Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46791 * 2 1 4 4 C 1.52996 * 109.47098 * 119.99941 * 2 1 3 5 5 C 1.52996 * 109.47102 * 65.00492 * 4 2 1 6 6 C 1.53000 * 109.47584 * 179.97438 * 5 4 2 7 7 N 1.46899 * 109.47500 * 179.97438 * 6 5 4 8 8 C 1.52215 * 111.86993 * 69.00142 * 7 6 5 9 9 H 1.08996 * 115.80484 * 295.60623 * 8 7 6 10 10 C 1.55844 * 101.42228 * 169.66079 * 8 7 6 11 11 C 1.54841 * 103.52207 * 327.20041 * 10 8 7 12 12 C 1.50645 * 110.99904 * 176.73846 * 7 6 5 13 13 H 1.09008 * 115.88069 * 63.34776 * 12 7 6 14 14 C 1.55849 * 101.02812 * 297.65253 * 12 7 6 15 15 H 1.09006 * 110.61274 * 208.49929 * 14 12 7 16 16 N 1.46492 * 110.61457 * 85.67433 * 14 12 7 17 17 C 1.34784 * 120.00164 * 163.55758 * 16 14 12 18 18 O 1.21276 * 119.99887 * 0.02562 * 17 16 14 19 19 C 1.50694 * 120.00181 * 179.97438 * 17 16 14 20 20 S 1.80997 * 109.47260 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00048 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00180 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00051 * 179.97438 * 21 20 19 24 24 N 1.31637 * 120.00057 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00183 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47158 * 60.00033 * 25 23 21 27 27 H 1.48496 * 109.47303 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46912 * 300.00227 * 25 23 21 29 29 C 1.54833 * 103.65697 * 327.08287 * 14 12 7 30 30 H 1.09002 * 109.47405 * 299.99985 * 1 2 3 31 31 H 1.08999 * 109.47401 * 59.99659 * 1 2 3 32 32 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47145 * 240.00433 * 2 1 3 34 34 H 1.09002 * 109.46926 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47264 * 299.99968 * 3 2 1 36 36 H 1.08997 * 109.46922 * 60.00297 * 3 2 1 37 37 H 1.08994 * 109.47506 * 304.99904 * 4 2 1 38 38 H 1.09005 * 109.46861 * 184.99959 * 4 2 1 39 39 H 1.09006 * 109.47341 * 59.99741 * 5 4 2 40 40 H 1.09001 * 109.46744 * 299.99970 * 5 4 2 41 41 H 1.08998 * 109.46642 * 59.99351 * 6 5 4 42 42 H 1.09000 * 109.46483 * 300.00054 * 6 5 4 43 43 H 1.09005 * 110.61374 * 208.69525 * 10 8 7 44 44 H 1.08999 * 110.75104 * 85.77304 * 10 8 7 45 45 H 1.08989 * 110.61228 * 241.49236 * 11 10 8 46 46 H 1.08998 * 110.74600 * 118.56432 * 11 10 8 47 47 H 0.97000 * 120.00300 * 343.55802 * 16 14 12 48 48 H 1.09002 * 109.47625 * 300.00537 * 19 17 16 49 49 H 1.09000 * 109.46915 * 60.00187 * 19 17 16 50 50 H 0.96988 * 119.99948 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.60975 * 118.42986 * 29 14 12 52 52 H 1.08997 * 110.61681 * 241.41296 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 6 2.1458 -2.9169 2.4368 7 7 1.7567 -4.3322 2.3782 8 6 2.5064 -5.0816 1.2858 9 1 2.3044 -4.7587 0.2645 10 6 2.1309 -6.5587 1.6113 11 6 1.9977 -6.5668 3.1539 12 6 2.3105 -5.0935 3.5543 13 1 1.9472 -4.7849 4.5346 14 6 3.8427 -4.9280 3.3218 15 1 4.3877 -5.7753 3.7381 16 7 4.3203 -3.6723 3.9060 17 6 5.6387 -3.4842 4.1136 18 8 6.4296 -4.3542 3.8164 19 6 6.1301 -2.1923 4.7140 20 16 7.9330 -2.2443 4.8647 21 6 8.2268 -0.6580 5.5731 22 1 7.3983 0.0042 5.7771 23 6 9.5229 -0.2592 5.8690 24 7 10.5328 -1.0661 5.6199 25 14 9.8344 1.4228 6.6193 26 1 9.1223 1.5249 7.9184 27 1 11.2919 1.6053 6.8376 28 1 9.3367 2.4757 5.6979 29 6 3.9773 -4.8978 1.7796 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6054 -0.2618 2.1369 38 1 3.1263 -0.6443 1.2951 39 1 2.0699 -2.6549 0.3001 40 1 0.5490 -2.2723 1.1419 41 1 1.7115 -2.4575 3.3247 42 1 3.2321 -2.8399 2.4822 43 1 2.9231 -7.2355 1.2910 44 1 1.1844 -6.8287 1.1430 45 1 2.7237 -7.2476 3.5981 46 1 0.9854 -6.8389 3.4526 47 1 3.6878 -2.9763 4.1434 48 1 5.8434 -1.3604 4.0707 49 1 5.6864 -2.0582 5.7005 50 1 11.4384 -0.7876 5.8271 51 1 4.3968 -3.9474 1.4496 52 1 4.5890 -5.7300 1.4314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110301053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = -50.240647 kcal Electronic energy + Delta-G solvation = -28303.865832 eV Core-core repulsion = 24621.477846 eV Total energy + Delta-G solvation = -3682.387986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.33345 -40.08895 -37.93689 -35.38464 -34.60345 -34.28815 -31.60334 -30.71671 -30.61665 -28.87535 -28.00175 -27.65353 -26.04979 -23.39680 -22.98433 -21.83694 -21.16108 -20.73716 -20.06869 -19.77007 -18.02059 -17.79880 -17.27851 -16.89697 -16.51796 -16.34307 -16.03377 -15.84131 -15.49953 -15.05602 -14.80074 -14.66762 -14.38664 -14.29078 -13.98823 -13.84064 -13.41030 -13.19550 -13.13989 -13.04413 -12.93521 -12.87178 -12.80831 -12.65429 -12.49295 -12.41299 -12.27617 -12.12204 -11.79095 -11.76706 -11.70183 -11.47530 -11.37567 -11.31651 -11.18706 -11.14777 -10.87208 -10.31337 -10.14584 -9.52640 -8.69358 -8.36515 -6.15028 1.23968 1.42351 1.44486 1.54356 1.54949 2.19932 2.25913 2.76446 2.97579 3.28196 3.54904 3.60564 3.65827 3.87966 3.92818 3.99146 4.06353 4.08088 4.15766 4.23493 4.24456 4.30309 4.36628 4.44494 4.47048 4.47677 4.63390 4.64762 4.68379 4.74095 4.80209 4.83298 4.90656 4.93887 4.99470 5.04900 5.09330 5.12560 5.14031 5.23485 5.25847 5.31275 5.33612 5.36302 5.39388 5.45830 5.53787 5.56280 5.66157 6.02575 6.17513 6.39409 7.04603 7.17350 8.72500 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.003151 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.738106 B = 8884.129667 C =11496.944755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.113 4.113 5 C -0.101 4.101 6 C 0.010 3.990 7 N -0.487 5.487 8 C 0.053 3.947 9 H 0.121 0.879 10 C -0.112 4.112 11 C -0.109 4.109 12 C 0.047 3.953 13 H 0.129 0.871 14 C 0.113 3.887 15 H 0.074 0.926 16 N -0.707 5.707 17 C 0.533 3.467 18 O -0.560 6.560 19 C -0.130 4.130 20 S -0.147 6.147 21 C -0.548 4.548 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.261 1.261 27 H -0.278 1.278 28 H -0.262 1.262 29 C -0.158 4.158 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.412 0.588 48 H 0.106 0.894 49 H 0.108 0.892 50 H 0.272 0.728 51 H 0.055 0.945 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.179 -3.565 -9.625 28.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.151 4.151 5 C -0.139 4.139 6 C -0.118 4.118 7 N -0.209 5.209 8 C -0.055 4.055 9 H 0.139 0.861 10 C -0.150 4.150 11 C -0.147 4.147 12 C -0.063 4.063 13 H 0.147 0.853 14 C 0.007 3.993 15 H 0.092 0.908 16 N -0.363 5.363 17 C 0.319 3.681 18 O -0.438 6.438 19 C -0.282 4.282 20 S 0.080 5.920 21 C -0.696 4.696 22 H 0.100 0.900 23 C -0.190 4.190 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.186 1.186 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.198 4.198 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.252 0.748 48 H 0.124 0.876 49 H 0.126 0.874 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.365 -5.010 -10.162 27.781 hybrid contribution 0.816 2.238 0.923 2.555 sum -24.549 -2.772 -9.239 26.377 Atomic orbital electron populations 1.21854 0.94465 1.02062 1.01790 1.21085 0.96503 0.95891 0.97912 1.21861 1.00603 0.96254 1.02004 1.21599 1.00100 0.95125 0.98322 1.21447 1.01689 0.94117 0.96647 1.22801 0.99895 0.89208 0.99913 1.68052 1.48938 1.01487 1.02446 1.24823 0.88886 0.95121 0.96706 0.86124 1.22597 1.02422 0.94110 0.95885 1.22551 1.02987 0.93260 0.95912 1.24781 0.88398 0.96450 0.96637 0.85345 1.22891 0.96971 0.86147 0.93262 0.90783 1.46246 1.06172 1.19675 1.64199 1.20114 0.82994 0.87759 0.77223 1.90685 1.55924 1.45411 1.51797 1.23377 1.01449 0.98563 1.04766 1.85559 0.99396 1.24476 1.82565 1.23171 0.96297 1.02047 1.48098 0.89978 1.26123 0.94585 1.02773 0.95556 1.70173 0.99892 1.38351 1.46337 0.85018 0.77445 0.76702 0.78942 1.18588 1.20339 1.18651 1.23690 0.99257 1.01809 0.95007 0.92666 0.92587 0.92132 0.91776 0.93543 0.92200 0.92590 0.91552 0.93407 0.92795 0.90671 0.90057 0.93163 0.90947 0.89699 0.90951 0.89208 0.74842 0.87606 0.87365 0.91954 0.92600 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.95 71.98 0.64 -1.18 16 2 C -0.10 -1.42 2.92 -10.79 -0.03 -1.45 16 3 C -0.15 -2.31 9.19 71.98 0.66 -1.65 16 4 C -0.11 -1.82 4.68 30.59 0.14 -1.67 16 5 C -0.10 -1.55 5.03 30.59 0.15 -1.40 16 6 C 0.01 0.17 3.59 86.30 0.31 0.48 16 7 N -0.49 -7.87 5.66 -799.46 -4.53 -12.39 16 8 C 0.05 0.86 4.49 45.96 0.21 1.07 16 9 H 0.12 1.80 7.34 -2.39 -0.02 1.78 16 10 C -0.11 -1.52 6.46 32.21 0.21 -1.31 16 11 C -0.11 -1.49 6.44 32.21 0.21 -1.28 16 12 C 0.05 0.76 4.57 46.15 0.21 0.97 16 13 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 14 C 0.11 2.62 2.46 46.60 0.11 2.73 16 15 H 0.07 2.04 7.47 -2.38 -0.02 2.02 16 16 N -0.71 -18.34 3.75 -434.95 -1.63 -19.97 16 17 C 0.53 19.86 7.81 87.65 0.68 20.54 16 18 O -0.56 -26.09 15.65 -3.02 -0.05 -26.13 16 19 C -0.13 -5.22 6.16 71.23 0.44 -4.78 16 20 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 21 C -0.55 -31.44 9.50 67.95 0.65 -30.80 16 22 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 23 C 0.01 0.83 5.49 84.86 0.47 1.29 16 24 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 25 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 29 C -0.16 -3.57 5.49 32.35 0.18 -3.39 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.73 6.57 -2.39 -0.02 0.71 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.91 8.14 -2.38 -0.02 0.90 16 39 H 0.05 0.88 7.01 -2.38 -0.02 0.87 16 40 H 0.07 1.10 6.57 -2.39 -0.02 1.08 16 41 H 0.08 1.21 8.04 -2.39 -0.02 1.19 16 42 H 0.05 1.02 3.53 -2.39 -0.01 1.01 16 43 H 0.07 0.98 7.86 -2.38 -0.02 0.96 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.02 7.81 -2.39 -0.02 1.00 16 46 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.41 8.43 6.50 -92.71 -0.60 7.83 16 48 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 49 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 50 H 0.27 15.56 8.31 -92.72 -0.77 14.79 16 51 H 0.06 1.49 7.08 -2.39 -0.02 1.48 16 52 H 0.07 1.65 7.85 -2.39 -0.02 1.63 16 Total: -1.00 -73.12 408.55 0.47 -72.65 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.29 Total: 27.33 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 5.24 Total: -21.84 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -5.87 Total: -88.26 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -73.12 0.47 -72.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110301053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.405 kcal (2) G-P(sol) polarization free energy of solvation -73.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds