Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34771 * 120.00083 * 2 1 4 4 O 1.21281 * 120.00502 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99981 * 359.97438 * 3 2 1 6 6 H 1.08999 * 109.49567 * 60.00690 * 5 3 2 7 7 C 1.53043 * 109.49519 * 180.02562 * 5 3 2 8 8 C 1.53041 * 109.53506 * 181.31396 * 7 5 3 9 9 C 1.53191 * 109.31670 * 298.64095 * 8 7 5 10 10 N 1.46927 * 108.77698 * 54.62945 * 9 8 7 11 11 C 1.34774 * 120.62612 * 126.39000 * 10 9 8 12 12 N 1.34776 * 120.00335 * 354.97042 * 11 10 9 13 13 O 1.21590 * 119.99830 * 174.96368 * 11 10 9 14 14 C 1.46931 * 118.76720 * 306.41649 * 10 9 8 15 15 C 1.46505 * 119.99954 * 179.97438 * 2 1 3 16 16 H 1.08998 * 110.63530 * 183.14654 * 15 2 1 17 17 C 1.54325 * 110.71856 * 306.47942 * 15 2 1 18 18 N 1.47016 * 107.26997 * 140.56014 * 17 15 2 19 19 C 1.36936 * 125.64892 * 181.10685 * 18 17 15 20 20 H 1.07997 * 120.00048 * 359.96747 * 19 18 17 21 21 C 1.38812 * 119.99912 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00113 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99968 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47195 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47302 * 119.99568 * 23 21 19 26 26 H 1.48495 * 109.47215 * 239.99605 * 23 21 19 27 27 C 1.47422 * 108.70463 * 1.05440 * 18 17 15 28 28 C 1.54908 * 104.83342 * 335.87443 * 27 18 17 29 29 H 1.08994 * 111.00757 * 278.93515 * 28 27 18 30 30 O 1.42901 * 111.04049 * 155.09488 * 28 27 18 31 31 H 1.09004 * 109.46862 * 90.00358 * 1 2 3 32 32 H 1.08998 * 109.47402 * 210.00338 * 1 2 3 33 33 H 1.09001 * 109.47601 * 330.00239 * 1 2 3 34 34 H 1.08988 * 109.46579 * 301.33585 * 7 5 3 35 35 H 1.09002 * 109.46099 * 61.31525 * 7 5 3 36 36 H 1.09008 * 109.49581 * 58.59160 * 8 7 5 37 37 H 1.08993 * 109.49959 * 178.64965 * 8 7 5 38 38 H 1.09004 * 109.59097 * 174.42170 * 9 8 7 39 39 H 1.09007 * 109.58390 * 294.70478 * 9 8 7 40 40 H 0.96991 * 120.00045 * 5.05627 * 12 11 10 41 41 H 0.97007 * 119.99845 * 185.06771 * 12 11 10 42 42 H 1.08996 * 109.56202 * 293.78272 * 14 10 9 43 43 H 1.09003 * 109.61635 * 173.35561 * 14 10 9 44 44 H 1.09002 * 109.88209 * 259.97226 * 17 15 2 45 45 H 1.08997 * 109.88608 * 21.13841 * 17 15 2 46 46 H 0.97003 * 119.99698 * 179.97438 * 22 21 19 47 47 H 1.09004 * 110.37375 * 217.03687 * 27 18 17 48 48 H 1.09003 * 110.46197 * 94.76036 * 27 18 17 49 49 H 0.96696 * 113.99824 * 67.78551 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.7582 2.5307 0.8891 7 6 2.3793 3.6360 -0.0011 8 6 1.6154 4.9616 0.0314 9 6 0.7400 5.0728 -1.2209 10 7 -0.1186 3.8835 -1.3049 11 6 -1.4549 4.0086 -1.4268 12 7 -2.0255 5.2283 -1.3710 13 8 -2.1458 3.0210 -1.5874 14 6 0.5068 2.5549 -1.2528 15 6 2.1975 -1.2688 0.0006 16 1 3.2716 -1.0922 0.0565 17 6 1.7272 -2.1702 1.1616 18 7 1.6777 -3.5482 0.6518 19 6 1.2871 -4.6497 1.3655 20 1 0.9809 -4.5448 2.3959 21 6 1.2848 -5.9010 0.7647 22 7 1.6575 -6.0288 -0.4911 23 14 0.7525 -7.4037 1.7386 24 1 0.3845 -6.9947 3.1180 25 1 -0.4202 -8.0315 1.0784 26 1 1.8706 -8.3793 1.7937 27 6 2.1171 -3.5478 -0.7554 28 6 1.8435 -2.1075 -1.2558 29 1 0.7957 -1.9808 -1.5277 30 8 2.6981 -1.7741 -2.3516 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 3.0216 3.5654 0.8766 35 1 2.9903 3.5913 -0.9027 36 1 0.9851 4.9967 0.9201 37 1 2.3240 5.7894 0.0552 38 1 0.1201 5.9671 -1.1553 39 1 1.3738 5.1317 -2.1057 40 1 -1.4701 6.0215 -1.3168 41 1 -2.9918 5.3128 -1.3848 42 1 1.1211 2.4057 -2.1407 43 1 -0.2665 1.7880 -1.2079 44 1 2.4331 -2.1064 1.9897 45 1 0.7356 -1.8614 1.4925 46 1 1.6562 -6.9034 -0.9107 47 1 1.5374 -4.2669 -1.3342 48 1 3.1806 -3.7771 -0.8226 49 1 2.5147 -2.2730 -3.1593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047450108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = -94.724166 kcal Electronic energy + Delta-G solvation = -31570.694781 eV Core-core repulsion = 27340.084631 eV Total energy + Delta-G solvation = -4230.610150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 8.21 seconds Orbital eigenvalues (eV) -41.93304 -40.94372 -39.58632 -38.04841 -36.77806 -36.43180 -35.05801 -33.91732 -33.32517 -32.26093 -30.31155 -28.95868 -28.04429 -26.55120 -26.33510 -24.96677 -22.89812 -22.35882 -21.61030 -20.58723 -20.16474 -19.32086 -19.05964 -18.73733 -17.96294 -17.70829 -17.39148 -16.77563 -16.63620 -16.13162 -15.96330 -15.63333 -15.55829 -15.25850 -15.17251 -14.86723 -14.60388 -14.30783 -14.22176 -14.13622 -13.95656 -13.62465 -13.55733 -13.22092 -13.10011 -12.91628 -12.77035 -12.71235 -12.50667 -12.01546 -11.99961 -11.95772 -11.89532 -11.66051 -11.44132 -11.31430 -11.11501 -10.80275 -10.74620 -10.66436 -9.73916 -9.62645 -8.98335 -7.81795 -5.29069 1.41090 1.47537 1.48596 1.58875 1.75187 1.90315 2.15124 2.46757 3.06635 3.22399 3.29929 3.43226 3.65684 3.67288 3.75678 3.82529 3.97131 4.03070 4.07215 4.11199 4.17260 4.25898 4.40669 4.46324 4.51462 4.53602 4.55258 4.68478 4.74106 4.78144 4.89869 4.93166 4.95398 5.05276 5.17648 5.34540 5.37697 5.41477 5.44011 5.47059 5.66153 5.85087 6.05157 6.18916 6.32509 6.81754 6.93396 7.02904 7.06347 7.63674 7.67777 8.30471 9.20028 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.002749 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.862231 B =10184.731268 C =10712.312203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.597 5.597 3 C 0.517 3.483 4 O -0.575 6.575 5 C -0.106 4.106 6 H 0.115 0.885 7 C -0.099 4.099 8 C -0.124 4.124 9 C 0.103 3.897 10 N -0.623 5.623 11 C 0.703 3.297 12 N -0.847 5.847 13 O -0.639 6.639 14 C 0.132 3.868 15 C 0.148 3.852 16 H 0.085 0.915 17 C 0.131 3.869 18 N -0.617 5.617 19 C -0.240 4.240 20 H 0.086 0.914 21 C -0.064 4.064 22 N -0.948 5.948 23 Si 0.984 3.016 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.294 1.294 27 C 0.137 3.863 28 C 0.085 3.915 29 H 0.074 0.926 30 O -0.570 6.570 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.412 0.588 41 H 0.420 0.580 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.025 0.975 45 H 0.054 0.946 46 H 0.249 0.751 47 H 0.088 0.912 48 H -0.011 1.011 49 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 28.665 -1.731 29.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.329 5.329 3 C 0.306 3.694 4 O -0.454 6.454 5 C -0.128 4.128 6 H 0.133 0.867 7 C -0.138 4.138 8 C -0.162 4.162 9 C -0.019 4.019 10 N -0.360 5.360 11 C 0.402 3.598 12 N -0.418 5.418 13 O -0.521 6.521 14 C 0.008 3.992 15 C 0.043 3.957 16 H 0.103 0.897 17 C 0.005 3.995 18 N -0.345 5.345 19 C -0.368 4.368 20 H 0.104 0.896 21 C -0.256 4.256 22 N -0.598 5.598 23 Si 0.812 3.188 24 H -0.190 1.190 25 H -0.215 1.215 26 H -0.221 1.221 27 C 0.010 3.990 28 C 0.024 3.976 29 H 0.092 0.908 30 O -0.377 6.377 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.246 0.754 41 H 0.254 0.746 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.105 0.895 48 H 0.007 0.993 49 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.440 28.193 -1.408 28.748 hybrid contribution -0.126 -1.546 -0.045 1.552 sum -5.566 26.647 -1.452 27.261 Atomic orbital electron populations 1.22148 0.77710 1.04508 1.02853 1.47832 1.07868 1.04789 1.72366 1.21121 0.87635 0.85825 0.74788 1.90672 1.15718 1.87723 1.51279 1.21665 0.98265 0.91508 1.01349 0.86742 1.21350 0.96470 0.92845 1.03094 1.21921 0.99201 0.96859 0.98249 1.22004 0.93755 0.86914 0.99191 1.47197 1.04446 1.07521 1.76884 1.16074 0.81869 0.84466 0.77365 1.42945 1.11984 1.05993 1.80916 1.90958 1.62870 1.38966 1.59310 1.21494 0.96462 0.85499 0.95742 1.21702 0.97052 0.82978 0.93995 0.89680 1.21638 0.99115 0.84428 0.94322 1.44515 1.77821 1.02467 1.09697 1.19502 1.36642 0.85476 0.95229 0.89573 1.25669 1.01970 1.00387 0.97618 1.69996 1.54715 1.22607 1.12441 0.84922 0.76953 0.78779 0.78098 1.18970 1.21502 1.22144 1.22308 0.96384 0.93975 0.86295 1.23400 0.93145 0.94563 0.86518 0.90809 1.86414 1.60821 1.66850 1.23565 0.91534 0.90474 0.88514 0.91603 0.92007 0.90590 0.87646 0.86964 0.90261 0.75447 0.74642 0.91913 0.88401 0.95719 0.92787 0.94100 0.89464 0.99283 0.75821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.79 7.66 127.77 0.98 2.77 16 2 N -0.60 -19.02 2.89 -815.96 -2.35 -21.37 16 3 C 0.52 16.00 7.08 87.66 0.62 16.62 16 4 O -0.57 -22.39 15.35 -3.03 -0.05 -22.44 16 5 C -0.11 -2.21 1.86 -11.46 -0.02 -2.23 16 6 H 0.11 2.09 7.40 -2.39 -0.02 2.07 16 7 C -0.10 -1.72 4.46 30.62 0.14 -1.58 16 8 C -0.12 -1.04 6.08 30.67 0.19 -0.85 16 9 C 0.10 0.78 6.43 86.36 0.56 1.33 16 10 N -0.62 -9.71 2.97 -836.88 -2.49 -12.20 16 11 C 0.70 13.09 8.57 179.06 1.53 14.63 16 12 N -0.85 -7.22 8.79 -184.75 -1.62 -8.84 16 13 O -0.64 -18.49 16.61 -4.00 -0.07 -18.56 16 14 C 0.13 2.74 5.27 86.36 0.46 3.20 16 15 C 0.15 5.88 3.10 46.18 0.14 6.02 16 16 H 0.09 3.88 7.00 -2.39 -0.02 3.86 16 17 C 0.13 5.64 6.80 86.73 0.59 6.23 16 18 N -0.62 -32.16 3.39 -692.01 -2.35 -34.51 16 19 C -0.24 -13.36 10.27 84.03 0.86 -12.50 16 20 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 21 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 22 N -0.95 -55.91 10.09 21.65 0.22 -55.69 16 23 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 C 0.14 6.91 5.62 86.86 0.49 7.39 16 28 C 0.08 3.44 4.00 31.99 0.13 3.57 16 29 H 0.07 2.82 7.29 -2.39 -0.02 2.80 16 30 O -0.57 -21.74 13.47 -148.98 -2.01 -23.75 16 31 H 0.07 1.69 7.01 -2.38 -0.02 1.67 16 32 H 0.08 2.14 6.08 -2.39 -0.01 2.12 16 33 H 0.10 2.01 5.95 -2.39 -0.01 2.00 16 34 H 0.07 1.29 8.07 -2.39 -0.02 1.27 16 35 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 36 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.11 0.07 5.57 -2.38 -0.01 0.05 16 39 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.41 0.63 6.29 -92.72 -0.58 0.05 16 41 H 0.42 2.91 8.93 -92.70 -0.83 2.08 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.10 2.33 3.62 -2.39 -0.01 2.32 16 44 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.05 2.13 5.93 -2.39 -0.01 2.12 16 46 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 47 H 0.09 4.84 5.87 -2.39 -0.01 4.83 16 48 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 49 H 0.39 11.57 9.12 -74.06 -0.68 10.89 16 Total: -1.00 -81.34 374.39 -2.63 -83.96 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -1.06 Total: 24.61 kcal Atomic # 6 Polarization: 34.36 SS G_CDS: 7.12 Total: 41.49 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -8.60 Total: -132.61 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -2.12 Total: -64.74 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -81.34 -2.63 -83.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047450108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.763 kcal (2) G-P(sol) polarization free energy of solvation -81.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.21 seconds