Wall clock time and date at job start Sat Apr 11 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.46973 * 2 1 4 4 C 1.30999 * 119.99764 * 127.61499 * 3 2 1 5 5 C 1.50693 * 120.00464 * 7.54339 * 4 3 2 6 6 C 1.52996 * 109.47218 * 126.33093 * 5 4 3 7 7 N 1.46904 * 109.47027 * 179.97438 * 6 5 4 8 8 C 1.46902 * 111.00117 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47339 * 180.02562 * 8 7 6 10 10 H 1.09006 * 110.30613 * 54.30138 * 9 8 7 11 11 C 1.54394 * 110.34306 * 292.12800 * 9 8 7 12 12 N 1.48309 * 104.53420 * 217.33113 * 11 9 8 13 13 C 1.34781 * 127.77253 * 219.51235 * 12 11 9 14 14 O 1.21285 * 119.99508 * 359.91511 * 13 12 11 15 15 C 1.50697 * 120.00454 * 179.91717 * 13 12 11 16 16 S 1.81001 * 109.47158 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99953 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99749 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00129 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00164 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00126 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46807 * 60.00053 * 21 19 17 23 23 H 1.48502 * 109.47372 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47283 * 299.99975 * 21 19 17 25 25 C 1.48142 * 104.39492 * 39.46415 * 12 11 9 26 26 C 1.54287 * 110.34552 * 176.48018 * 9 8 7 27 27 H 1.09000 * 110.33615 * 359.97438 * 26 9 8 28 28 C 1.53004 * 110.33927 * 237.84936 * 26 9 8 29 29 H 1.09003 * 109.47229 * 60.00262 * 1 2 3 30 30 H 1.08997 * 109.47260 * 300.00296 * 1 2 3 31 31 H 1.09005 * 109.46747 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47229 * 119.99738 * 2 1 3 33 33 H 1.08998 * 109.47696 * 240.00010 * 2 1 3 34 34 H 1.07997 * 119.99403 * 307.61453 * 3 2 1 35 35 H 1.08005 * 119.99310 * 187.54274 * 4 3 2 36 36 H 1.09005 * 109.46995 * 246.33532 * 5 4 3 37 37 H 1.09002 * 109.47016 * 6.33254 * 5 4 3 38 38 H 1.08997 * 109.47361 * 299.99469 * 6 5 4 39 39 H 1.09002 * 109.46995 * 60.00149 * 6 5 4 40 40 H 1.00895 * 111.00399 * 303.95945 * 7 6 5 41 41 H 1.08994 * 109.47455 * 300.00823 * 8 7 6 42 42 H 1.09008 * 109.46768 * 60.00377 * 8 7 6 43 43 H 1.08996 * 110.40865 * 336.04287 * 11 9 8 44 44 H 1.09003 * 110.40467 * 98.47771 * 11 9 8 45 45 H 1.08999 * 109.46854 * 299.99780 * 15 13 12 46 46 H 1.09003 * 109.47293 * 59.99996 * 15 13 12 47 47 H 0.97001 * 120.00055 * 180.02562 * 20 19 17 48 48 H 1.08998 * 110.41160 * 201.68376 * 25 12 11 49 49 H 1.09005 * 110.50946 * 79.30479 * 25 12 11 50 50 H 1.09002 * 109.47373 * 60.00218 * 28 26 9 51 51 H 1.09000 * 109.46615 * 179.97438 * 28 26 9 52 52 H 1.08996 * 109.46969 * 299.99648 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9035 1.8076 0.8987 5 6 3.5313 0.7969 1.8234 6 6 5.0549 0.9130 1.7470 7 7 5.6669 -0.0718 2.6490 8 6 7.1329 0.0103 2.6014 9 6 7.7330 -1.0284 3.5510 10 1 7.3438 -2.0204 3.3213 11 6 7.4238 -0.6570 5.0174 12 7 8.6489 -1.0346 5.7632 13 6 8.7308 -1.6062 6.9810 14 8 7.7195 -1.8687 7.5969 15 6 10.0789 -1.9189 7.5776 16 16 9.8569 -2.6760 9.2066 17 6 11.5410 -2.9300 9.6581 18 1 12.3313 -2.6348 8.9836 19 6 11.8520 -3.5105 10.8798 20 7 10.8889 -3.8708 11.7015 21 14 13.6374 -3.7805 11.3581 22 1 14.3439 -2.4747 11.3911 23 1 13.7003 -4.4108 12.7012 24 1 14.2876 -4.6700 10.3625 25 6 9.7613 -0.6428 4.8667 26 6 9.2726 -1.0200 3.4516 27 1 9.6012 -0.2760 2.7259 28 6 9.7879 -2.4065 3.0605 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.6740 2.1202 -0.7409 35 1 3.1717 2.8509 0.9768 36 1 3.2032 0.9865 2.8455 37 1 3.2280 -0.2065 1.5247 38 1 5.3830 0.7233 0.7251 39 1 5.3583 1.9165 2.0457 40 1 5.3284 0.0425 3.5926 41 1 7.4751 -0.1862 1.5854 42 1 7.4509 1.0076 2.9054 43 1 7.2393 0.4134 5.1076 44 1 6.5661 -1.2235 5.3802 45 1 10.6130 -2.6103 6.9258 46 1 10.6535 -0.9983 7.6796 47 1 11.1063 -4.2761 12.5556 48 1 10.6651 -1.1981 5.1172 49 1 9.9448 0.4297 4.9321 50 1 9.3709 -2.6899 2.0941 51 1 10.8757 -2.3843 2.9940 52 1 9.4844 -3.1328 3.8143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105846028.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:00 Heat of formation + Delta-G solvation = -54.714689 kcal Electronic energy + Delta-G solvation = -26416.007144 eV Core-core repulsion = 22733.425150 eV Total energy + Delta-G solvation = -3682.581995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.18077 -39.21509 -38.13999 -36.43774 -34.59605 -33.96023 -32.80539 -31.65162 -30.50008 -28.52470 -27.69024 -27.38194 -25.87231 -24.13791 -23.36286 -22.61321 -20.87447 -20.70207 -19.55905 -19.16327 -18.06123 -17.55470 -16.97563 -16.89084 -16.68717 -16.15766 -15.82801 -15.71840 -15.54901 -15.26625 -14.94202 -14.64106 -14.53199 -14.46123 -14.33975 -14.06215 -13.83051 -13.52958 -13.23405 -13.12898 -12.96944 -12.92736 -12.86885 -12.73515 -12.64725 -12.53214 -12.34038 -12.12885 -11.84020 -11.79830 -11.67636 -11.59452 -11.42883 -11.18773 -11.13553 -10.95450 -10.30357 -9.81115 -9.77560 -9.34967 -8.69539 -8.35067 -6.14485 1.22428 1.33871 1.43915 1.44122 1.54635 1.54695 2.06877 2.26746 2.98934 3.10954 3.25489 3.53151 3.61566 3.81814 3.91056 3.99613 4.18533 4.20314 4.22014 4.23560 4.26196 4.30310 4.41775 4.42766 4.44441 4.51803 4.56662 4.65037 4.66512 4.72697 4.77879 4.81272 4.83586 4.85401 4.94193 5.06696 5.09464 5.13240 5.16453 5.18596 5.25554 5.28107 5.31533 5.37579 5.40226 5.54198 5.81997 5.99534 6.11673 6.18643 6.40664 6.44114 7.05601 7.09846 8.74023 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.001645 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.463808 B =17014.378402 C =17752.942384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.160 4.160 4 C -0.165 4.165 5 C -0.099 4.099 6 C 0.071 3.929 7 N -0.704 5.704 8 C 0.078 3.922 9 C -0.085 4.085 10 H 0.079 0.921 11 C 0.106 3.894 12 N -0.622 5.622 13 C 0.550 3.450 14 O -0.570 6.570 15 C -0.118 4.118 16 S -0.151 6.151 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.094 3.906 26 C -0.090 4.090 27 H 0.118 0.882 28 C -0.143 4.143 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.341 0.659 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.272 0.728 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 12.726 -29.375 33.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.178 4.178 4 C -0.184 4.184 5 C -0.136 4.136 6 C -0.058 4.058 7 N -0.335 5.335 8 C -0.051 4.051 9 C -0.105 4.105 10 H 0.097 0.903 11 C -0.016 4.016 12 N -0.356 5.356 13 C 0.339 3.661 14 O -0.449 6.449 15 C -0.270 4.270 16 S 0.076 5.924 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.028 4.028 26 C -0.109 4.109 27 H 0.136 0.864 28 C -0.201 4.201 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.159 0.841 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.080 0.920 48 H 0.101 0.899 49 H 0.111 0.889 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.245 11.709 -28.671 32.948 hybrid contribution 1.856 0.774 0.663 2.117 sum -9.389 12.483 -28.008 32.069 Atomic orbital electron populations 1.21694 0.94792 1.01973 1.01894 1.20856 0.96423 0.94657 1.02793 1.22971 0.98330 0.97840 0.98675 1.22797 0.98649 0.99407 0.97499 1.20800 0.94399 0.99239 0.99136 1.21812 0.93607 0.92990 0.97360 1.60464 1.06516 1.53234 1.13298 1.21970 0.86899 0.96533 0.99707 1.22137 0.95474 1.00608 0.92277 0.90285 1.22541 0.87696 1.00124 0.91244 1.48955 1.10538 1.60214 1.15902 1.19730 0.90123 0.76188 0.80068 1.90685 1.38682 1.54267 1.61238 1.23283 0.97581 1.05023 1.01068 1.85594 1.12651 1.78968 1.15146 1.23157 0.91785 1.47673 1.06931 0.89919 1.26139 1.03870 0.93998 0.95020 1.70182 1.34815 1.39771 1.09972 0.84992 0.76240 0.79093 0.77593 1.18582 1.20328 1.18597 1.22836 0.89831 1.01459 0.88696 1.22120 0.93582 0.99379 0.95826 0.86383 1.21848 1.01688 0.95306 1.01234 0.92249 0.93102 0.92203 0.90882 0.91073 0.86646 0.86769 0.91698 0.90193 0.90886 0.94813 0.84149 0.89404 0.93814 0.90219 0.92084 0.87752 0.87624 0.91951 0.89865 0.88853 0.91140 0.91305 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 71.98 0.71 -0.76 16 2 C -0.11 -1.24 6.02 29.85 0.18 -1.06 16 3 C -0.16 -1.81 9.51 25.65 0.24 -1.57 16 4 C -0.16 -1.91 9.51 25.65 0.24 -1.66 16 5 C -0.10 -1.22 5.58 29.84 0.17 -1.05 16 6 C 0.07 0.84 5.67 86.30 0.49 1.33 16 7 N -0.70 -9.77 6.50 -513.89 -3.34 -13.11 16 8 C 0.08 0.92 4.86 86.30 0.42 1.34 16 9 C -0.09 -1.36 2.95 -9.89 -0.03 -1.39 16 10 H 0.08 1.53 7.71 -2.38 -0.02 1.51 16 11 C 0.11 2.40 5.82 86.50 0.50 2.91 16 12 N -0.62 -17.57 3.32 -807.53 -2.68 -20.25 16 13 C 0.55 22.02 7.93 87.66 0.70 22.72 16 14 O -0.57 -28.22 16.13 -3.05 -0.05 -28.27 16 15 C -0.12 -4.96 5.13 71.24 0.37 -4.59 16 16 S -0.15 -8.60 20.57 -56.49 -1.16 -9.77 16 17 C -0.55 -31.68 9.50 67.95 0.65 -31.04 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.84 5.49 84.86 0.47 1.30 16 20 N -0.91 -56.48 13.22 21.65 0.29 -56.20 16 21 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 25 C 0.09 1.75 6.47 86.53 0.56 2.31 16 26 C -0.09 -1.23 3.30 -9.89 -0.03 -1.26 16 27 H 0.12 0.96 7.71 -2.39 -0.02 0.94 16 28 C -0.14 -2.19 8.91 71.98 0.64 -1.55 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.90 5.30 -2.39 -0.01 0.89 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.11 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 1.10 5.28 -2.39 -0.01 1.09 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 40 H 0.34 5.00 7.99 -89.70 -0.72 4.29 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.04 0.45 8.02 -2.38 -0.02 0.44 16 43 H 0.08 1.55 7.78 -2.39 -0.02 1.53 16 44 H 0.06 1.68 7.89 -2.39 -0.02 1.66 16 45 H 0.10 3.99 7.95 -2.40 -0.02 3.98 16 46 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 47 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 48 H 0.08 1.59 7.03 -2.39 -0.02 1.58 16 49 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -76.43 427.90 1.51 -74.92 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.16 Total: 20.95 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 6.27 Total: -14.01 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -5.73 Total: -89.56 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.05 Total: -28.27 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -76.43 1.51 -74.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105846028.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.203 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds