Wall clock time and date at job start Sat Apr 11 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50705 * 120.00076 * 2 1 4 4 C 1.33116 * 120.00065 * 179.97438 * 2 1 3 5 5 F 1.35100 * 120.00382 * 180.02562 * 4 2 1 6 6 C 1.47297 * 119.99878 * 0.02562 * 4 2 1 7 7 O 1.21608 * 120.00012 * 359.97438 * 6 4 2 8 8 N 1.34779 * 120.00244 * 180.02562 * 6 4 2 9 9 C 1.46497 * 120.00253 * 180.02562 * 8 6 4 10 10 H 1.08995 * 109.50468 * 34.92599 * 9 8 6 11 11 C 1.53198 * 109.49561 * 274.82220 * 9 8 6 12 12 N 1.46934 * 108.80612 * 185.38678 * 11 9 8 13 13 C 1.36940 * 120.63767 * 233.63315 * 12 11 9 14 14 H 1.07993 * 120.00261 * 27.62870 * 13 12 11 15 15 C 1.38812 * 119.99575 * 207.63302 * 13 12 11 16 16 N 1.31619 * 120.00207 * 17.34451 * 15 13 12 17 17 Si 1.86799 * 119.99820 * 197.34301 * 15 13 12 18 18 H 1.48500 * 109.47390 * 89.99809 * 17 15 13 19 19 H 1.48504 * 109.47054 * 210.00110 * 17 15 13 20 20 H 1.48506 * 109.47019 * 330.00109 * 17 15 13 21 21 C 1.46942 * 118.72206 * 53.63243 * 12 11 9 22 22 C 1.53089 * 108.76695 * 306.50472 * 21 12 11 23 23 C 1.53067 * 109.53927 * 174.68946 * 22 21 12 24 24 C 1.53107 * 109.16634 * 176.73059 * 23 22 21 25 25 O 1.42901 * 109.41142 * 302.52614 * 24 23 22 26 26 C 1.42912 * 114.12775 * 61.17933 * 25 24 23 27 27 C 1.53091 * 109.48093 * 294.41769 * 22 21 12 28 28 C 1.52947 * 109.48277 * 54.51699 * 22 21 12 29 29 H 1.09003 * 109.47326 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47480 * 240.00097 * 1 2 3 31 31 H 1.09007 * 109.46839 * 120.00126 * 1 2 3 32 32 H 1.09006 * 109.46752 * 89.99721 * 3 2 1 33 33 H 1.09000 * 109.46894 * 209.99853 * 3 2 1 34 34 H 1.08999 * 109.47018 * 329.99689 * 3 2 1 35 35 H 0.97009 * 119.99609 * 0.02562 * 8 6 4 36 36 H 1.09000 * 109.58609 * 305.18367 * 11 9 8 37 37 H 1.09003 * 109.57982 * 65.59491 * 11 9 8 38 38 H 0.97007 * 119.99900 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.59195 * 186.72073 * 21 12 11 40 40 H 1.09003 * 109.70814 * 66.35549 * 21 12 11 41 41 H 1.08998 * 109.52433 * 296.64422 * 23 22 21 42 42 H 1.09006 * 109.52161 * 56.82364 * 23 22 21 43 43 H 1.09000 * 109.48435 * 182.55055 * 24 23 22 44 44 H 1.08994 * 109.49212 * 62.51429 * 24 23 22 45 45 H 1.09009 * 109.48345 * 178.82923 * 26 25 24 46 46 H 1.08995 * 109.48744 * 58.78139 * 26 25 24 47 47 H 1.09002 * 109.51888 * 303.11226 * 27 22 21 48 48 H 1.08996 * 109.53056 * 63.24918 * 27 22 21 49 49 H 1.09004 * 109.46074 * 178.73304 * 28 22 21 50 50 H 1.09000 * 109.45969 * 58.77562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1528 0.0005 5 9 3.5236 -1.1529 0.0010 6 6 1.4361 -2.4284 0.0005 7 8 0.2200 -2.4284 0.0005 8 7 2.1099 -3.5957 0.0016 9 6 1.3774 -4.8644 0.0010 10 1 0.4666 -4.7585 -0.5883 11 6 1.0150 -5.2461 1.4397 12 7 0.3971 -6.5792 1.4347 13 6 -0.8258 -6.7838 2.0161 14 1 -1.5357 -5.9725 2.0803 15 6 -1.1528 -8.0340 2.5230 16 7 -0.2053 -8.9160 2.7610 17 14 -2.9375 -8.4645 2.8674 18 1 -3.5429 -9.0725 1.6552 19 1 -3.0053 -9.4313 3.9926 20 1 -3.6833 -7.2320 3.2281 21 6 1.1165 -7.6886 0.7937 22 6 1.4802 -7.2792 -0.6358 23 6 2.3445 -8.3682 -1.2761 24 6 2.6350 -7.9890 -2.7307 25 8 1.4019 -7.8131 -3.4310 26 6 0.5748 -6.7730 -2.9053 27 6 0.2007 -7.1035 -1.4578 28 6 2.2551 -5.9608 -0.6074 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3633 -0.5139 -0.8900 32 1 2.4421 1.6198 1.0277 33 1 3.2129 1.1747 -0.5138 34 1 1.6715 2.0647 -0.5139 35 1 3.0800 -3.5957 0.0027 36 1 1.9170 -5.2639 2.0513 37 1 0.3111 -4.5188 1.8443 38 1 -0.4338 -9.7896 3.1156 39 1 0.4790 -8.5723 0.7697 40 1 2.0257 -7.9090 1.3532 41 1 3.2827 -8.4575 -0.7285 42 1 1.8128 -9.3194 -1.2468 43 1 3.2123 -8.7827 -3.2050 44 1 3.2041 -7.0598 -2.7576 45 1 -0.3316 -6.6908 -3.5053 46 1 1.1168 -5.8278 -2.9338 47 1 -0.3779 -8.0270 -1.4329 48 1 -0.3925 -6.2906 -1.0392 49 1 2.5333 -5.6812 -1.6236 50 1 3.1553 -6.0817 -0.0049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099577430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:14 Heat of formation + Delta-G solvation = -116.205446 kcal Electronic energy + Delta-G solvation = -32040.497496 eV Core-core repulsion = 27789.035886 eV Total energy + Delta-G solvation = -4251.461610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.87589 -41.67706 -40.61172 -38.49487 -36.60118 -35.66811 -35.09892 -33.18937 -32.02676 -31.10613 -28.91752 -28.68369 -28.19764 -27.32520 -24.59844 -24.57991 -23.96572 -22.52935 -21.56544 -20.47906 -19.46011 -18.84897 -18.53054 -17.62169 -17.10181 -16.94140 -16.86546 -16.52960 -16.30940 -16.10970 -15.76062 -15.59453 -15.40451 -15.11969 -15.09202 -14.83607 -14.42374 -14.27089 -14.03130 -13.90678 -13.58363 -13.33350 -13.28692 -13.19298 -13.08329 -13.00544 -12.78112 -12.70775 -12.56007 -12.35204 -12.18329 -12.11850 -11.92467 -11.85259 -11.62244 -11.16328 -11.01549 -10.73542 -10.61921 -10.28980 -10.26717 -9.80315 -8.69546 -7.91179 -5.35883 0.09779 1.42516 1.44527 1.52554 1.91695 2.00333 2.48294 3.02226 3.16467 3.22917 3.57795 3.62862 3.71964 3.87493 3.90678 3.93038 4.12834 4.18048 4.21892 4.25195 4.33117 4.37446 4.47589 4.54119 4.64085 4.73348 4.74441 4.76578 4.83661 4.85219 4.88401 4.92559 4.96399 4.99028 5.04210 5.08466 5.11532 5.23226 5.25597 5.30301 5.41928 5.48189 5.51885 5.57434 5.63010 5.73397 6.31600 6.35203 6.45251 7.05765 7.12229 7.80660 8.31054 9.14238 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009758 B = 0.004162 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.747200 B = 6725.770609 C = 8535.784636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.054 4.054 3 C -0.124 4.124 4 C -0.047 4.047 5 F -0.137 7.137 6 C 0.538 3.462 7 O -0.549 6.549 8 N -0.706 5.706 9 C 0.143 3.857 10 H 0.074 0.926 11 C 0.144 3.856 12 N -0.598 5.598 13 C -0.260 4.260 14 H 0.055 0.945 15 C -0.039 4.039 16 N -0.928 5.928 17 Si 0.958 3.042 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.274 1.274 21 C 0.193 3.807 22 C -0.071 4.071 23 C -0.137 4.137 24 C 0.063 3.937 25 O -0.399 6.399 26 C 0.068 3.932 27 C -0.128 4.128 28 C -0.101 4.101 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.412 0.588 36 H 0.016 0.984 37 H 0.034 0.966 38 H 0.251 0.749 39 H 0.054 0.946 40 H -0.001 1.001 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.059 0.941 47 H 0.042 0.958 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 15.026 -10.968 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.058 4.058 3 C -0.180 4.180 4 C -0.070 4.070 5 F -0.116 7.116 6 C 0.326 3.674 7 O -0.429 6.429 8 N -0.357 5.357 9 C 0.037 3.963 10 H 0.092 0.908 11 C 0.017 3.983 12 N -0.321 5.321 13 C -0.391 4.391 14 H 0.073 0.927 15 C -0.235 4.235 16 N -0.573 5.573 17 Si 0.787 3.213 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.199 1.199 21 C 0.068 3.932 22 C -0.073 4.073 23 C -0.175 4.175 24 C -0.013 4.013 25 O -0.318 6.318 26 C -0.008 4.008 27 C -0.166 4.166 28 C -0.138 4.138 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.248 0.752 36 H 0.033 0.967 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.017 0.983 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.638 14.736 -11.034 20.335 hybrid contribution -0.376 -0.699 1.209 1.447 sum 8.262 14.037 -9.824 19.021 Atomic orbital electron populations 1.20909 0.89008 1.03136 1.03195 1.23114 0.98140 0.94483 0.90013 1.21052 1.00261 0.92263 1.04411 1.19204 0.77248 0.93901 1.16602 1.91445 1.28241 1.97047 1.94859 1.18625 0.87410 0.84349 0.76990 1.90847 1.13780 1.87181 1.51101 1.45865 1.10927 1.05012 1.73906 1.21368 0.95436 0.82089 0.97390 0.90762 1.21212 0.95384 0.87257 0.94425 1.44104 1.19431 1.04403 1.64145 1.19340 0.91306 0.96626 1.31781 0.92700 1.25621 1.00762 0.98273 0.98879 1.70159 1.31976 1.07102 1.48102 0.85407 0.81054 0.77715 0.77160 1.21122 1.21785 1.19852 1.20640 0.93679 0.90698 0.88195 1.20986 0.94881 0.94963 0.96451 1.22106 1.00325 0.97887 0.97167 1.22737 0.85621 1.02121 0.90863 1.87863 1.31984 1.56217 1.55785 1.22602 0.94938 0.90055 0.93228 1.22011 0.97480 1.01387 0.95759 1.21752 0.97814 0.92914 1.01365 0.89157 0.91528 0.90884 0.88645 0.90501 0.88239 0.75155 0.96658 0.94743 0.94013 0.92729 0.98276 0.89779 0.92643 0.87168 0.91544 0.88550 0.92259 0.93901 0.92051 0.89711 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 8.33 71.24 0.59 -1.60 16 2 C -0.05 -1.07 6.12 -17.60 -0.11 -1.18 16 3 C -0.12 -1.50 9.78 71.24 0.70 -0.80 16 4 C -0.05 -1.13 7.37 23.50 0.17 -0.96 16 5 F -0.14 -3.02 15.81 44.97 0.71 -2.31 16 6 C 0.54 16.18 7.71 86.63 0.67 16.85 16 7 O -0.55 -19.92 12.74 -4.05 -0.05 -19.97 16 8 N -0.71 -19.95 5.08 -445.54 -2.26 -22.21 16 9 C 0.14 4.88 2.27 45.08 0.10 4.98 16 10 H 0.07 2.88 5.71 -2.39 -0.01 2.86 16 11 C 0.14 6.26 6.09 86.36 0.53 6.79 16 12 N -0.60 -30.07 2.50 -699.23 -1.75 -31.82 16 13 C -0.26 -14.68 9.59 84.03 0.81 -13.88 16 14 H 0.06 3.16 7.89 -2.91 -0.02 3.13 16 15 C -0.04 -2.22 4.91 84.86 0.42 -1.80 16 16 N -0.93 -54.67 11.19 21.65 0.24 -54.42 16 17 Si 0.96 45.96 29.59 68.60 2.03 47.99 16 18 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 21 C 0.19 9.02 3.99 86.32 0.34 9.36 16 22 C -0.07 -2.46 0.51 -52.12 -0.03 -2.49 16 23 C -0.14 -4.00 4.92 30.65 0.15 -3.85 16 24 C 0.06 1.50 6.57 72.02 0.47 1.98 16 25 O -0.40 -11.63 10.76 -148.98 -1.60 -13.23 16 26 C 0.07 1.96 6.57 72.02 0.47 2.44 16 27 C -0.13 -4.64 4.48 30.66 0.14 -4.50 16 28 C -0.10 -2.96 3.63 30.60 0.11 -2.85 16 29 H 0.09 1.26 7.94 -2.39 -0.02 1.24 16 30 H 0.07 1.70 7.22 -2.39 -0.02 1.69 16 31 H 0.07 1.74 7.22 -2.38 -0.02 1.72 16 32 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 0.92 7.55 -2.39 -0.02 0.90 16 34 H 0.10 0.80 8.05 -2.39 -0.02 0.78 16 35 H 0.41 9.37 8.15 -92.70 -0.76 8.61 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.03 1.63 7.93 -2.39 -0.02 1.61 16 38 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 39 H 0.05 2.95 6.04 -2.39 -0.01 2.94 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.07 1.35 6.59 -2.39 -0.02 1.34 16 45 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 46 H 0.06 1.55 6.64 -2.39 -0.02 1.53 16 47 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.06 2.49 5.92 -2.39 -0.01 2.47 16 49 H 0.08 2.07 5.03 -2.38 -0.01 2.06 16 50 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -68.11 381.29 3.06 -65.06 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.20 Total: 22.43 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.54 Total: 8.48 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -3.77 Total: -108.45 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.66 Total: -33.20 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.71 Total: -2.31 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -68.11 3.06 -65.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099577430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.149 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds