Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34771 * 120.00083 * 2 1 4 4 O 1.21281 * 120.00502 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99981 * 359.97438 * 3 2 1 6 6 H 1.08999 * 109.49567 * 60.00690 * 5 3 2 7 7 C 1.53043 * 109.49519 * 180.02562 * 5 3 2 8 8 C 1.53041 * 109.53506 * 181.31396 * 7 5 3 9 9 C 1.53191 * 109.31670 * 298.64095 * 8 7 5 10 10 N 1.46927 * 108.77698 * 54.62945 * 9 8 7 11 11 C 1.34774 * 120.62612 * 126.39000 * 10 9 8 12 12 N 1.34776 * 120.00335 * 354.97042 * 11 10 9 13 13 O 1.21590 * 119.99830 * 174.96368 * 11 10 9 14 14 C 1.46931 * 118.76720 * 306.41649 * 10 9 8 15 15 C 1.46505 * 119.99954 * 179.97438 * 2 1 3 16 16 H 1.08998 * 110.63530 * 183.14654 * 15 2 1 17 17 C 1.54325 * 110.71856 * 306.47942 * 15 2 1 18 18 N 1.47016 * 107.26997 * 140.56014 * 17 15 2 19 19 C 1.36936 * 125.64892 * 181.10685 * 18 17 15 20 20 H 1.07997 * 120.00048 * 359.96747 * 19 18 17 21 21 C 1.38812 * 119.99912 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00113 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99968 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47195 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47302 * 119.99568 * 23 21 19 26 26 H 1.48495 * 109.47215 * 239.99605 * 23 21 19 27 27 C 1.47422 * 108.70463 * 1.05440 * 18 17 15 28 28 C 1.54908 * 104.83342 * 335.87443 * 27 18 17 29 29 H 1.08994 * 111.00757 * 278.93515 * 28 27 18 30 30 O 1.42901 * 111.04049 * 155.09488 * 28 27 18 31 31 H 1.09004 * 109.46862 * 90.00358 * 1 2 3 32 32 H 1.08998 * 109.47402 * 210.00338 * 1 2 3 33 33 H 1.09001 * 109.47601 * 330.00239 * 1 2 3 34 34 H 1.08988 * 109.46579 * 301.33585 * 7 5 3 35 35 H 1.09002 * 109.46099 * 61.31525 * 7 5 3 36 36 H 1.09008 * 109.49581 * 58.59160 * 8 7 5 37 37 H 1.08993 * 109.49959 * 178.64965 * 8 7 5 38 38 H 1.09004 * 109.59097 * 174.42170 * 9 8 7 39 39 H 1.09007 * 109.58390 * 294.70478 * 9 8 7 40 40 H 0.96991 * 120.00045 * 5.05627 * 12 11 10 41 41 H 0.97007 * 119.99845 * 185.06771 * 12 11 10 42 42 H 1.08996 * 109.56202 * 293.78272 * 14 10 9 43 43 H 1.09003 * 109.61635 * 173.35561 * 14 10 9 44 44 H 1.09002 * 109.88209 * 259.97226 * 17 15 2 45 45 H 1.08997 * 109.88608 * 21.13841 * 17 15 2 46 46 H 0.97003 * 119.99698 * 179.97438 * 22 21 19 47 47 H 1.09004 * 110.37375 * 217.03687 * 27 18 17 48 48 H 1.09003 * 110.46197 * 94.76036 * 27 18 17 49 49 H 0.96696 * 113.99824 * 67.78551 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.7582 2.5307 0.8891 7 6 2.3793 3.6360 -0.0011 8 6 1.6154 4.9616 0.0314 9 6 0.7400 5.0728 -1.2209 10 7 -0.1186 3.8835 -1.3049 11 6 -1.4549 4.0086 -1.4268 12 7 -2.0255 5.2283 -1.3710 13 8 -2.1458 3.0210 -1.5874 14 6 0.5068 2.5549 -1.2528 15 6 2.1975 -1.2688 0.0006 16 1 3.2716 -1.0922 0.0565 17 6 1.7272 -2.1702 1.1616 18 7 1.6777 -3.5482 0.6518 19 6 1.2871 -4.6497 1.3655 20 1 0.9809 -4.5448 2.3959 21 6 1.2848 -5.9010 0.7647 22 7 1.6575 -6.0288 -0.4911 23 14 0.7525 -7.4037 1.7386 24 1 0.3845 -6.9947 3.1180 25 1 -0.4202 -8.0315 1.0784 26 1 1.8706 -8.3793 1.7937 27 6 2.1171 -3.5478 -0.7554 28 6 1.8435 -2.1075 -1.2558 29 1 0.7957 -1.9808 -1.5277 30 8 2.6981 -1.7741 -2.3516 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 3.0216 3.5654 0.8766 35 1 2.9903 3.5913 -0.9027 36 1 0.9851 4.9967 0.9201 37 1 2.3240 5.7894 0.0552 38 1 0.1201 5.9671 -1.1553 39 1 1.3738 5.1317 -2.1057 40 1 -1.4701 6.0215 -1.3168 41 1 -2.9918 5.3128 -1.3848 42 1 1.1211 2.4057 -2.1407 43 1 -0.2665 1.7880 -1.2079 44 1 2.4331 -2.1064 1.9897 45 1 0.7356 -1.8614 1.4925 46 1 1.6562 -6.9034 -0.9107 47 1 1.5374 -4.2669 -1.3342 48 1 3.1806 -3.7771 -0.8226 49 1 2.5147 -2.2730 -3.1593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047450108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = -64.653533 kcal Electronic energy + Delta-G solvation = -31569.390821 eV Core-core repulsion = 27340.084631 eV Total energy + Delta-G solvation = -4229.306190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 8.63 seconds Orbital eigenvalues (eV) -40.96127 -39.84045 -38.10174 -37.09135 -35.24582 -34.80632 -34.26093 -32.63737 -32.17745 -31.22717 -28.56335 -27.25756 -26.75182 -25.68120 -24.79832 -23.82575 -22.06138 -20.46087 -20.36325 -19.75449 -18.98586 -18.52210 -17.43274 -17.15863 -17.08211 -16.40061 -15.89823 -15.76521 -15.22060 -15.18075 -14.89575 -14.59763 -14.23108 -13.95332 -13.83167 -13.59025 -13.45188 -13.29872 -13.02447 -12.94081 -12.56768 -12.22656 -12.09761 -11.77161 -11.64284 -11.47885 -11.33437 -11.21275 -11.15555 -10.93827 -10.84852 -10.81473 -10.47046 -10.15177 -10.00437 -9.92548 -9.70099 -9.67375 -9.21338 -8.92789 -8.72368 -8.31640 -6.92673 -5.71949 -3.15451 2.36581 2.78268 2.92919 3.13068 3.37223 3.42875 3.45315 3.73869 4.29344 4.41530 4.44167 4.54808 4.64287 4.68800 4.76576 4.94066 5.03935 5.20204 5.28147 5.35653 5.38585 5.42366 5.47170 5.50846 5.55012 5.62892 5.68177 5.71481 5.85634 5.91628 5.96357 6.03885 6.07059 6.14559 6.21036 6.42664 6.48076 6.59249 6.62480 6.92787 7.35634 7.51368 7.52409 7.60752 7.73670 8.18007 8.28277 8.30972 8.34016 9.13107 9.73691 10.36113 11.31628 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.002749 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.862231 B =10184.731268 C =10712.312203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.598 5.598 3 C 0.522 3.478 4 O -0.536 6.536 5 C -0.120 4.120 6 H 0.099 0.901 7 C -0.100 4.100 8 C -0.135 4.135 9 C 0.109 3.891 10 N -0.626 5.626 11 C 0.709 3.291 12 N -0.869 5.869 13 O -0.588 6.588 14 C 0.128 3.872 15 C 0.136 3.864 16 H 0.112 0.888 17 C 0.129 3.871 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.081 0.919 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.917 3.083 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.129 3.871 28 C 0.065 3.935 29 H 0.060 0.940 30 O -0.563 6.563 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.395 0.605 41 H 0.414 0.586 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.031 0.969 45 H 0.035 0.965 46 H 0.253 0.747 47 H 0.111 0.889 48 H 0.024 0.976 49 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 25.736 -2.335 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.330 5.330 3 C 0.308 3.692 4 O -0.412 6.412 5 C -0.142 4.142 6 H 0.117 0.883 7 C -0.138 4.138 8 C -0.173 4.173 9 C -0.015 4.015 10 N -0.364 5.364 11 C 0.409 3.591 12 N -0.440 5.440 13 O -0.466 6.466 14 C 0.004 3.996 15 C 0.032 3.968 16 H 0.129 0.871 17 C 0.003 3.997 18 N -0.326 5.326 19 C -0.352 4.352 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.748 3.252 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.003 3.997 28 C 0.004 3.996 29 H 0.078 0.922 30 O -0.368 6.368 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.225 0.775 41 H 0.246 0.754 42 H 0.091 0.909 43 H 0.129 0.871 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.064 0.936 47 H 0.129 0.871 48 H 0.042 0.958 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.952 25.166 -2.013 25.554 hybrid contribution -0.645 -0.696 0.169 0.964 sum -4.597 24.470 -1.845 24.966 Atomic orbital electron populations 1.22027 0.79634 1.03710 1.02216 1.47807 1.06889 1.05876 1.72390 1.20282 0.87850 0.84798 0.76251 1.90691 1.13747 1.87117 1.49645 1.21699 0.98194 0.93718 1.00631 0.88252 1.21327 0.96704 0.91532 1.04190 1.21956 0.99023 0.98476 0.97844 1.21708 0.93538 0.87173 0.99041 1.47230 1.04451 1.07384 1.77356 1.15848 0.81780 0.83981 0.77533 1.43165 1.11383 1.06858 1.82562 1.90991 1.61650 1.36953 1.56979 1.21736 0.97126 0.84290 0.96417 1.22155 0.98094 0.81563 0.94953 0.87051 1.21560 0.98307 0.85924 0.93949 1.44273 1.77961 1.01238 1.09171 1.19128 1.36846 0.84514 0.94692 0.90152 1.24812 1.01536 0.97622 0.96568 1.69770 1.53771 1.22390 1.11079 0.85958 0.77812 0.82646 0.78816 1.20459 1.21667 1.21679 1.22551 0.99127 0.91609 0.86419 1.23721 0.92408 0.97452 0.86018 0.92237 1.86441 1.60784 1.66605 1.22932 0.92035 0.89667 0.91057 0.90528 0.90740 0.91306 0.90114 0.90466 0.90880 0.77458 0.75442 0.90924 0.87071 0.95064 0.94762 0.93634 0.87107 0.95755 0.77961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 7.66 59.84 0.46 1.36 16 2 N -0.60 -9.61 2.89 -171.84 -0.50 -10.10 16 3 C 0.52 8.13 7.08 -10.98 -0.08 8.05 16 4 O -0.54 -10.25 15.35 5.56 0.09 -10.16 16 5 C -0.12 -1.34 1.86 -91.65 -0.17 -1.52 16 6 H 0.10 1.03 7.40 -51.93 -0.38 0.65 16 7 C -0.10 -0.95 4.46 -26.69 -0.12 -1.06 16 8 C -0.13 -0.81 6.08 -26.61 -0.16 -0.97 16 9 C 0.11 0.62 6.43 -3.71 -0.02 0.59 16 10 N -0.63 -5.69 2.97 -178.49 -0.53 -6.22 16 11 C 0.71 7.45 8.57 -86.92 -0.74 6.70 16 12 N -0.87 -5.15 8.79 27.63 0.24 -4.90 16 13 O -0.59 -8.85 16.61 5.29 0.09 -8.77 16 14 C 0.13 1.41 5.27 -3.71 -0.02 1.39 16 15 C 0.14 2.65 3.10 -66.09 -0.20 2.45 16 16 H 0.11 2.44 7.00 -51.93 -0.36 2.08 16 17 C 0.13 2.75 6.80 -3.07 -0.02 2.73 16 18 N -0.60 -15.23 3.39 -170.08 -0.58 -15.81 16 19 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.43 10.09 55.49 0.56 -25.87 16 23 Si 0.92 21.84 29.55 -169.99 -5.02 16.81 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 C 0.13 3.13 5.62 -2.53 -0.01 3.12 16 28 C 0.06 1.29 4.00 -24.58 -0.10 1.20 16 29 H 0.06 1.14 7.29 -51.93 -0.38 0.77 16 30 O -0.56 -10.64 13.47 -35.23 -0.47 -11.12 16 31 H 0.06 0.81 7.01 -51.93 -0.36 0.45 16 32 H 0.08 1.23 6.08 -51.93 -0.32 0.92 16 33 H 0.07 0.81 5.95 -51.93 -0.31 0.50 16 34 H 0.08 0.79 8.07 -51.94 -0.42 0.37 16 35 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 36 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.22 5.57 -51.93 -0.29 -0.07 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.39 1.17 6.29 -40.82 -0.26 0.91 16 41 H 0.41 2.04 8.93 -40.82 -0.36 1.67 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.11 1.39 3.62 -51.93 -0.19 1.20 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.03 0.69 5.93 -51.93 -0.31 0.38 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 48 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.37 5.51 9.12 45.56 0.42 5.93 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -36.01 374.39 -8.27 -44.28 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.33 Total: 8.83 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: -1.45 Total: 17.37 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.80 Total: -62.90 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.30 Total: -30.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.01 -8.27 -44.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047450108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.373 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.63 seconds