Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 119.99760 * 2 1 4 4 O 1.21279 * 120.00277 * 4.51072 * 3 2 1 5 5 C 1.50700 * 119.99859 * 184.51616 * 3 2 1 6 6 H 1.09003 * 109.49719 * 322.58173 * 5 3 2 7 7 C 1.53042 * 109.49801 * 202.48683 * 5 3 2 8 8 C 1.53040 * 109.54047 * 178.68206 * 7 5 3 9 9 C 1.53184 * 109.31300 * 61.36531 * 8 7 5 10 10 N 1.46961 * 108.89005 * 305.44520 * 9 8 7 11 11 C 1.34778 * 120.65660 * 233.53881 * 10 9 8 12 12 N 1.34779 * 119.99667 * 4.98042 * 11 10 9 13 13 O 1.21588 * 120.00354 * 184.98012 * 11 10 9 14 14 C 1.46931 * 118.71457 * 53.35398 * 10 9 8 15 15 C 1.46496 * 120.00328 * 179.97438 * 2 1 3 16 16 H 1.08996 * 110.88720 * 174.41584 * 15 2 1 17 17 C 1.54909 * 111.00734 * 298.30512 * 15 2 1 18 18 N 1.47415 * 104.83554 * 155.08011 * 17 15 2 19 19 C 1.36941 * 125.64935 * 155.90327 * 18 17 15 20 20 H 1.08004 * 119.99850 * 5.35414 * 19 18 17 21 21 C 1.38815 * 120.00109 * 185.35080 * 19 18 17 22 22 N 1.31615 * 119.99722 * 5.97606 * 21 19 18 23 23 Si 1.86797 * 119.99971 * 185.97196 * 21 19 18 24 24 H 1.48500 * 109.47339 * 94.99675 * 23 21 19 25 25 H 1.48506 * 109.47215 * 214.99953 * 23 21 19 26 26 H 1.48508 * 109.47189 * 334.99318 * 23 21 19 27 27 C 1.47019 * 108.70456 * 335.87006 * 18 17 15 28 28 C 1.54372 * 107.28843 * 1.09099 * 27 18 17 29 29 H 1.09000 * 110.70255 * 263.79809 * 28 27 18 30 30 O 1.42904 * 110.75494 * 140.50631 * 28 27 18 31 31 H 1.08992 * 109.47091 * 84.96196 * 1 2 3 32 32 H 1.09005 * 109.46906 * 204.96248 * 1 2 3 33 33 H 1.09004 * 109.47335 * 324.95839 * 1 2 3 34 34 H 1.09002 * 109.46140 * 298.70584 * 7 5 3 35 35 H 1.09006 * 109.45839 * 58.67452 * 7 5 3 36 36 H 1.09004 * 109.49746 * 181.32099 * 8 7 5 37 37 H 1.09003 * 109.49693 * 301.41022 * 8 7 5 38 38 H 1.09000 * 109.58976 * 65.15430 * 9 8 7 39 39 H 1.08999 * 109.59075 * 185.43864 * 9 8 7 40 40 H 0.96996 * 120.00266 * 5.11240 * 12 11 10 41 41 H 0.97000 * 119.99738 * 185.11523 * 12 11 10 42 42 H 1.08999 * 109.58253 * 186.78889 * 14 10 9 43 43 H 1.08991 * 109.58419 * 66.50450 * 14 10 9 44 44 H 1.09011 * 110.36066 * 273.92190 * 17 15 2 45 45 H 1.08998 * 110.36384 * 36.23405 * 17 15 2 46 46 H 0.97006 * 119.99585 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.88378 * 120.47585 * 27 18 17 48 48 H 1.09004 * 109.88467 * 241.64178 * 27 18 17 49 49 H 0.96703 * 113.99718 * 66.48436 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5353 2.2159 0.0826 5 6 3.6423 1.1693 -0.1028 6 1 4.0468 0.3297 0.4627 7 6 4.1914 2.4802 0.4649 8 6 5.7200 2.4695 0.3912 9 6 6.1557 2.3567 -1.0730 10 7 5.5143 1.1773 -1.6708 11 6 6.2510 0.2362 -2.2939 12 7 7.5962 0.3193 -2.2865 13 8 5.7020 -0.6877 -2.8625 14 6 4.0546 1.0418 -1.5726 15 6 2.1976 -1.2686 0.0006 16 1 3.2696 -1.0984 -0.0986 17 6 1.8814 -2.0919 1.2742 18 7 2.1401 -3.4920 0.8924 19 6 2.4502 -4.5100 1.7543 20 1 2.4378 -4.3376 2.8204 21 6 2.7805 -5.7635 1.2577 22 7 2.9107 -5.9441 -0.0394 23 14 3.0403 -7.1940 2.4306 24 1 1.7785 -7.9671 2.5557 25 1 4.1119 -8.0773 1.9045 26 1 3.4371 -6.6749 3.7642 27 6 2.0093 -3.6148 -0.5668 28 6 1.6784 -2.2111 -1.1174 29 1 0.6031 -2.0937 -1.2522 30 8 2.3723 -1.9714 -2.3434 31 1 -0.3633 0.0902 -1.0236 32 1 -0.3633 -0.9317 0.4337 33 1 -0.3634 0.8414 0.5901 34 1 3.8056 3.3176 -0.1165 35 1 3.8788 2.5850 1.5040 36 1 6.1112 3.3935 0.8171 37 1 6.1053 1.6181 0.9522 38 1 5.8491 3.2510 -1.6155 39 1 7.2394 2.2516 -1.1247 40 1 8.0365 1.0133 -1.7715 41 1 8.1240 -0.3151 -2.7963 42 1 3.7518 0.0665 -1.9537 43 1 3.5747 1.8273 -2.1562 44 1 2.5385 -1.7937 2.0913 45 1 0.8374 -1.9631 1.5596 46 1 3.1419 -6.8200 -0.3864 47 1 2.9474 -3.9684 -0.9947 48 1 1.2040 -4.3080 -0.8098 49 1 2.0850 -2.5352 -3.0747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047450109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = -68.924441 kcal Electronic energy + Delta-G solvation = -32424.732519 eV Core-core repulsion = 28195.241129 eV Total energy + Delta-G solvation = -4229.491390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.74316 -39.69035 -38.09108 -37.03335 -35.10097 -34.63834 -33.98015 -32.42954 -31.77430 -31.43368 -28.50463 -27.52195 -26.80635 -25.44857 -24.47787 -23.70618 -21.69008 -20.78443 -20.39640 -19.70337 -18.67590 -18.35620 -17.45217 -17.09242 -16.84013 -16.19793 -15.83406 -15.40201 -15.24041 -14.80921 -14.73459 -14.40106 -14.23276 -14.13720 -13.94151 -13.42473 -13.15639 -13.09441 -12.92668 -12.68528 -12.46944 -12.37357 -12.08756 -11.88772 -11.57016 -11.43134 -11.27076 -11.21216 -11.01547 -10.86443 -10.78963 -10.63842 -10.17460 -10.09987 -10.02054 -9.87184 -9.65343 -9.55771 -9.22622 -8.74376 -8.66397 -8.37256 -6.92636 -5.76065 -3.14535 2.53742 2.87727 3.15687 3.28561 3.37022 3.42215 3.44495 4.02185 4.39060 4.46850 4.61621 4.67957 4.71380 4.80086 4.90164 5.13432 5.16437 5.21892 5.39408 5.40906 5.49882 5.52914 5.58863 5.62922 5.67450 5.72643 5.75110 5.83894 5.85436 5.94509 5.97907 6.10080 6.12272 6.19941 6.35376 6.41219 6.57416 6.72258 6.72957 6.92075 7.26938 7.53603 7.56797 7.74191 7.84495 8.16870 8.25391 8.29767 8.67151 9.11852 9.72730 10.35535 11.32909 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.004078 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.888243 B = 6864.553026 C = 7968.962178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.596 5.596 3 C 0.527 3.473 4 O -0.548 6.548 5 C -0.126 4.126 6 H 0.099 0.901 7 C -0.099 4.099 8 C -0.136 4.136 9 C 0.110 3.890 10 N -0.627 5.627 11 C 0.705 3.295 12 N -0.871 5.871 13 O -0.570 6.570 14 C 0.139 3.861 15 C 0.123 3.877 16 H 0.110 0.890 17 C 0.129 3.871 18 N -0.597 5.597 19 C -0.234 4.234 20 H 0.080 0.920 21 C -0.004 4.004 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.147 3.853 28 C 0.067 3.933 29 H 0.056 0.944 30 O -0.554 6.554 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.393 0.607 41 H 0.413 0.587 42 H 0.119 0.881 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.028 0.972 46 H 0.254 0.746 47 H 0.077 0.923 48 H 0.034 0.966 49 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.596 17.282 -2.749 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.327 5.327 3 C 0.315 3.685 4 O -0.426 6.426 5 C -0.148 4.148 6 H 0.117 0.883 7 C -0.137 4.137 8 C -0.175 4.175 9 C -0.013 4.013 10 N -0.365 5.365 11 C 0.404 3.596 12 N -0.442 5.442 13 O -0.446 6.446 14 C 0.015 3.985 15 C 0.019 3.981 16 H 0.128 0.872 17 C 0.002 3.998 18 N -0.325 5.325 19 C -0.362 4.362 20 H 0.098 0.902 21 C -0.201 4.201 22 N -0.563 5.563 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.021 3.979 28 C 0.007 3.993 29 H 0.074 0.926 30 O -0.358 6.358 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.223 0.777 41 H 0.245 0.755 42 H 0.137 0.863 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.064 0.936 47 H 0.095 0.905 48 H 0.052 0.948 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.111 17.484 -2.711 18.416 hybrid contribution 0.288 -1.291 0.400 1.382 sum 5.399 16.193 -2.311 17.225 Atomic orbital electron populations 1.21628 0.79515 1.03121 1.01712 1.47815 1.06940 1.05979 1.72006 1.20307 0.89395 0.83130 0.75709 1.90647 1.70353 1.31132 1.50465 1.21760 0.92607 1.01083 0.99380 0.88325 1.21344 0.94252 0.96255 1.01879 1.21963 0.96494 1.02904 0.96100 1.21661 0.97090 0.88563 0.94002 1.47183 1.07189 1.22420 1.59748 1.15894 0.81863 0.82101 0.79727 1.43161 1.05639 1.38658 1.56707 1.91069 1.70724 1.34055 1.48731 1.21391 0.78347 1.05481 0.93235 1.22649 0.97254 0.81915 0.96293 0.87239 1.21827 0.98341 0.85868 0.93770 1.44229 1.82615 1.02733 1.02883 1.19047 1.40287 0.88311 0.88587 0.90227 1.24837 1.01132 0.97956 0.96157 1.69938 1.53460 1.22388 1.10514 0.86087 0.77486 0.82348 0.79731 1.21570 1.21648 1.20546 1.21931 1.01811 0.89874 0.84244 1.23461 0.94200 0.97149 0.84504 0.92627 1.86489 1.65247 1.63909 1.20205 0.92861 0.90495 0.90892 0.90582 0.91167 0.90246 0.91138 0.91154 0.90486 0.77735 0.75526 0.86337 0.91476 0.93464 0.95469 0.93584 0.90513 0.94752 0.77760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 8.97 59.85 0.54 1.70 16 2 N -0.60 -9.48 2.91 -171.48 -0.50 -9.98 16 3 C 0.53 8.34 6.81 -10.99 -0.07 8.26 16 4 O -0.55 -9.68 15.73 5.56 0.09 -9.59 16 5 C -0.13 -1.72 1.81 -91.65 -0.17 -1.89 16 6 H 0.10 1.44 6.37 -51.93 -0.33 1.11 16 7 C -0.10 -1.09 4.64 -26.69 -0.12 -1.21 16 8 C -0.14 -1.11 6.08 -26.62 -0.16 -1.27 16 9 C 0.11 0.89 6.42 -3.70 -0.02 0.87 16 10 N -0.63 -7.71 2.98 -178.48 -0.53 -8.24 16 11 C 0.70 10.14 8.57 -86.92 -0.75 9.39 16 12 N -0.87 -8.24 8.77 27.64 0.24 -8.00 16 13 O -0.57 -11.23 16.62 5.29 0.09 -11.14 16 14 C 0.14 1.98 5.55 -3.71 -0.02 1.96 16 15 C 0.12 2.21 2.76 -65.78 -0.18 2.03 16 16 H 0.11 2.09 5.07 -51.93 -0.26 1.83 16 17 C 0.13 2.60 6.80 -2.53 -0.02 2.59 16 18 N -0.60 -14.82 3.39 -170.04 -0.58 -15.40 16 19 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16 20 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 21 C 0.00 -0.11 5.46 -17.43 -0.10 -0.20 16 22 N -0.92 -26.54 10.42 55.49 0.58 -25.96 16 23 Si 0.91 21.79 29.56 -169.99 -5.02 16.76 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 C 0.15 3.48 5.21 -3.04 -0.02 3.46 16 28 C 0.07 1.27 3.87 -24.87 -0.10 1.17 16 29 H 0.06 0.97 6.89 -51.93 -0.36 0.61 16 30 O -0.55 -10.11 12.44 -35.23 -0.44 -10.55 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.05 6.42 -51.93 -0.33 0.72 16 33 H 0.07 1.00 7.52 -51.93 -0.39 0.61 16 34 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.42 5.59 -51.93 -0.29 0.13 16 40 H 0.39 2.40 6.33 -40.82 -0.26 2.15 16 41 H 0.41 3.55 8.93 -40.82 -0.36 3.18 16 42 H 0.12 2.09 5.46 -51.93 -0.28 1.81 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 45 H 0.03 0.53 6.54 -51.93 -0.34 0.19 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.08 2.10 6.85 -51.93 -0.36 1.74 16 48 H 0.03 0.88 7.93 -51.93 -0.41 0.46 16 49 H 0.38 5.58 9.12 45.56 0.42 5.99 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -35.55 377.42 -8.21 -43.76 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.48 Total: 12.32 kcal Atomic # 6 Polarization: 21.67 SS G_CDS: -1.34 Total: 20.33 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -0.79 Total: -67.58 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.26 Total: -31.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.55 -8.21 -43.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047450109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.166 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds