Wall clock time and date at job start Sat Apr 11 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47241 * 2 1 4 4 C 1.52998 * 109.47052 * 120.00003 * 2 1 3 5 5 C 1.53004 * 109.47086 * 65.00096 * 4 2 1 6 6 C 1.53001 * 109.47219 * 180.02562 * 5 4 2 7 7 N 1.46902 * 109.46950 * 181.02809 * 6 5 4 8 8 C 1.50651 * 110.99938 * 175.28537 * 7 6 5 9 9 H 1.09006 * 115.87479 * 63.34268 * 8 7 6 10 10 C 1.55846 * 101.02936 * 297.65347 * 8 7 6 11 11 C 1.54838 * 103.51815 * 327.00386 * 10 8 7 12 12 C 1.50652 * 111.00257 * 67.19602 * 7 6 5 13 13 H 1.09004 * 115.87752 * 296.65343 * 12 7 6 14 14 C 1.55847 * 101.02782 * 170.23651 * 12 7 6 15 15 H 1.08996 * 110.61093 * 85.51359 * 14 12 7 16 16 N 1.46501 * 110.61052 * 208.33740 * 14 12 7 17 17 C 1.34770 * 120.00587 * 274.35374 * 16 14 12 18 18 O 1.21286 * 119.99717 * 359.97438 * 17 16 14 19 19 C 1.50696 * 120.00337 * 180.02562 * 17 16 14 20 20 S 1.80997 * 109.47149 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00271 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99783 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00271 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00331 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99945 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47395 * 59.99813 * 25 23 21 27 27 H 1.48499 * 109.47296 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47201 * 299.99541 * 25 23 21 29 29 C 1.54830 * 103.51821 * 327.00324 * 14 12 7 30 30 H 1.08997 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47145 * 300.00175 * 1 2 3 32 32 H 1.09002 * 109.46544 * 60.00066 * 1 2 3 33 33 H 1.09004 * 109.47225 * 239.99760 * 2 1 3 34 34 H 1.08999 * 109.47103 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46825 * 299.99697 * 3 2 1 36 36 H 1.08996 * 109.46527 * 60.00193 * 3 2 1 37 37 H 1.09003 * 109.47454 * 305.00543 * 4 2 1 38 38 H 1.08998 * 109.47778 * 184.99592 * 4 2 1 39 39 H 1.08993 * 109.47048 * 59.99652 * 5 4 2 40 40 H 1.09000 * 109.46992 * 299.99875 * 5 4 2 41 41 H 1.08991 * 109.47450 * 61.02115 * 6 5 4 42 42 H 1.09004 * 109.46434 * 301.02149 * 6 5 4 43 43 H 1.09005 * 110.61599 * 85.50995 * 10 8 7 44 44 H 1.09001 * 110.61763 * 208.34242 * 10 8 7 45 45 H 1.09003 * 110.61126 * 118.51052 * 11 10 8 46 46 H 1.08999 * 110.61515 * 241.33443 * 11 10 8 47 47 H 0.97005 * 119.99546 * 94.35548 * 16 14 12 48 48 H 1.08997 * 109.47300 * 299.99762 * 19 17 16 49 49 H 1.09000 * 109.47114 * 60.00454 * 19 17 16 50 50 H 0.96994 * 120.00571 * 179.97438 * 24 23 21 51 51 H 1.08993 * 110.61356 * 241.49018 * 29 14 12 52 52 H 1.09005 * 110.60791 * 118.50773 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1879 6 6 2.1446 -2.9167 2.4375 7 7 1.7773 -4.3373 2.3669 8 6 2.3608 -5.1040 3.5250 9 1 2.0074 -4.8132 4.5144 10 6 3.8864 -4.9109 3.2719 11 6 3.9939 -4.8621 1.7281 12 6 2.5188 -5.0321 1.2547 13 1 2.3044 -4.6781 0.2462 14 6 2.1691 -6.5221 1.5486 15 1 1.2180 -6.7908 1.0891 16 7 3.2371 -7.4057 1.0743 17 6 3.2478 -7.8224 -0.2073 18 8 2.3729 -7.4662 -0.9680 19 6 4.3461 -8.7317 -0.6949 20 16 4.0828 -9.1111 -2.4449 21 6 5.4693 -10.1566 -2.7434 22 1 6.1620 -10.3762 -1.9443 23 6 5.6714 -10.6981 -4.0053 24 7 4.8270 -10.4309 -4.9791 25 14 7.1410 -11.8071 -4.3214 26 1 7.0674 -12.9925 -3.4300 27 1 7.1296 -12.2522 -5.7381 28 1 8.3940 -11.0586 -4.0474 29 6 2.0618 -6.5709 3.0924 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 1.6053 -0.2618 2.1370 38 1 3.1263 -0.6445 1.2952 39 1 2.0698 -2.6549 0.3002 40 1 0.5489 -2.2724 1.1420 41 1 1.6956 -2.4688 3.3239 42 1 3.2293 -2.8242 2.4934 43 1 4.2329 -3.9751 3.7105 44 1 4.4514 -5.7530 3.6718 45 1 4.3936 -3.9020 1.4014 46 1 4.6140 -5.6796 1.3604 47 1 3.9366 -7.6908 1.6829 48 1 5.3093 -8.2369 -0.5709 49 1 4.3354 -9.6562 -0.1176 50 1 4.9684 -10.8090 -5.8611 51 1 2.8044 -7.2524 3.5073 52 1 1.0573 -6.8639 3.3981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108952388.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:26 Heat of formation + Delta-G solvation = -55.352498 kcal Electronic energy + Delta-G solvation = -27764.921870 eV Core-core repulsion = 24082.312218 eV Total energy + Delta-G solvation = -3682.609652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25179 -40.15959 -37.97805 -35.70809 -34.58704 -33.70082 -31.62748 -30.86363 -30.32088 -29.20857 -28.03291 -27.65105 -26.03082 -23.23278 -23.00268 -21.79876 -21.03406 -20.67434 -20.18341 -19.81001 -17.99899 -17.56533 -17.15793 -16.90272 -16.85757 -16.32599 -16.04494 -15.91323 -15.36121 -15.13560 -14.78191 -14.61064 -14.40986 -14.16175 -14.08817 -13.68422 -13.44473 -13.20000 -13.16657 -13.10178 -12.87794 -12.85665 -12.76471 -12.65821 -12.60939 -12.42718 -12.34519 -12.07596 -11.86908 -11.75464 -11.68865 -11.49572 -11.33623 -11.26782 -11.13172 -11.10900 -10.91211 -10.27564 -10.03879 -9.52317 -8.66862 -8.34591 -6.12809 1.26571 1.43471 1.46548 1.56188 1.62135 2.23298 2.28330 2.94925 2.99313 3.32866 3.51651 3.56383 3.77430 3.89992 3.95623 3.98401 4.05680 4.11381 4.19271 4.25976 4.27412 4.30536 4.34896 4.36855 4.49957 4.52702 4.59896 4.63122 4.71801 4.76567 4.81731 4.83745 4.88667 4.95246 4.99237 5.01221 5.08047 5.10312 5.12023 5.15170 5.24998 5.27627 5.30162 5.35752 5.41169 5.45923 5.52283 5.53119 5.74997 6.09488 6.19355 6.52301 7.06405 7.27376 8.74365 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.002294 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.339431 B =12201.273438 C =13534.428466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.104 4.104 5 C -0.114 4.114 6 C 0.039 3.961 7 N -0.503 5.503 8 C 0.052 3.948 9 H 0.139 0.861 10 C -0.143 4.143 11 C -0.151 4.151 12 C 0.036 3.964 13 H 0.082 0.918 14 C 0.148 3.852 15 H 0.064 0.936 16 N -0.700 5.700 17 C 0.534 3.466 18 O -0.564 6.564 19 C -0.129 4.129 20 S -0.152 6.152 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 0.998 3.002 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.262 1.262 29 C -0.109 4.109 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.415 0.585 48 H 0.108 0.892 49 H 0.110 0.890 50 H 0.271 0.729 51 H 0.099 0.901 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 18.406 23.355 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.089 4.089 7 N -0.226 5.226 8 C -0.056 4.056 9 H 0.156 0.844 10 C -0.182 4.182 11 C -0.190 4.190 12 C -0.074 4.074 13 H 0.100 0.900 14 C 0.042 3.958 15 H 0.083 0.917 16 N -0.354 5.354 17 C 0.320 3.680 18 O -0.442 6.442 19 C -0.280 4.280 20 S 0.075 5.925 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.186 1.186 29 C -0.147 4.147 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.253 0.747 48 H 0.126 0.874 49 H 0.128 0.872 50 H 0.080 0.920 51 H 0.117 0.883 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.830 18.991 21.904 29.390 hybrid contribution 2.716 -1.073 -0.004 2.920 sum -2.114 17.918 21.900 28.375 Atomic orbital electron populations 1.21867 0.95068 1.01555 1.01937 1.21138 0.96203 0.96636 0.98055 1.21816 1.00918 0.95348 1.02088 1.21533 1.00623 0.93961 0.98037 1.21564 1.01269 0.95290 0.97040 1.22362 0.99430 0.88205 0.98944 1.67642 1.49782 1.02621 1.02571 1.24582 0.92243 0.92935 0.95862 0.84353 1.23247 0.97544 1.03365 0.94024 1.23164 0.96926 1.01889 0.97016 1.24546 0.92765 0.94360 0.95716 0.89997 1.21816 0.89793 0.88071 0.96114 0.91724 1.45838 1.29617 1.49844 1.10131 1.20074 0.85435 0.79923 0.82529 1.90700 1.39418 1.57930 1.56104 1.23367 1.00891 1.02349 1.01380 1.85611 1.37979 1.63543 1.05377 1.23170 1.12097 1.34281 0.99847 0.89882 1.26140 1.00493 0.97966 0.94642 1.70177 1.37801 1.44095 1.02742 0.85006 0.77393 0.78121 0.77494 1.18595 1.20453 1.18631 1.22881 1.03968 0.96813 0.91048 0.93232 0.91940 0.92856 0.92814 0.92716 0.92696 0.91954 0.90882 0.92127 0.94284 0.91876 0.89583 0.93309 0.90566 0.89385 0.92182 0.91192 0.74706 0.87363 0.87207 0.92010 0.88298 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.95 71.98 0.64 -1.59 16 2 C -0.10 -1.59 2.92 -10.79 -0.03 -1.62 16 3 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 4 C -0.10 -1.51 4.68 30.60 0.14 -1.37 16 5 C -0.11 -2.07 5.01 30.60 0.15 -1.92 16 6 C 0.04 0.62 4.67 86.30 0.40 1.03 16 7 N -0.50 -9.46 5.63 -804.38 -4.53 -13.99 16 8 C 0.05 0.67 4.96 46.14 0.23 0.90 16 9 H 0.14 1.23 8.14 -2.38 -0.02 1.21 16 10 C -0.14 -1.79 5.63 32.21 0.18 -1.61 16 11 C -0.15 -2.89 5.51 32.21 0.18 -2.71 16 12 C 0.04 0.85 4.26 46.15 0.20 1.05 16 13 H 0.08 2.50 7.13 -2.39 -0.02 2.48 16 14 C 0.15 3.49 3.06 46.60 0.14 3.64 16 15 H 0.06 1.97 7.70 -2.39 -0.02 1.95 16 16 N -0.70 -17.40 3.64 -434.96 -1.58 -18.98 16 17 C 0.53 19.68 7.84 87.66 0.69 20.37 16 18 O -0.56 -26.50 15.59 -3.05 -0.05 -26.55 16 19 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 20 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 21 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 22 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.70 5.49 84.86 0.47 1.17 16 24 N -0.91 -56.42 13.22 21.65 0.29 -56.14 16 25 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 29 C -0.11 -1.60 6.20 32.20 0.20 -1.40 16 30 H 0.05 0.85 6.57 -2.39 -0.02 0.83 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.04 0.89 6.78 -2.39 -0.02 0.87 16 40 H 0.06 1.25 6.57 -2.39 -0.02 1.24 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 0.76 4.86 -2.39 -0.01 0.75 16 43 H 0.08 0.85 7.30 -2.38 -0.02 0.83 16 44 H 0.09 0.86 7.82 -2.39 -0.02 0.84 16 45 H 0.06 1.20 7.25 -2.39 -0.02 1.18 16 46 H 0.07 1.44 6.51 -2.39 -0.02 1.43 16 47 H 0.41 7.29 8.03 -92.70 -0.74 6.54 16 48 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 49 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 50 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 51 H 0.10 1.04 7.35 -2.39 -0.02 1.02 16 52 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -75.38 409.37 0.48 -74.90 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.15 Total: 25.28 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 5.34 Total: -20.52 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -5.83 Total: -89.11 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -75.38 0.48 -74.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108952388.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.550 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds