Wall clock time and date at job start Sat Apr 11 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46791 * 2 1 4 4 C 1.52996 * 109.47098 * 119.99941 * 2 1 3 5 5 C 1.52996 * 109.47102 * 65.00492 * 4 2 1 6 6 C 1.53000 * 109.47584 * 179.97438 * 5 4 2 7 7 N 1.46899 * 109.47500 * 179.97438 * 6 5 4 8 8 C 1.52215 * 111.86993 * 69.00142 * 7 6 5 9 9 H 1.08996 * 115.80484 * 295.60623 * 8 7 6 10 10 C 1.55844 * 101.42228 * 169.66079 * 8 7 6 11 11 C 1.54841 * 103.52207 * 327.20041 * 10 8 7 12 12 C 1.50645 * 110.99904 * 176.73846 * 7 6 5 13 13 H 1.09008 * 115.88069 * 63.34776 * 12 7 6 14 14 C 1.55849 * 101.02812 * 297.65253 * 12 7 6 15 15 H 1.09006 * 110.61274 * 208.49929 * 14 12 7 16 16 N 1.46492 * 110.61457 * 85.67433 * 14 12 7 17 17 C 1.34784 * 120.00164 * 163.55758 * 16 14 12 18 18 O 1.21276 * 119.99887 * 0.02562 * 17 16 14 19 19 C 1.50694 * 120.00181 * 179.97438 * 17 16 14 20 20 S 1.80997 * 109.47260 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00048 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00180 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00051 * 179.97438 * 21 20 19 24 24 N 1.31637 * 120.00057 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00183 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47158 * 60.00033 * 25 23 21 27 27 H 1.48496 * 109.47303 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46912 * 300.00227 * 25 23 21 29 29 C 1.54833 * 103.65697 * 327.08287 * 14 12 7 30 30 H 1.09002 * 109.47405 * 299.99985 * 1 2 3 31 31 H 1.08999 * 109.47401 * 59.99659 * 1 2 3 32 32 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47145 * 240.00433 * 2 1 3 34 34 H 1.09002 * 109.46926 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47264 * 299.99968 * 3 2 1 36 36 H 1.08997 * 109.46922 * 60.00297 * 3 2 1 37 37 H 1.08994 * 109.47506 * 304.99904 * 4 2 1 38 38 H 1.09005 * 109.46861 * 184.99959 * 4 2 1 39 39 H 1.09006 * 109.47341 * 59.99741 * 5 4 2 40 40 H 1.09001 * 109.46744 * 299.99970 * 5 4 2 41 41 H 1.08998 * 109.46642 * 59.99351 * 6 5 4 42 42 H 1.09000 * 109.46483 * 300.00054 * 6 5 4 43 43 H 1.09005 * 110.61374 * 208.69525 * 10 8 7 44 44 H 1.08999 * 110.75104 * 85.77304 * 10 8 7 45 45 H 1.08989 * 110.61228 * 241.49236 * 11 10 8 46 46 H 1.08998 * 110.74600 * 118.56432 * 11 10 8 47 47 H 0.97000 * 120.00300 * 343.55802 * 16 14 12 48 48 H 1.09002 * 109.47625 * 300.00537 * 19 17 16 49 49 H 1.09000 * 109.46915 * 60.00187 * 19 17 16 50 50 H 0.96988 * 119.99948 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.60975 * 118.42986 * 29 14 12 52 52 H 1.08997 * 110.61681 * 241.41296 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 6 2.1458 -2.9169 2.4368 7 7 1.7567 -4.3322 2.3782 8 6 2.5064 -5.0816 1.2858 9 1 2.3044 -4.7587 0.2645 10 6 2.1309 -6.5587 1.6113 11 6 1.9977 -6.5668 3.1539 12 6 2.3105 -5.0935 3.5543 13 1 1.9472 -4.7849 4.5346 14 6 3.8427 -4.9280 3.3218 15 1 4.3877 -5.7753 3.7381 16 7 4.3203 -3.6723 3.9060 17 6 5.6387 -3.4842 4.1136 18 8 6.4296 -4.3542 3.8164 19 6 6.1301 -2.1923 4.7140 20 16 7.9330 -2.2443 4.8647 21 6 8.2268 -0.6580 5.5731 22 1 7.3983 0.0042 5.7771 23 6 9.5229 -0.2592 5.8690 24 7 10.5328 -1.0661 5.6199 25 14 9.8344 1.4228 6.6193 26 1 9.1223 1.5249 7.9184 27 1 11.2919 1.6053 6.8376 28 1 9.3367 2.4757 5.6979 29 6 3.9773 -4.8978 1.7796 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6054 -0.2618 2.1369 38 1 3.1263 -0.6443 1.2951 39 1 2.0699 -2.6549 0.3001 40 1 0.5490 -2.2723 1.1419 41 1 1.7115 -2.4575 3.3247 42 1 3.2321 -2.8399 2.4822 43 1 2.9231 -7.2355 1.2910 44 1 1.1844 -6.8287 1.1430 45 1 2.7237 -7.2476 3.5981 46 1 0.9854 -6.8389 3.4526 47 1 3.6878 -2.9763 4.1434 48 1 5.8434 -1.3604 4.0707 49 1 5.6864 -2.0582 5.7005 50 1 11.4384 -0.7876 5.8271 51 1 4.3968 -3.9474 1.4496 52 1 4.5890 -5.7300 1.4314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110301053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:37 Heat of formation + Delta-G solvation = -30.044624 kcal Electronic energy + Delta-G solvation = -28302.990066 eV Core-core repulsion = 24621.477846 eV Total energy + Delta-G solvation = -3681.512220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.42791 -38.68039 -37.26558 -34.15024 -33.54107 -32.44295 -30.38658 -29.91334 -29.68472 -27.72775 -27.39617 -25.50911 -25.29735 -22.41523 -22.23611 -20.79698 -20.26191 -19.90318 -19.21776 -17.85645 -16.91491 -16.59415 -16.17924 -15.69912 -15.14891 -14.84958 -14.80803 -14.70602 -14.39876 -14.13327 -13.76300 -13.57497 -13.31547 -13.11962 -12.70234 -12.56544 -12.52432 -12.47152 -12.30098 -12.08731 -11.82974 -11.75568 -11.67526 -11.47425 -11.40422 -11.06138 -11.05479 -11.03508 -10.96554 -10.82009 -10.80358 -10.61960 -10.56010 -10.46345 -9.83959 -9.40496 -9.07896 -8.95565 -8.66273 -8.26137 -6.51910 -6.23055 -3.93896 2.99559 3.04655 3.22294 3.26228 3.29411 3.53507 3.67560 4.19069 4.32571 4.37160 4.46337 4.62533 4.67783 4.72826 4.85429 4.93345 4.97090 5.02385 5.07467 5.11994 5.16410 5.16944 5.27540 5.36849 5.38281 5.41953 5.44214 5.48477 5.49558 5.58940 5.62372 5.67506 5.68690 5.74551 5.77818 5.84838 5.86655 5.90703 5.94574 5.98346 5.99186 6.02035 6.05586 6.10683 6.20109 6.22881 6.39475 6.61243 6.80572 7.57642 7.64398 8.33466 8.57753 9.22132 10.84338 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.003151 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.738106 B = 8884.129667 C =11496.944755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.116 4.116 5 C -0.110 4.110 6 C 0.010 3.990 7 N -0.492 5.492 8 C 0.046 3.954 9 H 0.112 0.888 10 C -0.115 4.115 11 C -0.111 4.111 12 C 0.039 3.961 13 H 0.116 0.884 14 C 0.118 3.882 15 H 0.093 0.907 16 N -0.734 5.734 17 C 0.530 3.470 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.058 6.058 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C -0.159 4.159 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.398 0.602 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.269 0.731 51 H 0.076 0.924 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.222 -4.551 -9.859 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.154 4.154 5 C -0.148 4.148 6 C -0.118 4.118 7 N -0.215 5.215 8 C -0.062 4.062 9 H 0.130 0.870 10 C -0.153 4.153 11 C -0.149 4.149 12 C -0.070 4.070 13 H 0.134 0.866 14 C 0.011 3.989 15 H 0.111 0.889 16 N -0.390 5.390 17 C 0.316 3.684 18 O -0.388 6.388 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.199 4.199 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.234 0.766 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.079 0.921 51 H 0.094 0.906 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.341 -6.001 -10.388 25.358 hybrid contribution -0.008 2.598 1.055 2.804 sum -22.349 -3.403 -9.333 24.457 Atomic orbital electron populations 1.21890 0.95406 1.01782 1.01459 1.21091 0.95757 0.96169 0.98392 1.21856 1.01255 0.95980 1.01581 1.21636 1.01128 0.94846 0.97831 1.21536 1.01541 0.94459 0.97249 1.22810 1.00985 0.88971 0.99078 1.68018 1.49397 1.01543 1.02492 1.24779 0.91023 0.94090 0.96318 0.87034 1.22580 1.01687 0.95147 0.95852 1.22520 1.02135 0.94358 0.95903 1.24692 0.91082 0.95325 0.95943 0.86632 1.22698 0.95132 0.87911 0.93147 0.88918 1.46475 1.07916 1.18708 1.65926 1.20372 0.81664 0.88893 0.77425 1.90697 1.54353 1.44231 1.49481 1.23541 1.07061 0.96825 1.03046 1.85390 0.92193 1.23482 1.82121 1.22826 0.95540 1.01997 1.48119 0.91003 1.24988 0.95001 0.98222 0.95312 1.70005 0.99347 1.35930 1.45019 0.86230 0.77382 0.82428 0.79510 1.19916 1.20788 1.19924 1.23751 0.97527 1.03284 0.95317 0.92797 0.93095 0.92413 0.91432 0.92513 0.92910 0.92708 0.91891 0.91811 0.92315 0.91260 0.91008 0.91442 0.91082 0.91069 0.90929 0.90714 0.76551 0.89371 0.89304 0.92112 0.90573 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.95 37.15 0.33 -0.75 16 2 C -0.10 -0.77 2.92 -90.62 -0.26 -1.04 16 3 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 4 C -0.12 -1.00 4.68 -26.73 -0.13 -1.13 16 5 C -0.11 -0.94 5.03 -26.73 -0.13 -1.07 16 6 C 0.01 0.09 3.59 -3.82 -0.01 0.08 16 7 N -0.49 -4.56 5.66 -204.04 -1.16 -5.71 16 8 C 0.05 0.41 4.49 -61.42 -0.28 0.14 16 9 H 0.11 0.94 7.34 -51.93 -0.38 0.56 16 10 C -0.11 -0.91 6.46 -24.24 -0.16 -1.06 16 11 C -0.11 -0.89 6.44 -24.24 -0.16 -1.05 16 12 C 0.04 0.36 4.57 -62.56 -0.29 0.07 16 13 H 0.12 1.00 8.14 -51.92 -0.42 0.58 16 14 C 0.12 1.39 2.46 -65.45 -0.16 1.23 16 15 H 0.09 1.26 7.47 -51.93 -0.39 0.88 16 16 N -0.73 -9.77 3.75 -51.41 -0.19 -9.96 16 17 C 0.53 9.79 7.81 -10.99 -0.09 9.70 16 18 O -0.51 -11.53 15.65 5.56 0.09 -11.44 16 19 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 25 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 29 C -0.16 -1.81 5.49 -24.03 -0.13 -1.94 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.52 7.01 -51.93 -0.36 0.16 16 40 H 0.07 0.60 6.57 -51.93 -0.34 0.25 16 41 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 42 H 0.07 0.72 3.53 -51.93 -0.18 0.54 16 43 H 0.07 0.54 7.86 -51.93 -0.41 0.13 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.57 7.81 -51.94 -0.41 0.17 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.40 4.41 6.50 -40.82 -0.27 4.15 16 48 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 49 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 50 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 51 H 0.08 1.00 7.08 -51.93 -0.37 0.63 16 52 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 LS Contribution 408.55 15.07 6.16 6.16 Total: -1.00 -32.80 408.55 -11.61 -44.41 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -9.31 Total: 2.95 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -0.70 Total: -13.52 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.61 Total: -41.11 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.80 -11.61 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110301053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.370 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds