Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47124 * 2 1 4 4 C 1.53006 * 109.46762 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46959 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46950 * 174.73513 * 5 4 3 7 7 C 1.48534 * 110.99955 * 174.68611 * 6 5 4 8 8 C 1.54317 * 104.67341 * 200.81089 * 7 6 5 9 9 H 1.09003 * 112.55438 * 262.01056 * 8 7 6 10 10 C 1.54162 * 108.86706 * 137.48940 * 8 7 6 11 11 C 1.54845 * 104.32595 * 223.67457 * 10 8 7 12 12 C 1.53974 * 103.14392 * 37.49710 * 11 10 8 13 13 C 1.54159 * 104.73934 * 322.98247 * 12 11 10 14 14 N 1.46505 * 111.79351 * 260.03335 * 13 12 11 15 15 C 1.34772 * 120.00418 * 299.22702 * 14 13 12 16 16 O 1.21277 * 119.99750 * 359.72778 * 15 14 13 17 17 C 1.50700 * 120.00262 * 179.72453 * 15 14 13 18 18 S 1.80999 * 109.47127 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99776 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00353 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99520 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00287 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99781 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46987 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46949 * 119.99818 * 23 21 19 26 26 H 1.48494 * 109.47558 * 240.00157 * 23 21 19 27 27 C 1.48527 * 110.99833 * 59.28488 * 6 5 4 28 28 H 1.09001 * 109.46526 * 60.00271 * 1 2 3 29 29 H 1.09000 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47031 * 300.00517 * 1 2 3 31 31 H 1.08997 * 109.47031 * 239.99483 * 2 1 3 32 32 H 1.09001 * 109.46526 * 119.99729 * 2 1 3 33 33 H 1.08997 * 109.47589 * 59.99825 * 3 2 1 34 34 H 1.09001 * 109.47197 * 299.99317 * 3 2 1 35 35 H 1.08997 * 109.47290 * 59.99546 * 4 3 2 36 36 H 1.09001 * 109.46629 * 299.99570 * 4 3 2 37 37 H 1.09008 * 109.47005 * 54.74067 * 5 4 3 38 38 H 1.08999 * 109.47511 * 294.74210 * 5 4 3 39 39 H 1.08997 * 110.39751 * 82.01035 * 7 6 5 40 40 H 1.09002 * 110.39493 * 319.60698 * 7 6 5 41 41 H 1.09000 * 110.46317 * 342.38536 * 10 8 7 42 42 H 1.08996 * 110.46715 * 104.96252 * 10 8 7 43 43 H 1.09003 * 110.75961 * 156.49439 * 11 10 8 44 44 H 1.09002 * 110.75509 * 279.68982 * 11 10 8 45 45 H 1.09000 * 111.32705 * 203.59133 * 12 11 10 46 46 H 1.09001 * 109.19236 * 81.29921 * 12 11 10 47 47 H 0.97003 * 119.99893 * 118.95304 * 14 13 12 48 48 H 1.09002 * 109.47033 * 300.00025 * 17 15 14 49 49 H 1.09001 * 109.47137 * 60.00068 * 17 15 14 50 50 H 0.96999 * 119.99999 * 180.02562 * 22 21 19 51 51 H 1.08999 * 110.40202 * 40.38895 * 27 6 5 52 52 H 1.08997 * 110.39672 * 277.98534 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8848 -0.0013 6 7 5.5437 2.8867 0.1252 7 6 6.0869 4.2635 0.0005 8 6 7.5686 4.0658 -0.3831 9 1 8.2362 4.1404 0.4754 10 6 7.9377 5.0789 -1.4849 11 6 8.7626 4.2540 -2.5031 12 6 8.0513 2.8884 -2.5055 13 6 7.6272 2.6645 -1.0404 14 7 8.5501 1.7697 -0.3377 15 6 8.7268 0.5065 -0.7731 16 8 8.1179 0.1090 -1.7438 17 6 9.6808 -0.4120 -0.0540 18 16 9.6978 -2.0258 -0.8734 19 6 10.8596 -2.8735 0.1446 20 1 11.3158 -2.3658 0.9816 21 6 11.1892 -4.1936 -0.1298 22 7 10.6344 -4.8120 -1.1508 23 14 12.4214 -5.0922 0.9490 24 1 12.8966 -4.1818 2.0216 25 1 11.7712 -6.2792 1.5600 26 1 13.5754 -5.5300 0.1234 27 6 6.1756 2.1427 -0.9942 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9330 0.9286 -0.8908 36 1 3.9337 0.9284 0.8892 37 1 3.6423 3.4254 0.8379 38 1 3.7954 3.3705 -0.9346 39 1 6.0077 4.7907 0.9512 40 1 5.5614 4.8097 -0.7828 41 1 7.0378 5.4750 -1.9554 42 1 8.5406 5.8878 -1.0724 43 1 8.7312 4.7156 -3.4900 44 1 9.7923 4.1400 -2.1640 45 1 8.7205 2.0934 -2.8342 46 1 7.1752 2.9419 -3.1519 47 1 9.0371 2.0876 0.4386 48 1 10.6829 0.0164 -0.0750 49 1 9.3589 -0.5327 0.9804 50 1 10.8645 -5.7346 -1.3423 51 1 5.6638 2.3600 -1.9318 52 1 6.1632 1.0715 -0.7932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111601388.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = -58.474926 kcal Electronic energy + Delta-G solvation = -28033.747765 eV Core-core repulsion = 24351.002715 eV Total energy + Delta-G solvation = -3682.745051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85509 -38.41811 -36.86095 -35.14695 -33.47755 -32.40438 -31.69243 -30.43954 -29.19652 -27.82821 -25.89488 -25.49391 -25.20900 -22.57364 -21.75809 -21.16600 -20.46093 -19.86321 -19.16475 -17.79791 -16.94553 -16.17755 -15.98423 -15.66040 -15.26179 -15.09506 -14.78440 -14.54285 -14.30103 -14.11669 -13.81417 -13.70930 -13.39821 -13.20685 -12.84089 -12.69015 -12.55421 -12.49902 -12.10215 -11.92032 -11.68819 -11.57919 -11.39165 -11.26965 -11.17203 -11.08909 -11.05515 -10.98607 -10.89491 -10.86152 -10.75700 -10.72423 -10.62141 -10.56120 -9.77450 -9.23046 -9.05280 -8.75505 -8.57329 -8.19667 -6.46322 -6.19604 -3.89226 3.07388 3.16199 3.23089 3.30018 3.35094 3.76034 3.78640 4.09846 4.22889 4.33878 4.55002 4.64895 4.75631 4.92049 4.95874 5.02455 5.04252 5.08275 5.15654 5.16014 5.20375 5.27535 5.31044 5.34517 5.37881 5.48783 5.52107 5.56177 5.58819 5.62871 5.66763 5.68544 5.71915 5.78542 5.85389 5.88209 5.90609 5.94045 5.95076 6.05760 6.12470 6.15880 6.17003 6.19018 6.22858 6.24998 6.67191 6.87364 6.90200 7.62388 7.82255 8.37907 8.70325 9.26088 10.87834 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.002989 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.624014 B = 9366.424457 C =11938.140824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.121 4.121 5 C 0.047 3.953 6 N -0.510 5.510 7 C 0.038 3.962 8 C -0.096 4.096 9 H 0.092 0.908 10 C -0.118 4.118 11 C -0.124 4.124 12 C -0.125 4.125 13 C 0.180 3.820 14 N -0.718 5.718 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.034 3.966 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.398 0.602 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.267 0.733 51 H 0.050 0.950 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.024 21.537 2.192 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.154 4.154 4 C -0.159 4.159 5 C -0.081 4.081 6 N -0.234 5.234 7 C -0.090 4.090 8 C -0.115 4.115 9 H 0.111 0.889 10 C -0.156 4.156 11 C -0.162 4.162 12 C -0.164 4.164 13 C 0.092 3.908 14 N -0.372 5.372 15 C 0.321 3.679 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.094 4.094 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.232 0.768 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.068 0.932 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.960 20.459 0.994 24.788 hybrid contribution 1.479 0.341 1.447 2.097 sum -12.481 20.799 2.441 24.379 Atomic orbital electron populations 1.21773 0.96068 1.01570 1.01506 1.21537 0.95600 0.96835 1.02496 1.21555 0.95183 0.96956 1.01660 1.21637 0.94952 0.96012 1.03282 1.22283 0.88048 0.97643 1.00118 1.65481 1.05401 1.09842 1.42671 1.23247 0.93730 0.91128 1.00895 1.22725 0.96721 0.93560 0.98540 0.88949 1.22490 1.00180 0.97231 0.95668 1.22380 0.99387 0.95394 0.99041 1.22555 1.01331 0.97590 0.94897 1.21327 0.89034 0.88394 0.92034 1.45927 1.45904 1.12174 1.33162 1.20232 0.82227 0.81288 0.84160 1.90684 1.47213 1.74745 1.26312 1.23539 1.00446 1.02631 1.03802 1.85353 1.57847 1.00028 1.40053 1.22914 1.28683 0.99934 1.16677 0.90941 1.24986 0.96569 0.96450 0.95609 1.70027 1.41481 1.12000 1.26815 0.86129 0.80244 0.79333 0.79869 1.19628 1.20584 1.20600 1.23529 0.92814 1.00785 0.92283 0.92935 0.92781 0.92926 0.91829 0.91814 0.92123 0.92344 0.91697 0.90879 0.90840 0.94967 0.90165 0.93481 0.91336 0.91290 0.91371 0.91434 0.89739 0.91242 0.76777 0.89432 0.89321 0.92289 0.93187 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 4 C -0.12 -1.27 4.92 -26.73 -0.13 -1.40 16 5 C 0.05 0.47 4.93 -3.82 -0.02 0.45 16 6 N -0.51 -5.77 5.45 -230.10 -1.25 -7.02 16 7 C 0.04 0.35 6.03 -2.23 -0.01 0.33 16 8 C -0.10 -0.89 3.70 -88.32 -0.33 -1.21 16 9 H 0.09 0.79 7.72 -51.93 -0.40 0.39 16 10 C -0.12 -0.94 6.38 -25.15 -0.16 -1.10 16 11 C -0.12 -1.18 6.86 -25.25 -0.17 -1.36 16 12 C -0.12 -1.56 5.60 -25.62 -0.14 -1.70 16 13 C 0.18 2.20 0.92 -129.52 -0.12 2.08 16 14 N -0.72 -9.88 5.25 -45.49 -0.24 -10.12 16 15 C 0.53 9.84 6.88 -10.99 -0.08 9.76 16 16 O -0.52 -11.18 13.38 5.56 0.07 -11.10 16 17 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.53 -15.28 9.50 30.94 0.29 -14.98 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 23 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 27 C 0.03 0.45 4.20 -2.23 -0.01 0.45 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.78 7.21 -51.93 -0.37 0.40 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 38 H 0.03 0.31 7.97 -51.93 -0.41 -0.11 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.40 6.93 -51.93 -0.36 0.04 16 41 H 0.07 0.51 7.18 -51.93 -0.37 0.14 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.31 6.67 -51.93 -0.35 0.97 16 46 H 0.07 0.84 7.25 -51.93 -0.38 0.47 16 47 H 0.40 4.51 8.31 -40.82 -0.34 4.17 16 48 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 49 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 50 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.05 0.65 7.09 -51.93 -0.37 0.28 16 52 H 0.10 1.58 6.41 -51.93 -0.33 1.25 16 LS Contribution 412.35 15.07 6.21 6.21 Total: -1.00 -32.68 412.35 -11.96 -44.64 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -9.57 Total: 3.06 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.68 Total: -12.85 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.76 Total: -42.65 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.68 -11.96 -44.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111601388.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.834 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds