Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50705 * 120.00076 * 2 1 4 4 C 1.33116 * 120.00065 * 179.97438 * 2 1 3 5 5 F 1.35100 * 120.00382 * 180.02562 * 4 2 1 6 6 C 1.47297 * 119.99878 * 0.02562 * 4 2 1 7 7 O 1.21608 * 120.00012 * 359.97438 * 6 4 2 8 8 N 1.34779 * 120.00244 * 180.02562 * 6 4 2 9 9 C 1.46497 * 120.00253 * 180.02562 * 8 6 4 10 10 H 1.08995 * 109.50468 * 34.92599 * 9 8 6 11 11 C 1.53198 * 109.49561 * 274.82220 * 9 8 6 12 12 N 1.46934 * 108.80612 * 185.38678 * 11 9 8 13 13 C 1.36940 * 120.63767 * 233.63315 * 12 11 9 14 14 H 1.07993 * 120.00261 * 27.62870 * 13 12 11 15 15 C 1.38812 * 119.99575 * 207.63302 * 13 12 11 16 16 N 1.31619 * 120.00207 * 17.34451 * 15 13 12 17 17 Si 1.86799 * 119.99820 * 197.34301 * 15 13 12 18 18 H 1.48500 * 109.47390 * 89.99809 * 17 15 13 19 19 H 1.48504 * 109.47054 * 210.00110 * 17 15 13 20 20 H 1.48506 * 109.47019 * 330.00109 * 17 15 13 21 21 C 1.46942 * 118.72206 * 53.63243 * 12 11 9 22 22 C 1.53089 * 108.76695 * 306.50472 * 21 12 11 23 23 C 1.53067 * 109.53927 * 174.68946 * 22 21 12 24 24 C 1.53107 * 109.16634 * 176.73059 * 23 22 21 25 25 O 1.42901 * 109.41142 * 302.52614 * 24 23 22 26 26 C 1.42912 * 114.12775 * 61.17933 * 25 24 23 27 27 C 1.53091 * 109.48093 * 294.41769 * 22 21 12 28 28 C 1.52947 * 109.48277 * 54.51699 * 22 21 12 29 29 H 1.09003 * 109.47326 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47480 * 240.00097 * 1 2 3 31 31 H 1.09007 * 109.46839 * 120.00126 * 1 2 3 32 32 H 1.09006 * 109.46752 * 89.99721 * 3 2 1 33 33 H 1.09000 * 109.46894 * 209.99853 * 3 2 1 34 34 H 1.08999 * 109.47018 * 329.99689 * 3 2 1 35 35 H 0.97009 * 119.99609 * 0.02562 * 8 6 4 36 36 H 1.09000 * 109.58609 * 305.18367 * 11 9 8 37 37 H 1.09003 * 109.57982 * 65.59491 * 11 9 8 38 38 H 0.97007 * 119.99900 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.59195 * 186.72073 * 21 12 11 40 40 H 1.09003 * 109.70814 * 66.35549 * 21 12 11 41 41 H 1.08998 * 109.52433 * 296.64422 * 23 22 21 42 42 H 1.09006 * 109.52161 * 56.82364 * 23 22 21 43 43 H 1.09000 * 109.48435 * 182.55055 * 24 23 22 44 44 H 1.08994 * 109.49212 * 62.51429 * 24 23 22 45 45 H 1.09009 * 109.48345 * 178.82923 * 26 25 24 46 46 H 1.08995 * 109.48744 * 58.78139 * 26 25 24 47 47 H 1.09002 * 109.51888 * 303.11226 * 27 22 21 48 48 H 1.08996 * 109.53056 * 63.24918 * 27 22 21 49 49 H 1.09004 * 109.46074 * 178.73304 * 28 22 21 50 50 H 1.09000 * 109.45969 * 58.77562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1528 0.0005 5 9 3.5236 -1.1529 0.0010 6 6 1.4361 -2.4284 0.0005 7 8 0.2200 -2.4284 0.0005 8 7 2.1099 -3.5957 0.0016 9 6 1.3774 -4.8644 0.0010 10 1 0.4666 -4.7585 -0.5883 11 6 1.0150 -5.2461 1.4397 12 7 0.3971 -6.5792 1.4347 13 6 -0.8258 -6.7838 2.0161 14 1 -1.5357 -5.9725 2.0803 15 6 -1.1528 -8.0340 2.5230 16 7 -0.2053 -8.9160 2.7610 17 14 -2.9375 -8.4645 2.8674 18 1 -3.5429 -9.0725 1.6552 19 1 -3.0053 -9.4313 3.9926 20 1 -3.6833 -7.2320 3.2281 21 6 1.1165 -7.6886 0.7937 22 6 1.4802 -7.2792 -0.6358 23 6 2.3445 -8.3682 -1.2761 24 6 2.6350 -7.9890 -2.7307 25 8 1.4019 -7.8131 -3.4310 26 6 0.5748 -6.7730 -2.9053 27 6 0.2007 -7.1035 -1.4578 28 6 2.2551 -5.9608 -0.6074 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3633 -0.5139 -0.8900 32 1 2.4421 1.6198 1.0277 33 1 3.2129 1.1747 -0.5138 34 1 1.6715 2.0647 -0.5139 35 1 3.0800 -3.5957 0.0027 36 1 1.9170 -5.2639 2.0513 37 1 0.3111 -4.5188 1.8443 38 1 -0.4338 -9.7896 3.1156 39 1 0.4790 -8.5723 0.7697 40 1 2.0257 -7.9090 1.3532 41 1 3.2827 -8.4575 -0.7285 42 1 1.8128 -9.3194 -1.2468 43 1 3.2123 -8.7827 -3.2050 44 1 3.2041 -7.0598 -2.7576 45 1 -0.3316 -6.6908 -3.5053 46 1 1.1168 -5.8278 -2.9338 47 1 -0.3779 -8.0270 -1.4329 48 1 -0.3925 -6.2906 -1.0392 49 1 2.5333 -5.6812 -1.6236 50 1 3.1553 -6.0817 -0.0049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099577430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -98.011890 kcal Electronic energy + Delta-G solvation = -32039.708565 eV Core-core repulsion = 27789.035886 eV Total energy + Delta-G solvation = -4250.672678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.95641 -40.30314 -39.37197 -37.08456 -35.49489 -34.27719 -33.54075 -31.40884 -30.71302 -29.60534 -28.10974 -27.30722 -27.05727 -25.46014 -23.29308 -23.05092 -22.65294 -21.05203 -20.06160 -19.38960 -18.28812 -17.44072 -16.75976 -16.25317 -16.08127 -15.82156 -15.68450 -15.16095 -14.78109 -14.67267 -14.46516 -14.28008 -13.86586 -13.77427 -13.66836 -13.47961 -13.20475 -13.16477 -12.83484 -12.53700 -12.45368 -12.42791 -12.36634 -11.89731 -11.80772 -11.43249 -11.38561 -11.03680 -10.90637 -10.84220 -10.76079 -10.44465 -10.20309 -10.03427 -9.94632 -9.79964 -9.65436 -9.44773 -9.12812 -8.92312 -8.79216 -8.42240 -6.71150 -5.81717 -3.24000 1.06919 3.09429 3.15657 3.38289 3.45553 3.47039 4.16880 4.21281 4.47445 4.54219 4.69845 4.97433 5.04840 5.16776 5.23781 5.25153 5.33825 5.41206 5.43385 5.49780 5.51737 5.55650 5.61147 5.68703 5.74659 5.75205 5.82700 5.85692 5.91020 5.99093 6.10373 6.12650 6.14856 6.20112 6.36153 6.37930 6.49421 6.56451 6.64721 6.72832 6.80902 6.91152 6.94316 7.26913 7.49123 7.60005 7.61720 7.80260 8.22199 8.41847 9.18207 9.80242 10.35638 11.26831 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009758 B = 0.004162 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.747200 B = 6725.770609 C = 8535.784636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.077 4.077 3 C -0.124 4.124 4 C -0.025 4.025 5 F -0.141 7.141 6 C 0.543 3.457 7 O -0.516 6.516 8 N -0.714 5.714 9 C 0.124 3.876 10 H 0.093 0.907 11 C 0.141 3.859 12 N -0.583 5.583 13 C -0.251 4.251 14 H 0.067 0.933 15 C 0.006 3.994 16 N -0.902 5.902 17 Si 0.901 3.099 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.278 1.278 21 C 0.183 3.817 22 C -0.077 4.077 23 C -0.140 4.140 24 C 0.062 3.938 25 O -0.388 6.388 26 C 0.059 3.941 27 C -0.134 4.134 28 C -0.111 4.111 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.398 0.602 36 H 0.018 0.982 37 H 0.058 0.942 38 H 0.254 0.746 39 H 0.092 0.908 40 H 0.019 0.981 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.055 0.945 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.932 12.963 -9.155 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.080 4.080 3 C -0.180 4.180 4 C -0.047 4.047 5 F -0.120 7.120 6 C 0.329 3.671 7 O -0.394 6.394 8 N -0.364 5.364 9 C 0.019 3.981 10 H 0.111 0.889 11 C 0.013 3.987 12 N -0.305 5.305 13 C -0.380 4.380 14 H 0.085 0.915 15 C -0.193 4.193 16 N -0.546 5.546 17 Si 0.731 3.269 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.057 3.943 22 C -0.079 4.079 23 C -0.178 4.178 24 C -0.015 4.015 25 O -0.307 6.307 26 C -0.018 4.018 27 C -0.171 4.171 28 C -0.149 4.149 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.037 0.963 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.073 0.927 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.010 12.645 -9.204 17.139 hybrid contribution 0.147 -0.145 0.570 0.607 sum 7.157 12.500 -8.634 16.793 Atomic orbital electron populations 1.20924 0.88721 1.01633 1.04904 1.22720 0.98140 0.93555 0.93634 1.20920 1.00168 0.93761 1.03198 1.19550 0.76951 0.94805 1.13426 1.91438 1.28879 1.97152 1.94538 1.18165 0.87575 0.83453 0.77955 1.90855 1.12266 1.86592 1.49652 1.46052 1.10355 1.06008 1.73945 1.21877 0.95191 0.80330 1.00660 0.88942 1.21199 0.96519 0.89233 0.91711 1.43944 1.19805 1.02955 1.63790 1.19190 0.90135 0.96735 1.31968 0.91520 1.24994 0.97465 0.98339 0.98492 1.70030 1.30488 1.07052 1.47061 0.86310 0.85042 0.78073 0.77516 1.21348 1.21803 1.20381 1.20855 0.95798 0.92281 0.85404 1.21169 0.94058 0.92906 0.99816 1.22126 1.00526 0.99765 0.95415 1.22566 0.86111 1.00168 0.92647 1.87861 1.31138 1.56088 1.55639 1.22676 0.94061 0.89591 0.95433 1.22120 0.97937 1.03602 0.93484 1.21826 0.98350 0.95073 0.99627 0.92344 0.89380 0.89555 0.90062 0.90961 0.90533 0.76807 0.96454 0.92296 0.93626 0.88976 0.96256 0.91287 0.90849 0.89692 0.93661 0.89664 0.93794 0.91280 0.89761 0.92671 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 8.33 36.01 0.30 -0.86 16 2 C -0.08 -0.84 6.12 -101.13 -0.62 -1.46 16 3 C -0.12 -0.97 9.78 36.01 0.35 -0.62 16 4 C -0.03 -0.32 7.37 -37.68 -0.28 -0.60 16 5 F -0.14 -1.71 15.81 2.25 0.04 -1.67 16 6 C 0.54 8.24 7.71 -12.58 -0.10 8.14 16 7 O -0.52 -9.15 12.74 5.27 0.07 -9.08 16 8 N -0.71 -10.38 5.08 -54.80 -0.28 -10.66 16 9 C 0.12 2.12 2.27 -67.80 -0.15 1.97 16 10 H 0.09 1.76 5.71 -51.93 -0.30 1.46 16 11 C 0.14 2.95 6.09 -3.70 -0.02 2.93 16 12 N -0.58 -13.99 2.50 -172.36 -0.43 -14.42 16 13 C -0.25 -6.75 9.59 -15.06 -0.14 -6.89 16 14 H 0.07 1.82 7.89 -52.49 -0.41 1.40 16 15 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 16 N -0.90 -25.52 11.19 55.49 0.62 -24.90 16 17 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.18 4.08 3.99 -3.76 -0.01 4.06 16 22 C -0.08 -1.35 0.51 -154.41 -0.08 -1.42 16 23 C -0.14 -2.14 4.92 -26.64 -0.13 -2.27 16 24 C 0.06 0.84 6.57 37.21 0.24 1.09 16 25 O -0.39 -6.14 10.76 -35.23 -0.38 -6.52 16 26 C 0.06 0.90 6.57 37.22 0.24 1.14 16 27 C -0.13 -2.38 4.48 -26.62 -0.12 -2.50 16 28 C -0.11 -1.72 3.63 -26.73 -0.10 -1.82 16 29 H 0.06 0.49 7.94 -51.93 -0.41 0.07 16 30 H 0.09 1.12 7.22 -51.93 -0.38 0.75 16 31 H 0.09 1.05 7.22 -51.93 -0.38 0.67 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.56 7.55 -51.93 -0.39 0.17 16 34 H 0.08 0.47 8.05 -51.93 -0.42 0.05 16 35 H 0.40 4.90 8.15 -40.82 -0.33 4.57 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 38 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.57 6.59 -51.93 -0.34 0.23 16 45 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 46 H 0.04 0.64 6.64 -51.93 -0.34 0.29 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.08 1.64 5.92 -51.93 -0.31 1.34 16 49 H 0.05 0.78 5.03 -51.93 -0.26 0.51 16 50 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -29.63 381.29 -8.29 -37.92 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.94 Total: 6.01 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -0.70 Total: 0.97 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.09 Total: -49.98 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.31 Total: -15.61 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.63 -8.29 -37.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099577430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.095 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds