Wall clock time and date at job start Sat Apr 11 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47241 * 2 1 4 4 C 1.52998 * 109.47052 * 120.00003 * 2 1 3 5 5 C 1.53004 * 109.47086 * 65.00096 * 4 2 1 6 6 C 1.53001 * 109.47219 * 180.02562 * 5 4 2 7 7 N 1.46902 * 109.46950 * 181.02809 * 6 5 4 8 8 C 1.50651 * 110.99938 * 175.28537 * 7 6 5 9 9 H 1.09006 * 115.87479 * 63.34268 * 8 7 6 10 10 C 1.55846 * 101.02936 * 297.65347 * 8 7 6 11 11 C 1.54838 * 103.51815 * 327.00386 * 10 8 7 12 12 C 1.50652 * 111.00257 * 67.19602 * 7 6 5 13 13 H 1.09004 * 115.87752 * 296.65343 * 12 7 6 14 14 C 1.55847 * 101.02782 * 170.23651 * 12 7 6 15 15 H 1.08996 * 110.61093 * 85.51359 * 14 12 7 16 16 N 1.46501 * 110.61052 * 208.33740 * 14 12 7 17 17 C 1.34770 * 120.00587 * 274.35374 * 16 14 12 18 18 O 1.21286 * 119.99717 * 359.97438 * 17 16 14 19 19 C 1.50696 * 120.00337 * 180.02562 * 17 16 14 20 20 S 1.80997 * 109.47149 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00271 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99783 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00271 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00331 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99945 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47395 * 59.99813 * 25 23 21 27 27 H 1.48499 * 109.47296 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47201 * 299.99541 * 25 23 21 29 29 C 1.54830 * 103.51821 * 327.00324 * 14 12 7 30 30 H 1.08997 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47145 * 300.00175 * 1 2 3 32 32 H 1.09002 * 109.46544 * 60.00066 * 1 2 3 33 33 H 1.09004 * 109.47225 * 239.99760 * 2 1 3 34 34 H 1.08999 * 109.47103 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46825 * 299.99697 * 3 2 1 36 36 H 1.08996 * 109.46527 * 60.00193 * 3 2 1 37 37 H 1.09003 * 109.47454 * 305.00543 * 4 2 1 38 38 H 1.08998 * 109.47778 * 184.99592 * 4 2 1 39 39 H 1.08993 * 109.47048 * 59.99652 * 5 4 2 40 40 H 1.09000 * 109.46992 * 299.99875 * 5 4 2 41 41 H 1.08991 * 109.47450 * 61.02115 * 6 5 4 42 42 H 1.09004 * 109.46434 * 301.02149 * 6 5 4 43 43 H 1.09005 * 110.61599 * 85.50995 * 10 8 7 44 44 H 1.09001 * 110.61763 * 208.34242 * 10 8 7 45 45 H 1.09003 * 110.61126 * 118.51052 * 11 10 8 46 46 H 1.08999 * 110.61515 * 241.33443 * 11 10 8 47 47 H 0.97005 * 119.99546 * 94.35548 * 16 14 12 48 48 H 1.08997 * 109.47300 * 299.99762 * 19 17 16 49 49 H 1.09000 * 109.47114 * 60.00454 * 19 17 16 50 50 H 0.96994 * 120.00571 * 179.97438 * 24 23 21 51 51 H 1.08993 * 110.61356 * 241.49018 * 29 14 12 52 52 H 1.09005 * 110.60791 * 118.50773 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1879 6 6 2.1446 -2.9167 2.4375 7 7 1.7773 -4.3373 2.3669 8 6 2.3608 -5.1040 3.5250 9 1 2.0074 -4.8132 4.5144 10 6 3.8864 -4.9109 3.2719 11 6 3.9939 -4.8621 1.7281 12 6 2.5188 -5.0321 1.2547 13 1 2.3044 -4.6781 0.2462 14 6 2.1691 -6.5221 1.5486 15 1 1.2180 -6.7908 1.0891 16 7 3.2371 -7.4057 1.0743 17 6 3.2478 -7.8224 -0.2073 18 8 2.3729 -7.4662 -0.9680 19 6 4.3461 -8.7317 -0.6949 20 16 4.0828 -9.1111 -2.4449 21 6 5.4693 -10.1566 -2.7434 22 1 6.1620 -10.3762 -1.9443 23 6 5.6714 -10.6981 -4.0053 24 7 4.8270 -10.4309 -4.9791 25 14 7.1410 -11.8071 -4.3214 26 1 7.0674 -12.9925 -3.4300 27 1 7.1296 -12.2522 -5.7381 28 1 8.3940 -11.0586 -4.0474 29 6 2.0618 -6.5709 3.0924 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 1.6053 -0.2618 2.1370 38 1 3.1263 -0.6445 1.2952 39 1 2.0698 -2.6549 0.3002 40 1 0.5489 -2.2724 1.1420 41 1 1.6956 -2.4688 3.3239 42 1 3.2293 -2.8242 2.4934 43 1 4.2329 -3.9751 3.7105 44 1 4.4514 -5.7530 3.6718 45 1 4.3936 -3.9020 1.4014 46 1 4.6140 -5.6796 1.3604 47 1 3.9366 -7.6908 1.6829 48 1 5.3093 -8.2369 -0.5709 49 1 4.3354 -9.6562 -0.1176 50 1 4.9684 -10.8090 -5.8611 51 1 2.8044 -7.2524 3.5073 52 1 1.0573 -6.8639 3.3981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108952388.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:27 Heat of formation + Delta-G solvation = -34.800201 kcal Electronic energy + Delta-G solvation = -27764.030655 eV Core-core repulsion = 24082.312218 eV Total energy + Delta-G solvation = -3681.718438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37948 -38.76595 -37.29418 -34.58012 -32.81641 -32.42664 -30.55433 -29.84498 -29.57595 -28.04135 -27.42711 -25.51647 -25.26819 -22.31914 -22.21898 -20.52609 -20.34539 -19.94854 -19.26016 -17.85527 -16.78044 -16.49201 -16.26060 -15.74074 -15.42484 -14.80694 -14.75628 -14.67564 -14.51460 -14.10829 -13.65258 -13.52407 -13.40724 -13.06917 -12.75396 -12.61608 -12.51755 -12.42134 -12.18005 -12.10277 -11.97292 -11.80903 -11.73090 -11.63487 -11.31721 -11.08380 -11.04256 -11.04009 -10.97470 -10.83695 -10.76444 -10.64047 -10.54792 -10.31360 -9.82110 -9.37039 -9.06151 -8.86638 -8.72751 -8.23464 -6.49540 -6.21316 -3.91862 3.01595 3.09818 3.23269 3.27033 3.29908 3.56190 3.87557 4.20684 4.29472 4.35277 4.51325 4.59320 4.66369 4.71115 4.84677 4.89210 5.00988 5.03472 5.07766 5.10184 5.13677 5.21103 5.26096 5.29564 5.32860 5.37144 5.40108 5.49410 5.51584 5.56934 5.60150 5.63724 5.65368 5.72077 5.74056 5.81440 5.87313 5.90764 5.94455 5.95721 5.99894 6.03052 6.10693 6.13990 6.17168 6.20622 6.38923 6.74134 6.84064 7.59233 7.72624 8.35057 8.63907 9.23789 10.86025 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.002294 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.339431 B =12201.273438 C =13534.428466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.035 3.965 7 N -0.492 5.492 8 C 0.045 3.955 9 H 0.113 0.887 10 C -0.152 4.152 11 C -0.153 4.153 12 C 0.041 3.959 13 H 0.117 0.883 14 C 0.152 3.848 15 H 0.097 0.903 16 N -0.729 5.729 17 C 0.532 3.468 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C -0.118 4.118 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.396 0.604 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.269 0.731 51 H 0.075 0.925 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 18.267 19.815 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.093 4.093 7 N -0.215 5.215 8 C -0.063 4.063 9 H 0.131 0.869 10 C -0.191 4.191 11 C -0.192 4.192 12 C -0.068 4.068 13 H 0.135 0.865 14 C 0.046 3.954 15 H 0.115 0.885 16 N -0.384 5.384 17 C 0.318 3.682 18 O -0.388 6.388 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 C -0.156 4.156 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.231 0.769 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.079 0.921 51 H 0.094 0.906 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.620 18.837 18.295 27.081 hybrid contribution 3.348 -1.112 1.029 3.675 sum -3.272 17.726 19.324 26.426 Atomic orbital electron populations 1.21888 0.95211 1.02108 1.01411 1.21123 0.96038 0.95990 0.98565 1.21843 1.00861 0.96170 1.01583 1.21594 1.00530 0.95062 0.97738 1.21628 1.02081 0.94302 0.97580 1.22353 0.99165 0.88960 0.98847 1.67649 1.49535 1.01852 1.02448 1.24434 0.92233 0.94031 0.95645 0.86890 1.23274 0.97500 1.01973 0.96334 1.23205 0.98602 1.02516 0.94915 1.24780 0.91063 0.94561 0.96434 0.86511 1.21734 0.91777 0.88243 0.93615 0.88544 1.46134 1.29211 1.51101 1.11918 1.20309 0.86461 0.80184 0.81239 1.90707 1.37687 1.56000 1.54361 1.23536 0.99361 1.00767 1.06794 1.85399 1.36739 1.62820 0.98259 1.22826 1.12114 1.34361 0.99145 0.91028 1.24987 0.97171 0.96384 0.95030 1.70002 1.35474 1.42620 1.02179 0.86234 0.81601 0.80260 0.77457 1.19945 1.20807 1.19963 1.22877 1.02768 0.95560 0.94445 0.92148 0.92918 0.92952 0.91130 0.92827 0.92779 0.92877 0.92128 0.92287 0.91868 0.90930 0.91148 0.93677 0.91696 0.91086 0.91692 0.90284 0.76934 0.89397 0.89303 0.92124 0.90601 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.95 37.16 0.33 -0.80 16 2 C -0.10 -0.77 2.92 -90.62 -0.26 -1.03 16 3 C -0.15 -1.02 9.19 37.16 0.34 -0.68 16 4 C -0.11 -0.85 4.68 -26.73 -0.13 -0.97 16 5 C -0.12 -1.05 5.01 -26.73 -0.13 -1.18 16 6 C 0.04 0.31 4.67 -3.82 -0.02 0.29 16 7 N -0.49 -4.91 5.63 -205.60 -1.16 -6.06 16 8 C 0.05 0.37 4.96 -62.56 -0.31 0.06 16 9 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 10 C -0.15 -1.22 5.63 -24.24 -0.14 -1.36 16 11 C -0.15 -1.56 5.51 -24.24 -0.13 -1.70 16 12 C 0.04 0.48 4.26 -62.56 -0.27 0.21 16 13 H 0.12 1.61 7.13 -51.93 -0.37 1.24 16 14 C 0.15 1.83 3.06 -65.45 -0.20 1.63 16 15 H 0.10 1.40 7.70 -51.93 -0.40 1.00 16 16 N -0.73 -9.42 3.64 -51.41 -0.19 -9.61 16 17 C 0.53 9.68 7.84 -10.99 -0.09 9.60 16 18 O -0.51 -11.47 15.59 5.55 0.09 -11.38 16 19 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 22 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 25 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 C -0.12 -1.04 6.20 -24.25 -0.15 -1.19 16 30 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.65 6.78 -51.93 -0.35 0.30 16 40 H 0.07 0.69 6.57 -51.93 -0.34 0.35 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.39 4.86 -51.93 -0.25 0.14 16 43 H 0.06 0.49 7.30 -51.93 -0.38 0.12 16 44 H 0.07 0.52 7.82 -51.93 -0.41 0.11 16 45 H 0.06 0.67 7.25 -51.93 -0.38 0.29 16 46 H 0.08 0.88 6.51 -51.93 -0.34 0.54 16 47 H 0.40 4.03 8.03 -40.82 -0.33 3.70 16 48 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 49 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 50 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 51 H 0.08 0.57 7.35 -51.93 -0.38 0.19 16 52 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -32.79 409.37 -11.63 -44.42 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -9.31 Total: 2.24 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.73 Total: -12.90 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.61 Total: -41.12 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.79 -11.63 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108952388.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.618 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds