Wall clock time and date at job start Sat Apr 11 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.53001 * 109.46844 * 120.00096 * 2 1 3 5 5 C 1.53000 * 109.47648 * 65.00036 * 4 2 1 6 6 N 1.46897 * 109.47204 * 179.97438 * 5 4 2 7 7 C 1.48526 * 111.00148 * 305.40344 * 6 5 4 8 8 C 1.54319 * 104.67335 * 200.80894 * 7 6 5 9 9 H 1.09002 * 111.82379 * 262.42732 * 8 7 6 10 10 C 1.54166 * 108.86337 * 138.41236 * 8 7 6 11 11 C 1.54845 * 104.32249 * 223.67818 * 10 8 7 12 12 C 1.54846 * 102.73615 * 38.18140 * 11 10 8 13 13 C 1.54901 * 104.93228 * 23.92988 * 8 7 6 14 14 N 1.46499 * 111.88988 * 238.54558 * 13 8 7 15 15 C 1.34778 * 119.99713 * 178.40450 * 14 13 8 16 16 O 1.21281 * 120.00169 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99979 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.46943 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99837 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00392 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00242 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00304 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99671 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47210 * 90.00153 * 23 21 19 25 25 H 1.48502 * 109.47067 * 210.00314 * 23 21 19 26 26 H 1.48499 * 109.47112 * 330.00210 * 23 21 19 27 27 C 1.48536 * 110.99576 * 189.99972 * 6 5 4 28 28 H 1.08992 * 109.47361 * 60.00236 * 1 2 3 29 29 H 1.08999 * 109.47284 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47442 * 299.99818 * 1 2 3 31 31 H 1.09002 * 109.47054 * 239.99535 * 2 1 3 32 32 H 1.08997 * 109.47119 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47005 * 300.00413 * 3 2 1 34 34 H 1.08997 * 109.47037 * 59.99890 * 3 2 1 35 35 H 1.08998 * 109.47179 * 304.99421 * 4 2 1 36 36 H 1.09004 * 109.46571 * 184.99907 * 4 2 1 37 37 H 1.09002 * 109.46625 * 59.99526 * 5 4 2 38 38 H 1.08998 * 109.47077 * 300.00002 * 5 4 2 39 39 H 1.08997 * 110.39929 * 319.60821 * 7 6 5 40 40 H 1.09005 * 110.39688 * 81.89301 * 7 6 5 41 41 H 1.08997 * 110.46163 * 342.38400 * 10 8 7 42 42 H 1.08994 * 110.46650 * 104.96918 * 10 8 7 43 43 H 1.08995 * 110.76093 * 156.49267 * 11 10 8 44 44 H 1.09003 * 110.76011 * 279.68801 * 11 10 8 45 45 H 1.08992 * 110.46508 * 80.52626 * 12 11 10 46 46 H 1.09002 * 110.46260 * 203.10839 * 12 11 10 47 47 H 0.96998 * 120.00331 * 358.39926 * 14 13 8 48 48 H 1.08998 * 109.46741 * 300.00047 * 17 15 14 49 49 H 1.08994 * 109.46786 * 60.00044 * 17 15 14 50 50 H 0.96995 * 119.99727 * 179.97438 * 22 21 19 51 51 H 1.08999 * 110.39402 * 277.98945 * 27 6 5 52 52 H 1.08999 * 110.39698 * 40.39391 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1881 6 7 2.1254 -2.8881 2.3872 7 6 3.5887 -2.6948 2.5528 8 6 4.0350 -3.8541 3.4683 9 1 4.1110 -3.5417 4.5098 10 6 5.3688 -4.4200 2.9417 11 6 5.1917 -5.9562 3.0224 12 6 3.7128 -6.1515 2.6069 13 6 2.9617 -4.9537 3.2719 14 7 2.3069 -5.3093 4.5333 15 6 1.3216 -6.2288 4.5452 16 8 0.9767 -6.7614 3.5116 17 6 0.6484 -6.5950 5.8428 18 16 -0.6221 -7.8460 5.5312 19 6 -1.2290 -8.0802 7.1687 20 1 -0.8049 -7.5179 7.9874 21 6 -2.2514 -8.9882 7.4067 22 7 -2.7044 -9.1636 8.6301 23 14 -2.9845 -9.9614 5.9908 24 1 -2.2328 -11.2308 5.8210 25 1 -4.4085 -10.2648 6.2836 26 1 -2.8952 -9.1624 4.7423 27 6 1.9644 -4.3588 2.2556 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6444 1.2951 37 1 2.0698 -2.6550 0.3003 38 1 0.5489 -2.2724 1.1421 39 1 4.0917 -2.7575 1.5879 40 1 3.7939 -1.7343 3.0256 41 1 5.5338 -4.1091 1.9101 42 1 6.1957 -4.0981 3.5746 43 1 5.8591 -6.4593 2.3228 44 1 5.3605 -6.3117 4.0388 45 1 3.6140 -6.1165 1.5221 46 1 3.3294 -7.0951 2.9952 47 1 2.5826 -4.8831 5.3599 48 1 1.3888 -6.9935 6.5364 49 1 0.1859 -5.7078 6.2752 50 1 -3.4192 -9.7979 8.7963 51 1 0.9453 -4.6533 2.5064 52 1 2.2156 -4.6795 1.2446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111602384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:45 Heat of formation + Delta-G solvation = -75.571414 kcal Electronic energy + Delta-G solvation = -28111.664465 eV Core-core repulsion = 24428.178055 eV Total energy + Delta-G solvation = -3683.486410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81929 -39.83053 -38.07614 -35.98236 -34.78371 -34.65993 -31.70723 -31.37217 -30.12233 -28.06385 -27.93844 -27.65444 -26.60886 -24.30601 -22.96050 -21.46001 -21.13963 -20.86106 -20.23942 -19.76767 -18.08972 -17.53702 -17.11196 -16.82345 -16.49215 -16.22145 -16.15987 -15.73275 -15.50317 -15.33803 -14.99933 -14.79035 -14.64945 -14.28556 -14.13238 -13.89414 -13.57418 -13.36939 -13.32384 -13.11300 -13.01886 -12.95588 -12.79240 -12.56097 -12.42544 -12.30480 -12.19262 -12.01418 -11.87241 -11.80421 -11.64592 -11.55735 -11.52190 -11.45642 -11.32063 -11.17658 -10.82683 -10.53653 -10.02583 -9.43456 -8.99062 -8.52070 -6.22278 0.98706 1.30226 1.46024 1.55417 1.60777 2.22095 2.26339 2.71809 2.86006 2.92739 3.25396 3.47830 3.75822 3.85977 3.90771 3.97277 4.08891 4.11981 4.22578 4.27967 4.31995 4.33415 4.35085 4.45393 4.46874 4.52101 4.57360 4.65420 4.71280 4.74213 4.80244 4.83115 4.88510 4.94959 4.98959 5.02371 5.02892 5.10897 5.13121 5.14947 5.19881 5.24282 5.32169 5.43664 5.45245 5.51575 5.62525 5.70353 5.83933 6.06104 6.10984 6.52594 6.93073 7.24781 8.60463 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012423 B = 0.002622 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.317641 B =10675.805119 C =12171.869822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.103 4.103 5 C 0.044 3.956 6 N -0.521 5.521 7 C 0.040 3.960 8 C -0.090 4.090 9 H 0.104 0.896 10 C -0.108 4.108 11 C -0.119 4.119 12 C -0.124 4.124 13 C 0.172 3.828 14 N -0.694 5.694 15 C 0.538 3.462 16 O -0.552 6.552 17 C -0.111 4.111 18 S -0.172 6.172 19 C -0.529 4.529 20 H 0.061 0.939 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.238 1.238 27 C 0.038 3.962 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.415 0.585 48 H 0.111 0.889 49 H 0.108 0.892 50 H 0.277 0.723 51 H 0.054 0.946 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.206 20.019 -17.005 32.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.141 4.141 5 C -0.084 4.084 6 N -0.244 5.244 7 C -0.087 4.087 8 C -0.109 4.109 9 H 0.122 0.878 10 C -0.145 4.145 11 C -0.157 4.157 12 C -0.163 4.163 13 C 0.084 3.916 14 N -0.346 5.346 15 C 0.323 3.677 16 O -0.430 6.430 17 C -0.262 4.262 18 S 0.055 5.945 19 C -0.676 4.676 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.091 4.091 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.252 0.748 48 H 0.129 0.871 49 H 0.126 0.874 50 H 0.086 0.914 51 H 0.073 0.927 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.202 19.306 -18.139 32.141 hybrid contribution -0.231 -0.412 0.962 1.071 sum 17.971 18.894 -17.178 31.225 Atomic orbital electron populations 1.21904 0.95600 1.01443 1.01862 1.21087 0.95689 0.96778 0.97794 1.21803 1.01211 0.95141 1.01959 1.21616 1.01288 0.92869 0.98296 1.22372 1.00337 0.95277 0.90409 1.65452 1.15455 1.06447 1.37085 1.23350 0.87360 0.99236 0.98783 1.22768 0.93698 0.93019 1.01458 0.87772 1.22458 0.95736 0.94200 1.02132 1.22497 0.94323 0.97005 1.01860 1.23021 0.96202 0.97071 1.00002 1.21869 0.91549 0.94625 0.83509 1.45628 1.36398 1.41646 1.10970 1.19859 0.79526 0.78900 0.89367 1.90675 1.64068 1.53589 1.34668 1.23271 1.00972 1.02741 0.99249 1.84655 1.44093 1.52775 1.12985 1.22470 1.23920 1.28542 0.92699 0.92080 1.25573 0.95653 0.96663 0.98182 1.70017 1.28119 1.36096 1.21277 0.85859 0.79114 0.80444 0.80898 1.18637 1.18332 1.16150 1.23350 0.99758 0.88456 0.97527 0.92234 0.93371 0.92908 0.91253 0.92115 0.92303 0.92776 0.91852 0.90839 0.94686 0.91848 0.92428 0.88576 0.90313 0.89093 0.90239 0.91429 0.90917 0.93607 0.74813 0.87101 0.87394 0.91374 0.92729 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.95 71.98 0.64 -1.46 16 2 C -0.09 -1.17 2.92 -10.79 -0.03 -1.20 16 3 C -0.14 -1.46 9.19 71.98 0.66 -0.80 16 4 C -0.10 -1.42 4.39 30.59 0.13 -1.29 16 5 C 0.04 0.80 4.81 86.30 0.42 1.22 16 6 N -0.52 -10.67 5.49 -881.91 -4.84 -15.51 16 7 C 0.04 0.57 4.64 86.44 0.40 0.97 16 8 C -0.09 -1.30 3.64 -9.30 -0.03 -1.33 16 9 H 0.10 1.29 7.72 -2.39 -0.02 1.27 16 10 C -0.11 -1.19 6.36 31.62 0.20 -0.98 16 11 C -0.12 -1.82 6.90 31.85 0.22 -1.60 16 12 C -0.12 -2.79 5.79 32.35 0.19 -2.60 16 13 C 0.17 3.79 0.93 5.83 0.01 3.80 16 14 N -0.69 -17.43 5.29 -412.92 -2.18 -19.62 16 15 C 0.54 18.83 6.96 87.66 0.61 19.44 16 16 O -0.55 -23.31 13.48 -3.03 -0.04 -23.35 16 17 C -0.11 -4.31 6.16 71.24 0.44 -3.87 16 18 S -0.17 -8.80 18.55 -56.49 -1.05 -9.85 16 19 C -0.53 -31.24 10.04 67.95 0.68 -30.55 16 20 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 21 C 0.04 2.65 5.50 84.86 0.47 3.12 16 22 N -0.92 -56.47 13.97 21.65 0.30 -56.17 16 23 Si 0.91 45.64 27.74 68.60 1.90 47.54 16 24 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 27 C 0.04 0.97 5.33 86.44 0.46 1.43 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.76 6.56 -2.39 -0.02 0.74 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 0.85 6.83 -2.38 -0.02 0.84 16 37 H 0.03 0.62 7.88 -2.39 -0.02 0.60 16 38 H 0.06 1.34 6.56 -2.39 -0.02 1.33 16 39 H 0.06 0.72 7.05 -2.39 -0.02 0.71 16 40 H 0.10 1.14 7.65 -2.38 -0.02 1.12 16 41 H 0.08 0.76 7.18 -2.39 -0.02 0.74 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.60 7.25 -2.39 -0.02 1.59 16 46 H 0.05 1.34 6.99 -2.39 -0.02 1.32 16 47 H 0.41 8.02 8.31 -92.71 -0.77 7.25 16 48 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 49 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 50 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 51 H 0.05 1.83 6.65 -2.39 -0.02 1.82 16 52 H 0.05 1.23 6.90 -2.39 -0.02 1.21 16 Total: -1.00 -72.13 405.59 -0.36 -72.49 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.08 Total: 20.18 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 5.46 Total: -15.72 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -6.72 Total: -91.29 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.04 Total: -23.35 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.54 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -72.13 -0.36 -72.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111602384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.080 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds