Wall clock time and date at job start Sat Apr 11 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00317 * 2 1 4 4 H 1.48499 * 109.46745 * 269.99881 * 3 2 1 5 5 H 1.48497 * 109.46867 * 29.99607 * 3 2 1 6 6 H 1.48502 * 109.47225 * 149.99918 * 3 2 1 7 7 C 1.38814 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00065 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.47443 * 126.05790 * 0.02562 * 9 7 2 11 11 C 1.56547 * 107.35231 * 181.70453 * 10 9 7 12 12 C 1.56030 * 101.68631 * 22.62994 * 11 10 9 13 13 H 1.08997 * 112.85883 * 202.62995 * 12 11 10 14 14 C 1.53097 * 106.38851 * 78.80078 * 12 11 10 15 15 C 1.52839 * 110.57382 * 195.43970 * 14 12 11 16 16 N 1.47145 * 107.98292 * 57.33983 * 15 14 12 17 17 C 1.34783 * 121.21527 * 122.71211 * 16 15 14 18 18 O 1.21286 * 119.99750 * 185.00715 * 17 16 15 19 19 C 1.50695 * 120.00190 * 5.00689 * 17 16 15 20 20 C 1.53003 * 109.54064 * 55.32225 * 19 17 16 21 21 F 1.39889 * 109.47309 * 65.93021 * 20 19 17 22 22 C 1.53178 * 109.61714 * 175.54297 * 19 17 16 23 23 C 1.53090 * 109.16440 * 62.92979 * 22 19 17 24 24 O 1.42901 * 109.41459 * 57.61099 * 23 22 19 25 25 C 1.42903 * 114.09806 * 298.84341 * 24 23 22 26 26 C 1.53090 * 109.41600 * 61.15559 * 25 24 23 27 27 C 1.46754 * 117.56572 * 302.98109 * 16 15 14 28 28 C 1.46470 * 126.06368 * 179.97438 * 9 7 2 29 29 H 1.08998 * 108.42992 * 269.90295 * 28 9 7 30 30 H 0.96998 * 119.99927 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.90237 * 300.99979 * 10 9 7 32 32 H 1.08995 * 109.89946 * 62.06537 * 10 9 7 33 33 H 1.08999 * 110.85504 * 264.82041 * 11 10 9 34 34 H 1.09005 * 111.57726 * 140.76004 * 11 10 9 35 35 H 1.08998 * 109.25364 * 75.15293 * 14 12 11 36 36 H 1.09001 * 109.22259 * 315.70030 * 14 12 11 37 37 H 1.09003 * 109.75707 * 297.71361 * 15 14 12 38 38 H 1.09007 * 109.75501 * 176.96503 * 15 14 12 39 39 H 1.08999 * 109.47071 * 305.92517 * 20 19 17 40 40 H 1.08998 * 109.46791 * 185.92977 * 20 19 17 41 41 H 1.09001 * 109.52403 * 182.83838 * 22 19 17 42 42 H 1.09004 * 109.52005 * 303.02216 * 22 19 17 43 43 H 1.08999 * 109.48105 * 297.63088 * 23 22 19 44 44 H 1.08998 * 109.48779 * 177.59918 * 23 22 19 45 45 H 1.09004 * 109.47776 * 301.17717 * 25 24 23 46 46 H 1.09001 * 109.49127 * 181.14705 * 25 24 23 47 47 H 1.09003 * 109.52490 * 182.49094 * 26 25 24 48 48 H 1.08996 * 109.52546 * 62.30232 * 26 25 24 49 49 H 1.08995 * 109.22900 * 172.57934 * 27 16 15 50 50 H 1.08996 * 109.23120 * 291.94027 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.1407 -2.5437 0.0017 11 6 -0.4474 -4.0781 0.0476 12 6 0.8718 -4.6460 0.6572 13 1 1.0292 -5.6982 0.4202 14 6 0.7962 -4.3901 2.1648 15 6 2.1735 -4.5532 2.8070 16 7 3.0988 -3.6238 2.1397 17 6 3.7798 -2.6941 2.8386 18 8 4.4665 -1.8809 2.2571 19 6 3.6879 -2.6649 4.3424 20 6 4.0780 -4.0330 4.9056 21 9 5.4297 -4.2779 4.6413 22 6 4.6343 -1.5946 4.8948 23 6 4.1886 -0.2202 4.3888 24 8 2.8368 0.0170 4.7867 25 6 1.8999 -0.9254 4.2610 26 6 2.2537 -2.3281 4.7618 27 6 3.2484 -3.7423 0.6846 28 6 1.9197 -3.7268 0.0017 29 1 2.0571 -4.0430 -1.0323 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5654 -2.0571 0.8798 32 1 -0.5603 -2.1062 -0.9041 33 1 -0.6104 -4.4714 -0.9559 34 1 -1.2978 -4.2978 0.6931 35 1 0.1029 -5.1003 2.6155 36 1 0.4360 -3.3762 2.3391 37 1 2.5220 -5.5777 2.6763 38 1 2.1151 -4.3159 3.8693 39 1 3.4700 -4.8061 4.4359 40 1 3.9107 -4.0436 5.9826 41 1 4.6043 -1.6090 5.9843 42 1 5.6502 -1.7961 4.5548 43 1 4.2575 -0.1933 3.3014 44 1 4.8329 0.5499 4.8131 45 1 1.9389 -0.9077 3.1718 46 1 0.8953 -0.6634 4.5931 47 1 1.5670 -3.0542 4.3267 48 1 2.1755 -2.3574 5.8486 49 1 3.8552 -2.9147 0.3176 50 1 3.7465 -4.6831 0.4504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042235496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:01 Heat of formation + Delta-G solvation = -101.795739 kcal Electronic energy + Delta-G solvation = -34543.342352 eV Core-core repulsion = 30292.505594 eV Total energy + Delta-G solvation = -4250.836758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.66482 -42.17623 -40.39858 -38.85392 -36.84890 -35.53010 -34.64667 -32.90360 -32.12012 -30.72782 -30.06145 -28.83737 -26.63191 -25.94419 -24.87799 -24.14395 -23.67575 -22.72962 -21.77886 -20.59467 -19.57660 -18.44639 -17.84577 -17.64738 -17.31473 -16.98495 -16.88100 -16.76088 -16.32436 -16.14010 -15.87251 -15.77852 -15.56568 -15.24588 -14.84461 -14.58407 -14.45997 -14.28531 -14.12654 -13.76921 -13.40353 -13.28238 -13.17590 -13.04177 -12.96874 -12.67988 -12.64520 -12.48060 -12.33964 -12.19282 -12.10518 -11.98763 -11.69339 -11.64079 -11.46742 -11.33861 -11.23929 -11.11042 -10.66946 -10.51323 -10.25745 -9.46337 -8.78625 -7.84380 -5.11930 1.29159 1.32753 1.42629 1.69965 2.10019 2.44951 2.86963 3.23294 3.24713 3.35282 3.52471 3.57447 3.77522 3.79434 3.91580 3.95353 4.06895 4.10124 4.21192 4.28240 4.30273 4.37807 4.46690 4.51183 4.53110 4.56104 4.62073 4.64219 4.70157 4.73531 4.76556 4.82445 4.87942 4.90842 4.99219 5.00877 5.04885 5.13679 5.16440 5.19022 5.36050 5.55004 5.67379 5.72231 5.74926 5.84855 6.16858 6.24026 6.58537 7.16875 7.32959 7.84581 8.46930 9.25796 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.007179 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.669418 B = 3899.210490 C = 5376.152468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.055 4.055 3 Si 0.938 3.062 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.189 4.189 8 H 0.062 0.938 9 N -0.603 5.603 10 C 0.186 3.814 11 C -0.129 4.129 12 C -0.083 4.083 13 H 0.120 0.880 14 C -0.122 4.122 15 C 0.081 3.919 16 N -0.592 5.592 17 C 0.520 3.480 18 O -0.577 6.577 19 C -0.110 4.110 20 C 0.061 3.939 21 F -0.227 7.227 22 C -0.117 4.117 23 C 0.044 3.956 24 O -0.397 6.397 25 C 0.057 3.943 26 C -0.138 4.138 27 C 0.118 3.882 28 C 0.142 3.858 29 H 0.022 0.978 30 H 0.241 0.759 31 H 0.011 0.989 32 H -0.006 1.006 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.102 0.898 45 H 0.014 0.986 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.123 0.877 49 H 0.049 0.951 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 -16.721 13.675 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.247 4.247 3 Si 0.770 3.230 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.319 4.319 8 H 0.080 0.920 9 N -0.328 5.328 10 C 0.061 3.939 11 C -0.167 4.167 12 C -0.102 4.102 13 H 0.138 0.862 14 C -0.160 4.160 15 C -0.039 4.039 16 N -0.324 5.324 17 C 0.308 3.692 18 O -0.457 6.457 19 C -0.114 4.114 20 C 0.007 3.993 21 F -0.208 7.208 22 C -0.155 4.155 23 C -0.032 4.032 24 O -0.316 6.316 25 C -0.019 4.019 26 C -0.175 4.175 27 C -0.005 4.005 28 C 0.035 3.965 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.029 0.971 32 H 0.013 0.987 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.144 0.856 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.120 0.880 45 H 0.033 0.967 46 H 0.120 0.880 47 H 0.126 0.874 48 H 0.141 0.859 49 H 0.067 0.933 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.407 -15.929 13.465 20.996 hybrid contribution 0.589 2.019 -1.250 2.446 sum 2.996 -13.910 12.215 18.753 Atomic orbital electron populations 1.70095 1.05118 1.24147 1.60060 1.25071 0.96115 0.99048 1.04513 0.85656 0.77772 0.82468 0.77139 1.21569 1.22076 1.21768 1.18929 0.89842 0.83542 1.39546 0.92000 1.44441 1.02158 1.00190 1.85976 1.21329 0.83460 0.92137 0.96961 1.23362 0.97897 0.94663 1.00806 1.22377 0.93656 0.98861 0.95326 0.86197 1.21869 0.97082 1.02254 0.94789 1.22633 0.88884 0.94123 0.98285 1.47883 1.43222 1.34102 1.07175 1.20725 0.78886 0.79523 0.90042 1.90624 1.43516 1.39291 1.72254 1.21567 0.99387 0.99196 0.91220 1.22735 0.77776 0.94311 1.04503 1.92753 1.36763 1.95253 1.96038 1.21904 0.98642 0.92938 1.02012 1.22830 0.82846 0.97911 0.99618 1.87816 1.17275 1.53372 1.73183 1.22534 0.93157 0.89580 0.96655 1.22485 0.93070 0.97246 1.04674 1.20838 0.97796 1.01280 0.80625 1.20706 0.93005 0.86382 0.96412 0.96077 0.94983 0.97090 0.98744 0.91761 0.89507 0.87295 0.94112 0.87624 0.86586 0.86881 0.85567 0.87392 0.91073 0.94491 0.88039 0.96745 0.88003 0.87444 0.85908 0.93284 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 10.38 21.65 0.22 -57.76 16 2 C -0.05 -3.29 5.49 84.86 0.47 -2.82 16 3 Si 0.94 51.38 29.55 68.60 2.03 53.40 16 4 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 5 H -0.29 -16.06 7.11 99.48 0.71 -15.35 16 6 H -0.29 -16.47 7.11 99.48 0.71 -15.76 16 7 C -0.19 -10.86 9.64 84.03 0.81 -10.05 16 8 H 0.06 3.78 6.38 -2.91 -0.02 3.77 16 9 N -0.60 -29.50 3.19 -673.15 -2.15 -31.65 16 10 C 0.19 8.73 4.67 87.44 0.41 9.14 16 11 C -0.13 -4.06 6.48 32.88 0.21 -3.85 16 12 C -0.08 -2.20 3.65 -9.36 -0.03 -2.23 16 13 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 14 C -0.12 -2.80 4.78 30.57 0.15 -2.65 16 15 C 0.08 1.61 3.98 86.20 0.34 1.95 16 16 N -0.59 -18.57 2.97 -826.51 -2.45 -21.02 16 17 C 0.52 18.68 5.09 87.65 0.45 19.13 16 18 O -0.58 -27.20 13.17 -3.05 -0.04 -27.24 16 19 C -0.11 -2.84 0.36 -52.81 -0.02 -2.86 16 20 C 0.06 1.03 6.02 71.98 0.43 1.47 16 21 F -0.23 -5.48 16.54 44.97 0.74 -4.74 16 22 C -0.12 -3.27 4.35 30.68 0.13 -3.13 16 23 C 0.04 1.59 6.55 72.01 0.47 2.07 16 24 O -0.40 -14.89 10.77 -148.98 -1.60 -16.50 16 25 C 0.06 2.03 6.62 72.01 0.48 2.51 16 26 C -0.14 -3.20 4.61 30.68 0.14 -3.06 16 27 C 0.12 4.23 5.54 85.18 0.47 4.70 16 28 C 0.14 5.26 2.97 44.20 0.13 5.39 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.01 0.58 7.03 -2.39 -0.02 0.56 16 32 H -0.01 -0.32 7.56 -2.39 -0.02 -0.33 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.31 7.97 -2.38 -0.02 2.29 16 35 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.31 6.67 -2.39 -0.02 1.30 16 37 H 0.11 1.38 8.11 -2.39 -0.02 1.36 16 38 H 0.12 1.73 2.72 -2.38 -0.01 1.73 16 39 H 0.11 1.41 4.62 -2.39 -0.01 1.40 16 40 H 0.13 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.07 2.15 7.73 -2.38 -0.02 2.13 16 43 H 0.04 1.71 5.65 -2.39 -0.01 1.70 16 44 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.01 0.67 7.38 -2.38 -0.02 0.66 16 46 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.11 2.17 4.51 -2.39 -0.01 2.16 16 48 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.05 2.24 5.33 -2.39 -0.01 2.23 16 50 H 0.09 2.43 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -82.84 360.08 2.75 -80.09 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.96 Total: 9.72 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 5.04 Total: 15.69 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -4.37 Total: -110.42 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.64 Total: -43.74 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.74 Total: -4.74 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.03 Total: 53.40 kcal Total: -82.84 2.75 -80.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042235496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.704 kcal (2) G-P(sol) polarization free energy of solvation -82.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds