35 -35.32 16 10 C 0.18 9.00 5.38 86.73 0.47 9.47 16 11 C -0.12 -4.11 5.27 31.78 0.17 -3.94 16 12 C -0.08 -2.46 2.58 -9.32 -0.02 -2.48 16 13 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 14 C -0.06 -1.42 1.68 -10.77 -0.02 -1.44 16 15 C -0.12 -2.20 5.16 30.67 0.16 -2.04 16 16 C 0.09 1.27 5.32 86.36 0.46 1.73 16 17 N -0.60 -11.51 2.97 -818.88 -2.43 -13.94 16 18 C 0.50 11.18 6.71 87.66 0.59 11.77 16 19 O -0.56 -16.25 14.73 -3.03 -0.04 -16.29 16 20 C 0.07 1.14 1.17 -10.52 -0.01 1.13 16 21 F -0.18 -2.91 14.39 44.97 0.65 -2.27 16 22 C -0.17 -2.47 6.51 31.61 0.21 -2.26 16 23 C 0.05 0.52 7.63 72.48 0.55 1.07 16 24 O -0.38 -6.30 11.66 -148.98 -1.74 -8.04 16 25 C 0.04 0.46 6.16 72.49 0.45 0.90 16 26 C 0.11 2.26 6.43 86.36 0.56 2.82 16 27 C -0.12 -2.69 5.24 30.67 0.16 -2.53 16 28 C 0.14 5.45 5.95 86.94 0.52 5.97 16 29 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 31 H 0.01 0.35 7.35 -2.39 -0.02 0.34 16 32 H 0.08 2.36 8.09 -2.39 -0.02 2.34 16 33 H 0.08 2.32 8.04 -2.39 -0.02 2.31 16 34 H 0.08 1.75 8.07 -2.38 -0.02 1.73 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.53 7.21 -2.39 -0.02 1.51 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.35 4.30 -2.39 -0.01 1.34 16 39 H 0.09 1.75 6.54 -2.39 -0.02 1.73 16 40 H 0.11 1.23 8.06 -2.39 -0.02 1.21 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.11 0.87 8.12 -2.39 -0.02 0.85 16 44 H 0.11 1.29 7.25 -2.39 -0.02 1.27 16 45 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.82 7.01 -2.39 -0.02 1.80 16 47 H 0.08 1.79 7.45 -2.39 -0.02 1.77 16 48 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.03 1.02 7.99 -2.39 -0.02 1.00 16 50 H 0.03 1.35 8.05 -2.39 -0.02 1.33 16 Total: -1.00 -74.73 379.55 2.82 -71.91 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.93 Total: 9.90 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.55 Total: 3.57 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -4.56 Total: -107.37 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -1.78 Total: -24.33 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.65 Total: -2.27 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -74.73 2.82 -71.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039152037.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.713 kcal (2) G-P(sol) polarization free energy of solvation -74.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds