Wall clock time and date at job start Sat Apr 11 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47124 * 2 1 4 4 C 1.53006 * 109.46762 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46959 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46950 * 174.73513 * 5 4 3 7 7 C 1.48534 * 110.99955 * 174.68611 * 6 5 4 8 8 C 1.54317 * 104.67341 * 200.81089 * 7 6 5 9 9 H 1.09003 * 112.55438 * 262.01056 * 8 7 6 10 10 C 1.54162 * 108.86706 * 137.48940 * 8 7 6 11 11 C 1.54845 * 104.32595 * 223.67457 * 10 8 7 12 12 C 1.53974 * 103.14392 * 37.49710 * 11 10 8 13 13 C 1.54159 * 104.73934 * 322.98247 * 12 11 10 14 14 N 1.46505 * 111.79351 * 260.03335 * 13 12 11 15 15 C 1.34772 * 120.00418 * 299.22702 * 14 13 12 16 16 O 1.21277 * 119.99750 * 359.72778 * 15 14 13 17 17 C 1.50700 * 120.00262 * 179.72453 * 15 14 13 18 18 S 1.80999 * 109.47127 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99776 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00353 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99520 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00287 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99781 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46987 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46949 * 119.99818 * 23 21 19 26 26 H 1.48494 * 109.47558 * 240.00157 * 23 21 19 27 27 C 1.48527 * 110.99833 * 59.28488 * 6 5 4 28 28 H 1.09001 * 109.46526 * 60.00271 * 1 2 3 29 29 H 1.09000 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47031 * 300.00517 * 1 2 3 31 31 H 1.08997 * 109.47031 * 239.99483 * 2 1 3 32 32 H 1.09001 * 109.46526 * 119.99729 * 2 1 3 33 33 H 1.08997 * 109.47589 * 59.99825 * 3 2 1 34 34 H 1.09001 * 109.47197 * 299.99317 * 3 2 1 35 35 H 1.08997 * 109.47290 * 59.99546 * 4 3 2 36 36 H 1.09001 * 109.46629 * 299.99570 * 4 3 2 37 37 H 1.09008 * 109.47005 * 54.74067 * 5 4 3 38 38 H 1.08999 * 109.47511 * 294.74210 * 5 4 3 39 39 H 1.08997 * 110.39751 * 82.01035 * 7 6 5 40 40 H 1.09002 * 110.39493 * 319.60698 * 7 6 5 41 41 H 1.09000 * 110.46317 * 342.38536 * 10 8 7 42 42 H 1.08996 * 110.46715 * 104.96252 * 10 8 7 43 43 H 1.09003 * 110.75961 * 156.49439 * 11 10 8 44 44 H 1.09002 * 110.75509 * 279.68982 * 11 10 8 45 45 H 1.09000 * 111.32705 * 203.59133 * 12 11 10 46 46 H 1.09001 * 109.19236 * 81.29921 * 12 11 10 47 47 H 0.97003 * 119.99893 * 118.95304 * 14 13 12 48 48 H 1.09002 * 109.47033 * 300.00025 * 17 15 14 49 49 H 1.09001 * 109.47137 * 60.00068 * 17 15 14 50 50 H 0.96999 * 119.99999 * 180.02562 * 22 21 19 51 51 H 1.08999 * 110.40202 * 40.38895 * 27 6 5 52 52 H 1.08997 * 110.39672 * 277.98534 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8848 -0.0013 6 7 5.5437 2.8867 0.1252 7 6 6.0869 4.2635 0.0005 8 6 7.5686 4.0658 -0.3831 9 1 8.2362 4.1404 0.4754 10 6 7.9377 5.0789 -1.4849 11 6 8.7626 4.2540 -2.5031 12 6 8.0513 2.8884 -2.5055 13 6 7.6272 2.6645 -1.0404 14 7 8.5501 1.7697 -0.3377 15 6 8.7268 0.5065 -0.7731 16 8 8.1179 0.1090 -1.7438 17 6 9.6808 -0.4120 -0.0540 18 16 9.6978 -2.0258 -0.8734 19 6 10.8596 -2.8735 0.1446 20 1 11.3158 -2.3658 0.9816 21 6 11.1892 -4.1936 -0.1298 22 7 10.6344 -4.8120 -1.1508 23 14 12.4214 -5.0922 0.9490 24 1 12.8966 -4.1818 2.0216 25 1 11.7712 -6.2792 1.5600 26 1 13.5754 -5.5300 0.1234 27 6 6.1756 2.1427 -0.9942 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9330 0.9286 -0.8908 36 1 3.9337 0.9284 0.8892 37 1 3.6423 3.4254 0.8379 38 1 3.7954 3.3705 -0.9346 39 1 6.0077 4.7907 0.9512 40 1 5.5614 4.8097 -0.7828 41 1 7.0378 5.4750 -1.9554 42 1 8.5406 5.8878 -1.0724 43 1 8.7312 4.7156 -3.4900 44 1 9.7923 4.1400 -2.1640 45 1 8.7205 2.0934 -2.8342 46 1 7.1752 2.9419 -3.1519 47 1 9.0371 2.0876 0.4386 48 1 10.6829 0.0164 -0.0750 49 1 9.3589 -0.5327 0.9804 50 1 10.8645 -5.7346 -1.3423 51 1 5.6638 2.3600 -1.9318 52 1 6.1632 1.0715 -0.7932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111601388.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:42 Heat of formation + Delta-G solvation = -79.661017 kcal Electronic energy + Delta-G solvation = -28034.666463 eV Core-core repulsion = 24351.002715 eV Total energy + Delta-G solvation = -3683.663749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88145 -39.74568 -37.71747 -35.94828 -34.74616 -34.57781 -32.47621 -31.62479 -30.31489 -28.94057 -27.65180 -26.72869 -26.06240 -23.51477 -22.67415 -21.93213 -21.40374 -20.93135 -20.29205 -19.72104 -18.07638 -17.47727 -17.02359 -16.88665 -16.57556 -16.31076 -16.21912 -15.84059 -15.56712 -15.18556 -14.82398 -14.58870 -14.57662 -14.38057 -14.21420 -13.80184 -13.66282 -13.42780 -13.16099 -13.06934 -12.98308 -12.91357 -12.66412 -12.50464 -12.39126 -12.28018 -12.16004 -11.97193 -11.89148 -11.72858 -11.70112 -11.60483 -11.55637 -11.41081 -11.34092 -11.16124 -10.76047 -10.26910 -10.00872 -9.44294 -8.65805 -8.35157 -6.12506 1.27078 1.40578 1.46742 1.58110 1.66967 2.25566 2.31205 2.94973 2.98899 3.23347 3.33827 3.49220 3.77423 3.84661 3.96717 3.97650 4.12159 4.16852 4.25719 4.28647 4.29764 4.32243 4.37255 4.42140 4.49579 4.50741 4.56539 4.60586 4.70416 4.73415 4.76371 4.83021 4.88131 4.91132 4.96298 4.97773 5.04110 5.07517 5.12056 5.18566 5.21492 5.25078 5.29586 5.38893 5.41581 5.43013 5.46595 5.65030 5.83271 6.06919 6.19621 6.57589 7.06255 7.31280 8.74248 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.002989 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.624014 B = 9366.424457 C =11938.140824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.108 4.108 4 C -0.117 4.117 5 C 0.050 3.950 6 N -0.522 5.522 7 C 0.040 3.960 8 C -0.088 4.088 9 H 0.107 0.893 10 C -0.107 4.107 11 C -0.119 4.119 12 C -0.127 4.127 13 C 0.172 3.828 14 N -0.696 5.696 15 C 0.537 3.463 16 O -0.555 6.555 17 C -0.130 4.130 18 S -0.147 6.147 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.042 3.958 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.413 0.587 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.271 0.729 51 H 0.045 0.955 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.764 24.673 4.243 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.146 4.146 4 C -0.155 4.155 5 C -0.078 4.078 6 N -0.246 5.246 7 C -0.088 4.088 8 C -0.107 4.107 9 H 0.126 0.874 10 C -0.145 4.145 11 C -0.157 4.157 12 C -0.166 4.166 13 C 0.085 3.915 14 N -0.349 5.349 15 C 0.322 3.678 16 O -0.432 6.432 17 C -0.281 4.281 18 S 0.081 5.919 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.198 1.198 27 C -0.087 4.087 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.250 0.750 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.080 0.920 51 H 0.063 0.937 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.701 23.650 3.073 27.504 hybrid contribution 1.331 -0.571 0.788 1.649 sum -12.370 23.079 3.861 26.468 Atomic orbital electron populations 1.21749 0.94678 1.01896 1.02271 1.21560 0.96852 0.97052 1.01396 1.21502 0.93586 0.96774 1.02689 1.21576 0.96380 0.96471 1.01094 1.22304 0.87329 0.96939 1.01227 1.65462 1.06218 1.11328 1.41562 1.23357 0.93255 0.89792 1.02387 1.22770 0.97441 0.91234 0.99270 0.87441 1.22473 1.00636 0.96963 0.94449 1.22360 0.99169 0.93663 1.00480 1.22514 1.00799 0.98403 0.94881 1.21568 0.87841 0.89773 0.92342 1.45700 1.45449 1.10617 1.33146 1.19942 0.81699 0.82509 0.83621 1.90677 1.48693 1.75781 1.28095 1.23374 1.02262 0.98819 1.03628 1.85524 1.58474 1.05410 1.42538 1.23233 1.28728 1.00569 1.16817 0.90116 1.26125 0.98652 0.97354 0.97049 1.70188 1.43229 1.12514 1.28826 0.84909 0.77244 0.77879 0.77938 1.18093 1.19916 1.19837 1.23289 0.93926 0.98705 0.92802 0.92317 0.92749 0.91953 0.93304 0.92662 0.90680 0.91505 0.94264 0.92734 0.89005 0.94192 0.88249 0.92252 0.90294 0.88885 0.90257 0.91586 0.93537 0.91532 0.74960 0.87546 0.87871 0.92014 0.93689 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.13 -2.44 5.93 30.59 0.18 -2.26 16 3 C -0.11 -1.82 5.21 30.59 0.16 -1.66 16 4 C -0.12 -2.54 4.92 30.60 0.15 -2.39 16 5 C 0.05 0.92 4.93 86.30 0.43 1.35 16 6 N -0.52 -11.14 5.45 -881.91 -4.81 -15.94 16 7 C 0.04 0.59 6.03 86.43 0.52 1.11 16 8 C -0.09 -1.35 3.70 -9.30 -0.03 -1.38 16 9 H 0.11 1.38 7.72 -2.39 -0.02 1.36 16 10 C -0.11 -1.29 6.38 31.62 0.20 -1.09 16 11 C -0.12 -2.02 6.86 31.55 0.22 -1.81 16 12 C -0.13 -3.18 5.60 31.32 0.18 -3.01 16 13 C 0.17 4.10 0.92 5.09 0.00 4.11 16 14 N -0.70 -18.86 5.25 -416.22 -2.18 -21.04 16 15 C 0.54 20.35 6.88 87.66 0.60 20.95 16 16 O -0.55 -25.65 13.38 -3.02 -0.04 -25.69 16 17 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 18 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 19 C -0.55 -31.71 9.50 67.95 0.65 -31.06 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.74 5.49 84.86 0.47 1.21 16 22 N -0.91 -56.64 13.22 21.65 0.29 -56.35 16 23 Si 1.00 44.26 29.55 68.60 2.03 46.29 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 C 0.04 1.13 4.20 86.44 0.36 1.49 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.04 1.03 7.21 -2.39 -0.02 1.01 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.04 0.69 7.97 -2.39 -0.02 0.67 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 0.77 6.93 -2.39 -0.02 0.75 16 41 H 0.08 0.84 7.18 -2.39 -0.02 0.82 16 42 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.52 6.67 -2.39 -0.02 1.51 16 46 H 0.07 1.66 7.25 -2.39 -0.02 1.64 16 47 H 0.41 8.59 8.31 -92.71 -0.77 7.82 16 48 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 49 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 50 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 51 H 0.04 1.23 7.09 -2.39 -0.02 1.21 16 52 H 0.05 1.89 6.41 -2.39 -0.02 1.87 16 Total: -1.00 -75.41 412.35 -0.54 -75.95 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.11 Total: 27.06 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 5.23 Total: -20.83 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -6.71 Total: -93.33 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.04 Total: -25.69 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -75.41 -0.54 -75.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111601388.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.712 kcal (2) G-P(sol) polarization free energy of solvation -75.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds