Wall clock time and date at job start Sat Apr 11 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46730 * 2 1 4 4 C 1.53002 * 109.46797 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46797 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46875 * 179.97438 * 5 4 3 7 7 C 1.46898 * 111.00224 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.17950 * 34.55896 * 7 6 5 9 9 C 1.54072 * 109.11163 * 153.66491 * 7 6 5 10 10 C 1.53967 * 108.11080 * 175.30221 * 9 7 6 11 11 H 1.09000 * 112.99940 * 168.81992 * 10 9 7 12 12 C 1.55429 * 107.20119 * 294.21300 * 10 9 7 13 13 C 1.55422 * 100.24982 * 73.50699 * 12 10 9 14 14 H 1.09002 * 112.47695 * 162.86970 * 13 12 10 15 15 C 1.52991 * 109.32758 * 275.00448 * 7 6 5 16 16 N 1.47792 * 104.13537 * 40.82864 * 13 12 10 17 17 C 1.34776 * 125.85388 * 153.48241 * 16 13 12 18 18 O 1.21280 * 120.00179 * 359.71518 * 17 16 13 19 19 C 1.50701 * 119.99720 * 179.71574 * 17 16 13 20 20 S 1.80995 * 109.47163 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99933 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00353 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99705 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 60.00133 * 25 23 21 28 28 H 1.48500 * 109.47454 * 300.00126 * 25 23 21 29 29 C 1.47080 * 108.28427 * 333.21849 * 16 13 12 30 30 H 1.08996 * 109.47062 * 299.99567 * 1 2 3 31 31 H 1.09000 * 109.47390 * 59.99840 * 1 2 3 32 32 H 1.09002 * 109.47222 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47074 * 240.00782 * 2 1 3 34 34 H 1.09000 * 109.47390 * 120.00160 * 2 1 3 35 35 H 1.08996 * 109.46994 * 60.00391 * 3 2 1 36 36 H 1.09000 * 109.47315 * 300.00206 * 3 2 1 37 37 H 1.08996 * 109.47335 * 60.00225 * 4 3 2 38 38 H 1.09000 * 109.47051 * 299.99993 * 4 3 2 39 39 H 1.09008 * 109.47133 * 60.00392 * 5 4 3 40 40 H 1.09000 * 109.47315 * 299.99832 * 5 4 3 41 41 H 1.00898 * 111.00361 * 303.95944 * 6 5 4 42 42 H 1.08997 * 109.32765 * 56.07028 * 9 7 6 43 43 H 1.09009 * 110.53956 * 295.23545 * 9 7 6 44 44 H 1.08997 * 111.23872 * 191.43912 * 12 10 9 45 45 H 1.08999 * 111.23392 * 315.84552 * 12 10 9 46 46 H 1.09010 * 109.52887 * 64.75187 * 15 7 6 47 47 H 1.09000 * 109.53030 * 304.52842 * 15 7 6 48 48 H 1.08995 * 109.47138 * 59.99991 * 19 17 16 49 49 H 1.08998 * 109.47102 * 300.00238 * 19 17 16 50 50 H 0.97001 * 120.00200 * 359.97438 * 24 23 21 51 51 H 1.09006 * 109.97512 * 120.69256 * 29 16 13 52 52 H 1.09001 * 109.97777 * 241.93871 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 -0.0013 6 7 5.5488 2.8852 -0.0013 7 6 6.0753 4.2566 -0.0025 8 1 5.4121 4.8953 0.5809 9 6 7.4741 4.2605 0.6433 10 6 8.0526 5.6823 0.5234 11 1 8.9527 5.8277 1.1208 12 6 8.2702 5.9639 -0.9896 13 6 6.7987 6.1634 -1.4482 14 1 6.7274 6.6621 -2.4149 15 6 6.1392 4.7731 -1.4412 16 7 6.1851 6.9522 -0.3594 17 6 5.1319 7.7839 -0.4840 18 8 4.6062 7.9390 -1.5659 19 6 4.6076 8.5213 0.7212 20 16 3.2003 9.5499 0.2339 21 6 2.7985 10.2752 1.7887 22 1 3.3765 10.0259 2.6663 23 6 1.7399 11.1676 1.8853 24 7 1.0358 11.4718 0.8156 25 14 1.3135 11.9359 3.5337 26 1 0.1524 12.8471 3.3697 27 1 2.4791 12.7061 4.0372 28 1 0.9705 10.8660 4.5047 29 6 6.9168 6.6688 0.8846 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6765 1.9564 -0.8899 37 1 3.9329 0.9289 -0.8908 38 1 3.9336 0.9286 0.8891 39 1 3.7169 3.3992 0.8888 40 1 3.7161 3.3987 -0.8913 41 1 5.9105 2.3594 0.7802 42 1 8.1179 3.5583 0.1137 43 1 7.4108 3.9794 1.6946 44 1 8.8607 6.8673 -1.1421 45 1 8.7259 5.1088 -1.4888 46 1 5.1302 4.8464 -1.8472 47 1 6.7289 4.0868 -2.0489 48 1 5.3951 9.1533 1.1315 49 1 4.2880 7.8029 1.4760 50 1 1.2570 11.0726 -0.0403 51 1 7.3380 7.5902 1.2870 52 1 6.2473 6.2153 1.6154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108625068.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:17 Heat of formation + Delta-G solvation = -81.002574 kcal Electronic energy + Delta-G solvation = -27989.082115 eV Core-core repulsion = 24305.360192 eV Total energy + Delta-G solvation = -3683.721923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16426 -39.67325 -37.91622 -36.09604 -34.79350 -34.02523 -32.47522 -32.15663 -30.40247 -29.23853 -27.15787 -26.87233 -25.97197 -23.42702 -22.82303 -22.31694 -21.87665 -20.83280 -20.37538 -19.92807 -18.30941 -17.66843 -17.02192 -16.93903 -16.38870 -16.10286 -15.95823 -15.89371 -15.67165 -15.00237 -14.95423 -14.66392 -14.54509 -14.27507 -14.22394 -13.95961 -13.94412 -13.77351 -13.55874 -13.35500 -13.22440 -12.94455 -12.90023 -12.76840 -12.52658 -12.34729 -11.98709 -11.97926 -11.92893 -11.77477 -11.64574 -11.58559 -11.44726 -11.23781 -11.13590 -11.05035 -11.03798 -10.38739 -9.77195 -9.47206 -8.97110 -8.94059 -6.33193 1.09379 1.42481 1.48435 1.57899 1.78300 1.96379 2.30351 2.98224 2.99194 3.04473 3.37358 3.42288 3.71840 3.78003 3.88186 3.93220 4.00260 4.02961 4.09791 4.13798 4.17654 4.21094 4.26529 4.29283 4.40529 4.47731 4.54123 4.55572 4.59705 4.63296 4.69041 4.78054 4.83759 4.87380 4.96658 4.98361 5.01186 5.08188 5.13704 5.16494 5.18640 5.22190 5.27155 5.29161 5.37007 5.39034 5.45086 5.58567 5.98150 6.09791 6.32097 6.49056 6.99051 7.02176 8.46203 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007356 B = 0.003181 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.247129 B = 8799.823268 C =11536.378051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.123 4.123 4 C -0.103 4.103 5 C 0.061 3.939 6 N -0.680 5.680 7 C 0.088 3.912 8 H 0.020 0.980 9 C -0.108 4.108 10 C -0.082 4.082 11 H 0.139 0.861 12 C -0.114 4.114 13 C 0.121 3.879 14 H 0.077 0.923 15 C -0.106 4.106 16 N -0.608 5.608 17 C 0.543 3.457 18 O -0.569 6.569 19 C -0.098 4.098 20 S -0.195 6.195 21 C -0.614 4.614 22 H 0.074 0.926 23 C -0.018 4.018 24 N -0.912 5.912 25 Si 1.137 2.863 26 H -0.279 1.279 27 H -0.262 1.262 28 H -0.263 1.263 29 C 0.088 3.912 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.014 0.986 40 H 0.044 0.956 41 H 0.351 0.649 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.023 0.977 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.260 0.740 51 H 0.077 0.923 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.785 -24.217 3.294 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.161 4.161 4 C -0.141 4.141 5 C -0.069 4.069 6 N -0.312 5.312 7 C -0.022 4.022 8 H 0.038 0.962 9 C -0.145 4.145 10 C -0.101 4.101 11 H 0.157 0.843 12 C -0.152 4.152 13 C 0.018 3.982 14 H 0.095 0.905 15 C -0.145 4.145 16 N -0.342 5.342 17 C 0.331 3.669 18 O -0.448 6.448 19 C -0.249 4.249 20 S 0.032 5.968 21 C -0.761 4.761 22 H 0.092 0.908 23 C -0.222 4.222 24 N -0.547 5.547 25 Si 0.954 3.046 26 H -0.204 1.204 27 H -0.186 1.186 28 H -0.188 1.188 29 C -0.034 4.034 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.033 0.967 40 H 0.062 0.938 41 H 0.171 0.829 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.131 0.869 46 H 0.042 0.958 47 H 0.114 0.886 48 H 0.125 0.875 49 H 0.118 0.882 50 H 0.071 0.929 51 H 0.095 0.905 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.968 -23.009 1.744 27.505 hybrid contribution 0.544 -0.378 0.871 1.094 sum 15.511 -23.388 2.615 28.185 Atomic orbital electron populations 1.21809 0.95963 1.02061 1.01558 1.21484 0.95819 0.95777 1.02516 1.21602 0.95455 0.97696 1.01373 1.21458 0.94774 0.94773 1.03060 1.21941 0.88268 0.97806 0.98855 1.60427 1.06664 1.13826 1.50299 1.21745 0.96728 0.88567 0.95111 0.96195 1.22174 0.94048 0.96845 1.01473 1.22686 0.97353 0.93227 0.96833 0.84283 1.23097 0.92418 1.03941 0.95714 1.22539 0.94471 0.90339 0.90826 0.90469 1.21935 0.99619 0.95278 0.97695 1.48632 1.30230 1.42966 1.12379 1.19690 0.79421 0.78772 0.89005 1.90678 1.59037 1.65380 1.29736 1.23126 1.01055 1.01307 0.99417 1.85068 1.38098 1.55515 1.18103 1.24006 1.23206 1.34410 0.94491 0.90780 1.27894 0.91756 0.94544 1.07966 1.70916 1.40218 1.42692 1.00833 0.82724 0.77113 0.76192 0.68553 1.20369 1.18633 1.18753 1.22562 0.94544 1.00490 0.85787 0.93087 0.93290 0.91735 0.91555 0.91237 0.92802 0.93197 0.91033 0.90729 0.96727 0.93773 0.82896 0.88528 0.89781 0.90020 0.86871 0.95827 0.88576 0.87506 0.88213 0.92929 0.90482 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.12 -1.73 5.93 30.59 0.18 -1.55 16 3 C -0.12 -2.21 5.21 30.60 0.16 -2.05 16 4 C -0.10 -1.72 5.47 30.60 0.17 -1.55 16 5 C 0.06 1.31 5.47 86.30 0.47 1.78 16 6 N -0.68 -12.02 6.31 -489.70 -3.09 -15.11 16 7 C 0.09 1.69 2.12 45.28 0.10 1.78 16 8 H 0.02 0.51 5.58 -2.39 -0.01 0.50 16 9 C -0.11 -1.17 4.85 31.28 0.15 -1.02 16 10 C -0.08 -0.92 4.27 -9.05 -0.04 -0.96 16 11 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 12 C -0.11 -1.53 6.21 32.26 0.20 -1.33 16 13 C 0.12 2.89 3.99 45.87 0.18 3.08 16 14 H 0.08 2.19 8.02 -2.39 -0.02 2.17 16 15 C -0.11 -2.44 5.19 30.89 0.16 -2.28 16 16 N -0.61 -17.53 2.37 -783.74 -1.85 -19.38 16 17 C 0.54 22.13 7.87 87.66 0.69 22.82 16 18 O -0.57 -28.51 16.12 -3.03 -0.05 -28.56 16 19 C -0.10 -4.20 5.36 71.24 0.38 -3.81 16 20 S -0.19 -11.18 19.60 -56.49 -1.11 -12.29 16 21 C -0.61 -36.28 9.50 67.95 0.65 -35.63 16 22 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 23 C -0.02 -1.09 5.49 84.86 0.47 -0.63 16 24 N -0.91 -58.97 13.67 21.65 0.30 -58.68 16 25 Si 1.14 49.85 29.92 68.60 2.05 51.90 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 27 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 28 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 29 C 0.09 1.72 5.23 86.85 0.45 2.17 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.01 0.35 8.05 -2.38 -0.02 0.33 16 40 H 0.04 1.19 7.52 -2.39 -0.02 1.18 16 41 H 0.35 4.64 8.33 -89.70 -0.75 3.89 16 42 H 0.10 0.78 8.01 -2.39 -0.02 0.76 16 43 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.11 1.01 7.80 -2.39 -0.02 0.99 16 46 H 0.02 0.72 7.57 -2.38 -0.02 0.70 16 47 H 0.10 1.83 8.01 -2.39 -0.02 1.81 16 48 H 0.11 4.20 8.14 -2.40 -0.02 4.18 16 49 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 50 H 0.26 17.54 7.12 -92.71 -0.66 16.88 16 51 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 52 H 0.07 1.38 6.74 -2.39 -0.02 1.36 16 Total: -1.00 -80.53 414.07 1.57 -78.96 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.24 Total: 23.95 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 5.09 Total: -20.79 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -4.65 Total: -93.17 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Atomic # 16 Polarization: -11.18 SS G_CDS: -1.11 Total: -12.29 kcal Total: -80.53 1.57 -78.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108625068.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.045 kcal (2) G-P(sol) polarization free energy of solvation -80.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds